Guide to the Human Genome
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Name: MRTO4 Sequence: fasta or formatted (239aa) NCBI GI: 18490987
Description:

mRNA turnover 4 homolog

Referenced in:

Ribosomes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         12           2
 C cysteine            0.8          2           1
 D aspartate           6.7         16           3
 E glutamate           8.8         21           2
 F phenylalanine       4.6         11           2
 G glycine             5.4         13           1
 H histidine           1.3          3           1
 I isoleucine          1.7          4           1
 K lysine             10.5         25           2
 L leucine            10.0         24           2
 M methionine          4.2         10           2
 N asparagine          3.8          9           1
 P proline             3.8          9           1
 Q glutamine           3.8          9           2
 R arginine            5.9         14           1
 S serine              7.5         18           1
 T threonine           5.4         13           1
 V valine              6.3         15           2
 W tryptophan          1.3          3           1
 Y tyrosine            3.3          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   mRNA turnover 4 homolog 
RPLP0                 0.077   ribosomal protein P0 
RPLP0                 0.077   ribosomal protein P0 
PPP1R12B              0.013   protein phosphatase 1, regulatory (inhibitor) subuni...
PPP1R12B              0.013   protein phosphatase 1, regulatory (inhibitor) subunit...
EP400                 0.013   E1A binding protein p400 
HERC2                 0.011   hect domain and RLD 2 
SFRS8                 0.011   splicing factor, arginine/serine-rich 8 
AEBP2                 0.011   AE binding protein 2 isoform b 
AEBP2                 0.011   AE binding protein 2 isoform a 
GRPEL1                0.009   GrpE-like 1, mitochondrial 
SYNE2                 0.007   spectrin repeat containing, nuclear envelope 2 isof...
SYNE2                 0.007   spectrin repeat containing, nuclear envelope 2 isof...
SERPINA11             0.007   serpin peptidase inhibitor, clade A (alpha-1 antipr...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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