Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: HOXA7 Sequence: fasta or formatted (230aa) NCBI GI: 24497556
Description:

homeobox A7

Referenced in:

HOX Genes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.3         33           4
 C cysteine            2.2          5           1
 D aspartate           5.7         13           3
 E glutamate           8.7         20           4
 F phenylalanine       3.9          9           1
 G glycine             7.8         18           1
 H histidine           1.7          4           1
 I isoleucine          2.6          6           1
 K lysine              4.8         11           2
 L leucine             6.1         14           1
 M methionine          1.3          3           1
 N asparagine          4.3         10           1
 P proline             5.2         12           1
 Q glutamine           3.5          8           1
 R arginine            6.5         15           4
 S serine              7.8         18           3
 T threonine           4.8         11           1
 V valine              1.7          4           1
 W tryptophan          1.3          3           1
 Y tyrosine            5.7         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   homeobox A7 
HOXB7                 0.488   homeobox B7 
HOXC8                 0.275   homeobox C8 
HOXC6                 0.262   homeobox C6 isoform 1 
HOXB8                 0.257   homeobox B8 
HOXB6                 0.255   homeobox B6 
HOXC6                 0.253   homeobox C6 isoform 2 
HOXA5                 0.246   homeobox A5 
HOXB5                 0.239   homeobox B5 
HOXA6                 0.235   homeobox A6 
HOXC4                 0.231   homeobox C4 
HOXC4                 0.231   homeobox C4 
HOXD8                 0.220   homeobox D8 
HOXC5                 0.217   homeobox C5 
HOXB4                 0.215   homeobox B4 
HOXD4                 0.215   homeobox D4 
HOXA4                 0.215   homeobox A4 
HOXD3                 0.166   homeobox D3 
HOXD9                 0.166   homeobox D9 
PDX1                  0.157   pancreatic and duodenal homeobox 1 
HOXA3                 0.153   homeobox A3 isoform b 
HOXA3                 0.153   homeobox A3 isoform a 
HOXA3                 0.153   homeobox A3 isoform a 
HOXB3                 0.153   homeobox B3 
HOXC9                 0.144   homeobox C9 
HOXA2                 0.142   homeobox A2 
HOXB9                 0.142   homeobox B9 
HOXB1                 0.142   homeobox B1 
HOXA9                 0.137   homeobox A9 
HOXA10                0.137   homeobox A10 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press