Guide to the Human Genome
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Name: LOC100290313 Sequence: fasta or formatted (153aa) NCBI GI: 239750635
Description:

PREDICTED: hypothetical protein XP_002347460

Referenced in:

Ribosomes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         12           2
 C cysteine            4.6          7           1
 D aspartate           4.6          7           3
 E glutamate           8.5         13           2
 F phenylalanine       3.9          6           2
 G glycine             5.2          8           2
 H histidine           5.2          8           2
 I isoleucine          6.5         10           1
 K lysine              5.9          9           2
 L leucine             7.2         11           2
 M methionine          2.0          3           1
 N asparagine          7.2         11           1
 P proline             6.5         10           1
 Q glutamine           2.0          3           1
 R arginine            2.6          4           1
 S serine              3.9          6           1
 T threonine           8.5         13           3
 V valine              5.2          8           2
 W tryptophan          0.7          1           1
 Y tyrosine            2.0          3           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347460 
LOC100293508          1.000   PREDICTED: hypothetical protein 
LOC100289389          1.000   PREDICTED: hypothetical protein XP_002343314 
RPLP1                 0.347   ribosomal protein P1 isoform 2 
RPLP1                 0.300   ribosomal protein P1 isoform 1 
RPLP2                 0.087   ribosomal protein P2 
RPLP0                 0.057   ribosomal protein P0 
RPLP0                 0.057   ribosomal protein P0 
MYL1                  0.030   fast skeletal myosin alkali light chain 1 isoform 1f...
AKAP8                 0.027   A-kinase anchor protein 8 
KIAA1522              0.027   hypothetical protein LOC57648 
ZBTB3                 0.027   zinc finger and BTB domain containing 3 
OTOP3                 0.023   otopetrin 3 
CDKN1C                0.023   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.023   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.023   cyclin-dependent kinase inhibitor 1C isoform a 
KIAA1543              0.020   NEZHA isoform 2 
KIAA1543              0.020   NEZHA isoform 1 
SHANK1                0.020   SH3 and multiple ankyrin repeat domains 1 
CASZ1                 0.017   castor homolog 1, zinc finger isoform a 
MYL4                  0.017   atrial/embryonic alkali myosin light chain 
MYL4                  0.017   atrial/embryonic alkali myosin light chain 
MXRA7                 0.017   transmembrane anchor protein 1 isoform 3 
MXRA7                 0.017   transmembrane anchor protein 1 isoform 2 
MXRA7                 0.017   transmembrane anchor protein 1 isoform 1 
KAT2A                 0.017   general control of amino acid synthesis 5-like 2 [H...
SLC16A10              0.017   solute carrier family 16, member 10 
HCN2                  0.017   hyperpolarization activated cyclic nucleotide-gated...
MUC5AC                0.017   mucin 5AC 
BASP1                 0.017   brain abundant, membrane attached signal protein 1 [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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