Guide to the Human Genome
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Name: RPLP1 Sequence: fasta or formatted (114aa) NCBI GI: 4506669
Description:

ribosomal protein P1 isoform 1

Referenced in:

Ribosomes

Other entries for this name:
alt prot [89aa] ribosomal protein P1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            19.3         22           3
 C cysteine            1.8          2           1
 D aspartate           6.1          7           3
 E glutamate           9.6         11           2
 F phenylalanine       3.5          4           1
 G glycine             9.6         11           2
 H histidine           0.9          1           1
 I isoleucine          5.3          6           1
 K lysine              6.1          7           2
 L leucine             7.0          8           1
 M methionine          1.8          2           1
 N asparagine          4.4          5           1
 P proline             7.0          8           1
 Q glutamine           0.0          0           0
 R arginine            0.0          0           0
 S serine              6.1          7           1
 T threonine           2.6          3           1
 V valine              7.0          8           1
 W tryptophan          0.9          1           1
 Y tyrosine            0.9          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ribosomal protein P1 isoform 1 
RPLP1                 0.680   ribosomal protein P1 isoform 2 
LOC100293508          0.443   PREDICTED: hypothetical protein 
LOC100290313          0.443   PREDICTED: hypothetical protein XP_002347460 
LOC100289389          0.443   PREDICTED: hypothetical protein XP_002343314 
RPLP2                 0.187   ribosomal protein P2 
RPLP0                 0.128   ribosomal protein P0 
RPLP0                 0.128   ribosomal protein P0 
CDKN1C                0.069   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.069   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.069   cyclin-dependent kinase inhibitor 1C isoform a 
MYL1                  0.064   fast skeletal myosin alkali light chain 1 isoform 1f...
AEBP2                 0.059   AE binding protein 2 isoform b 
AEBP2                 0.059   AE binding protein 2 isoform a 
MXRA7                 0.054   transmembrane anchor protein 1 isoform 3 
MXRA7                 0.054   transmembrane anchor protein 1 isoform 2 
MXRA7                 0.054   transmembrane anchor protein 1 isoform 1 
ZBTB3                 0.049   zinc finger and BTB domain containing 3 
CASZ1                 0.049   castor homolog 1, zinc finger isoform a 
ADRM1                 0.044   adhesion regulating molecule 1 precursor 
ADRM1                 0.044   adhesion regulating molecule 1 precursor 
PRAGMIN               0.039   pragmin 
GRIN2D                0.034   N-methyl-D-aspartate receptor subunit 2D precursor ...
MYL4                  0.034   atrial/embryonic alkali myosin light chain 
MYL4                  0.034   atrial/embryonic alkali myosin light chain 
SOX12                 0.034   SRY (sex determining region Y)-box 12 
LOC100291383          0.030   PREDICTED: hypothetical protein XP_002346891 
KIAA1543              0.030   NEZHA isoform 2 
KIAA1543              0.030   NEZHA isoform 1 
FAM48B1               0.030   hypothetical protein LOC100130302 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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