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Search of human proteins with 4504399
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4504399 major histocompatibility complex, class II, DM beta
precursor [Homo sapiens]
(263 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4504399 major histocompatibility complex, class II, DM beta p... 557 e-159
gi|239740855 PREDICTED: similar to major histocompatibility comp... 83 3e-16
gi|239740853 PREDICTED: similar to major histocompatibility comp... 83 3e-16
gi|24797076 major histocompatibility complex, class II, DP beta ... 82 5e-16
gi|239758095 PREDICTED: similar to major histocompatibility comp... 81 1e-15
gi|239740859 PREDICTED: similar to major histocompatibility comp... 81 1e-15
gi|239740857 PREDICTED: similar to major histocompatibility comp... 81 1e-15
gi|239740749 PREDICTED: similar to major histocompatibility comp... 81 1e-15
gi|17986005 major histocompatibility complex, class II, DR beta ... 80 2e-15
gi|239748785 PREDICTED: similar to HLA class II histocompatibili... 80 2e-15
gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo ... 79 4e-15
gi|239740745 PREDICTED: similar to HLA class II histocompatibili... 79 5e-15
gi|239740743 PREDICTED: similar to HLA class II histocompatibili... 79 5e-15
gi|239740695 PREDICTED: similar to HLA class II histocompatibili... 79 5e-15
gi|239740693 PREDICTED: similar to HLA class II histocompatibili... 79 5e-15
gi|155030211 major histocompatibility complex, class II, DR beta... 78 7e-15
gi|239748788 PREDICTED: similar to major histocompatibility comp... 78 7e-15
gi|239740863 PREDICTED: similar to major histocompatibility comp... 78 7e-15
gi|239513955 PREDICTED: similar to major histocompatibility comp... 78 7e-15
gi|24797074 major histocompatibility complex, class II, DP alpha... 78 9e-15
gi|169168671 PREDICTED: similar to MHC class II antigen [Homo sa... 77 2e-14
gi|4504403 major histocompatibility complex, class II, DO beta p... 77 2e-14
gi|52630344 major histocompatibility complex, class II, DR beta ... 76 3e-14
gi|239758090 PREDICTED: major histocompatibility complex, class ... 76 3e-14
gi|169168591 PREDICTED: similar to major histocompatibility comp... 76 3e-14
gi|239740920 PREDICTED: similar to major histocompatibility comp... 76 3e-14
gi|239740918 PREDICTED: similar to major histocompatibility comp... 76 3e-14
gi|150418002 major histocompatibility complex, class II, DQ beta... 75 6e-14
gi|52426774 major histocompatibility complex, class II, DR alpha... 75 6e-14
gi|149158702 major histocompatibility complex, class I, F isofor... 73 2e-13
>gi|4504399 major histocompatibility complex, class II, DM beta
precursor [Homo sapiens]
Length = 263
Score = 557 bits (1435), Expect = e-159
Identities = 263/263 (100%), Positives = 263/263 (100%)
Query: 1 MITFLPLLLGLSLGCTGAGGFVAHVESTCLLDDAGTPKDFTYCISFNKDLLTCWDPEENK 60
MITFLPLLLGLSLGCTGAGGFVAHVESTCLLDDAGTPKDFTYCISFNKDLLTCWDPEENK
Sbjct: 1 MITFLPLLLGLSLGCTGAGGFVAHVESTCLLDDAGTPKDFTYCISFNKDLLTCWDPEENK 60
Query: 61 MAPCEFGVLNSLANVLSQHLNQKDTLMQRLRNGLQNCATHTQPFWGSLTNRTRPPSVQVA 120
MAPCEFGVLNSLANVLSQHLNQKDTLMQRLRNGLQNCATHTQPFWGSLTNRTRPPSVQVA
Sbjct: 61 MAPCEFGVLNSLANVLSQHLNQKDTLMQRLRNGLQNCATHTQPFWGSLTNRTRPPSVQVA 120
Query: 121 KTTPFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMPHSSAHKTAQPNGDWTYQTLSHL 180
KTTPFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMPHSSAHKTAQPNGDWTYQTLSHL
Sbjct: 121 KTTPFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMPHSSAHKTAQPNGDWTYQTLSHL 180
Query: 181 ALTPSYGDTYTCVVEHIGAPEPILRDWTPGLSPMQTLKVSVSAVTLGLGLIIFSLGVISW 240
ALTPSYGDTYTCVVEHIGAPEPILRDWTPGLSPMQTLKVSVSAVTLGLGLIIFSLGVISW
Sbjct: 181 ALTPSYGDTYTCVVEHIGAPEPILRDWTPGLSPMQTLKVSVSAVTLGLGLIIFSLGVISW 240
Query: 241 RRAGHSSYTPLPGSNYSEGWHIS 263
RRAGHSSYTPLPGSNYSEGWHIS
Sbjct: 241 RRAGHSSYTPLPGSNYSEGWHIS 263
>gi|239740855 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 3 isoform 1 [Homo sapiens]
Length = 267
Score = 82.8 bits (203), Expect = 3e-16
Identities = 58/190 (30%), Positives = 85/190 (44%), Gaps = 7/190 (3%)
Query: 65 EFGVLNSLANVLSQHLNQKDTLMQRLRNGLQNCATHTQPFWGSLTNRTRP-PSVQV--AK 121
E+ + L +++ N + L+++ R + N H S T + R P V V AK
Sbjct: 76 EYRAVRELGRPDAEYWNSQKDLLEQKRGQVDNYCRHNYGVGESFTVQRRVHPQVTVYPAK 135
Query: 122 TTPFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMPHSSAHKTAQPNGDWTYQTLSHLA 181
T P +L C V GFYP + + W +NG+ + Q NGDWT+QTL L
Sbjct: 136 TQPLQHHN--LLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQ-NGDWTFQTLVMLE 192
Query: 182 LTPSYGDTYTCVVEHIGAPEPILRDWTPGLSPMQTLKVS-VSAVTLGLGLIIFSLGVISW 240
P G+ YTC VEH P+ +W+ Q+ +S V LGL + L +
Sbjct: 193 TVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFR 252
Query: 241 RRAGHSSYTP 250
+ GHS P
Sbjct: 253 NQKGHSGLQP 262
>gi|239740853 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 3 isoform 2 [Homo sapiens]
Length = 266
Score = 82.8 bits (203), Expect = 3e-16
Identities = 58/190 (30%), Positives = 85/190 (44%), Gaps = 7/190 (3%)
Query: 65 EFGVLNSLANVLSQHLNQKDTLMQRLRNGLQNCATHTQPFWGSLTNRTRP-PSVQV--AK 121
E+ + L +++ N + L+++ R + N H S T + R P V V AK
Sbjct: 75 EYRAVRELGRPDAEYWNSQKDLLEQKRGQVDNYCRHNYGVGESFTVQRRVHPQVTVYPAK 134
Query: 122 TTPFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMPHSSAHKTAQPNGDWTYQTLSHLA 181
T P +L C V GFYP + + W +NG+ + Q NGDWT+QTL L
Sbjct: 135 TQPLQHHN--LLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQ-NGDWTFQTLVMLE 191
Query: 182 LTPSYGDTYTCVVEHIGAPEPILRDWTPGLSPMQTLKVS-VSAVTLGLGLIIFSLGVISW 240
P G+ YTC VEH P+ +W+ Q+ +S V LGL + L +
Sbjct: 192 TVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFR 251
Query: 241 RRAGHSSYTP 250
+ GHS P
Sbjct: 252 NQKGHSGLQP 261
>gi|24797076 major histocompatibility complex, class II, DP beta 1
precursor [Homo sapiens]
Length = 258
Score = 82.0 bits (201), Expect = 5e-16
Identities = 52/180 (28%), Positives = 79/180 (43%), Gaps = 3/180 (1%)
Query: 65 EFGVLNSLANVLSQHLNQKDTLMQRLRNGLQNCATHTQPFWGSLTNRTR-PPSVQVAKTT 123
EF + L +++ N + +++ R H G +T + R P V V+ +
Sbjct: 73 EFRAVTELGRPAAEYWNSQKDILEEKRAVPDRMCRHNYELGGPMTLQRRVQPRVNVSPSK 132
Query: 124 PFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMPHSSAHKTAQPNGDWTYQTLSHLALT 183
+ +L C+V FYP + + W NG+ + + NGDWT+Q L L +T
Sbjct: 133 KGPLQHHNLLVCHVTDFYPGSIQVRWFLNGQEETAGVVSTNLIR-NGDWTFQILVMLEMT 191
Query: 184 PSYGDTYTCVVEHIGAPEPILRDWTPGLSPMQTLKVSVSAVTLGLGLIIFSLGVISWRRA 243
P GD YTC VEH P+ +W S K A LGLII +G+ RR+
Sbjct: 192 PQQGDVYTCQVEHTSLDSPVTVEW-KAQSDSARSKTLTGAGGFVLGLIICGVGIFMHRRS 250
>gi|239758095 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 5 [Homo sapiens]
Length = 281
Score = 80.9 bits (198), Expect = 1e-15
Identities = 53/178 (29%), Positives = 82/178 (46%), Gaps = 14/178 (7%)
Query: 65 EFGVLNSLANVLSQHLNQKDTLMQRLRNGLQNCATHTQPFWGSLTNRTR-PPSVQVAKTT 123
EF + L +++ N + +++R R + H T + R P+V ++ +
Sbjct: 78 EFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRRVEPTVTISPSR 137
Query: 124 PFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMPHSSAHKTAQP---NGDWTYQTLSHL 180
+L C V FYPA++ + W +NG+ +A + P NGDWT+Q L L
Sbjct: 138 TEALNHHNLLVCSVTDFYPAQIKVRWFRNGQ----EETAGVVSTPLIRNGDWTFQILVML 193
Query: 181 ALTPSYGDTYTCVVEHIGAPEPILRDWTPGLSPMQTLKVS------VSAVTLGLGLII 232
+TP GD YTC VEH PI +W Q+ +S + + LGLGLII
Sbjct: 194 EMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLGLGLII 251
>gi|239740859 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 3 isoform 1 [Homo sapiens]
Length = 267
Score = 80.9 bits (198), Expect = 1e-15
Identities = 59/194 (30%), Positives = 85/194 (43%), Gaps = 15/194 (7%)
Query: 65 EFGVLNSLANVLSQHLNQKDTLMQRLRNGLQNCATHTQPFWGSLTNRTRP-PSVQV--AK 121
EF + L +++ N + L+++ R + N H S T + R P V V +K
Sbjct: 76 EFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTVQRRVHPKVTVYPSK 135
Query: 122 TTPFNTREPVMLACYVWGFYPAEVTITWRKNGKL----VMPHSSAHKTAQPNGDWTYQTL 177
T P +L C V GFYP + + W +NG+ V+ H NGDWT+QTL
Sbjct: 136 TQPLQHHN--LLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIH-----NGDWTFQTL 188
Query: 178 SHLALTPSYGDTYTCVVEHIGAPEPILRDWTPGLSPMQTLKVS-VSAVTLGLGLIIFSLG 236
L P G+ YTC VEH P+ +W Q+ +S V LGL + L
Sbjct: 189 VMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLGAGLF 248
Query: 237 VISWRRAGHSSYTP 250
+ + GHS P
Sbjct: 249 IYFRNQKGHSGLQP 262
>gi|239740857 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 3 isoform 2 [Homo sapiens]
Length = 266
Score = 80.9 bits (198), Expect = 1e-15
Identities = 59/194 (30%), Positives = 85/194 (43%), Gaps = 15/194 (7%)
Query: 65 EFGVLNSLANVLSQHLNQKDTLMQRLRNGLQNCATHTQPFWGSLTNRTRP-PSVQV--AK 121
EF + L +++ N + L+++ R + N H S T + R P V V +K
Sbjct: 75 EFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTVQRRVHPKVTVYPSK 134
Query: 122 TTPFNTREPVMLACYVWGFYPAEVTITWRKNGKL----VMPHSSAHKTAQPNGDWTYQTL 177
T P +L C V GFYP + + W +NG+ V+ H NGDWT+QTL
Sbjct: 135 TQPLQHHN--LLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIH-----NGDWTFQTL 187
Query: 178 SHLALTPSYGDTYTCVVEHIGAPEPILRDWTPGLSPMQTLKVS-VSAVTLGLGLIIFSLG 236
L P G+ YTC VEH P+ +W Q+ +S V LGL + L
Sbjct: 188 VMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLGAGLF 247
Query: 237 VISWRRAGHSSYTP 250
+ + GHS P
Sbjct: 248 IYFRNQKGHSGLQP 261
>gi|239740749 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 5 [Homo sapiens]
Length = 281
Score = 80.9 bits (198), Expect = 1e-15
Identities = 53/178 (29%), Positives = 82/178 (46%), Gaps = 14/178 (7%)
Query: 65 EFGVLNSLANVLSQHLNQKDTLMQRLRNGLQNCATHTQPFWGSLTNRTR-PPSVQVAKTT 123
EF + L +++ N + +++R R + H T + R P+V ++ +
Sbjct: 78 EFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRRVEPTVTISPSR 137
Query: 124 PFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMPHSSAHKTAQP---NGDWTYQTLSHL 180
+L C V FYPA++ + W +NG+ +A + P NGDWT+Q L L
Sbjct: 138 TEALNHHNLLVCSVTDFYPAQIKVRWFRNGQ----EETAGVVSTPLIRNGDWTFQILVML 193
Query: 181 ALTPSYGDTYTCVVEHIGAPEPILRDWTPGLSPMQTLKVS------VSAVTLGLGLII 232
+TP GD YTC VEH PI +W Q+ +S + + LGLGLII
Sbjct: 194 EMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLGLGLII 251
>gi|17986005 major histocompatibility complex, class II, DR beta 3
precursor [Homo sapiens]
Length = 266
Score = 79.7 bits (195), Expect = 2e-15
Identities = 57/190 (30%), Positives = 83/190 (43%), Gaps = 7/190 (3%)
Query: 65 EFGVLNSLANVLSQHLNQKDTLMQRLRNGLQNCATHTQPFWGSLTNRTRP-PSVQV--AK 121
E+ + L +++ N + L+++ R + N H S T + R P V V AK
Sbjct: 75 EYRAVTELGRPVAESWNSQKDLLEQKRGRVDNYCRHNYGVGESFTVQRRVHPQVTVYPAK 134
Query: 122 TTPFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMPHSSAHKTAQPNGDWTYQTLSHLA 181
T P +L C V GFYP + + W +NG+ + Q NGDWT+QTL L
Sbjct: 135 TQPLQHHN--LLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQ-NGDWTFQTLVMLE 191
Query: 182 LTPSYGDTYTCVVEHIGAPEPILRDWTPGLSPMQTLKVS-VSAVTLGLGLIIFSLGVISW 240
P G+ YTC VEH + +W Q+ +S V LGL + L +
Sbjct: 192 TVPRSGEVYTCQVEHPSVTSALTVEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFR 251
Query: 241 RRAGHSSYTP 250
+ GHS P
Sbjct: 252 NQKGHSGLQP 261
>gi|239748785 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-9 beta chain [Homo sapiens]
Length = 266
Score = 79.7 bits (195), Expect = 2e-15
Identities = 57/190 (30%), Positives = 82/190 (43%), Gaps = 7/190 (3%)
Query: 65 EFGVLNSLANVLSQHLNQKDTLMQRLRNGLQNCATHTQPFWGSLTNRTRP-PSVQV--AK 121
E+ + L +++ N + ++R R + H S T + R P V V AK
Sbjct: 75 EYRAVTELGRPVAESWNSQKDFLERRRAEVDTVCRHNYGVGESFTVQRRVHPEVTVYPAK 134
Query: 122 TTPFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMPHSSAHKTAQPNGDWTYQTLSHLA 181
T P +L C V GFYP + + W +NG+ + Q NGDWT+QTL L
Sbjct: 135 TQPLQHHN--LLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQ-NGDWTFQTLVMLE 191
Query: 182 LTPSYGDTYTCVVEHIGAPEPILRDWTPGLSPMQTLKVS-VSAVTLGLGLIIFSLGVISW 240
P G+ YTC VEH P+ +W Q+ +S V LGL + L +
Sbjct: 192 TVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFR 251
Query: 241 RRAGHSSYTP 250
+ GHS P
Sbjct: 252 NQKGHSGLQP 261
>gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo
sapiens]
Length = 266
Score = 79.0 bits (193), Expect = 4e-15
Identities = 58/194 (29%), Positives = 84/194 (43%), Gaps = 15/194 (7%)
Query: 65 EFGVLNSLANVLSQHLNQKDTLMQRLRNGLQNCATHTQPFWGSLTNRTRP-PSVQV--AK 121
EF + L +++ N + L+++ R + H S T + R P V V +K
Sbjct: 75 EFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTVQRRVHPKVTVYPSK 134
Query: 122 TTPFNTREPVMLACYVWGFYPAEVTITWRKNGKL----VMPHSSAHKTAQPNGDWTYQTL 177
T P +L C V GFYP + + W +NG+ V+ H NGDWT+QTL
Sbjct: 135 TQPLQHHN--LLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIH-----NGDWTFQTL 187
Query: 178 SHLALTPSYGDTYTCVVEHIGAPEPILRDWTPGLSPMQTLKVS-VSAVTLGLGLIIFSLG 236
L P G+ YTC VEH P+ +W Q+ +S V LGL + L
Sbjct: 188 VMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLGAGLF 247
Query: 237 VISWRRAGHSSYTP 250
+ + GHS P
Sbjct: 248 IYFRNQKGHSGLQP 261
>gi|239740745 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
Length = 266
Score = 78.6 bits (192), Expect = 5e-15
Identities = 56/190 (29%), Positives = 82/190 (43%), Gaps = 7/190 (3%)
Query: 65 EFGVLNSLANVLSQHLNQKDTLMQRLRNGLQNCATHTQPFWGSLTNRTRP-PSVQV--AK 121
E+ + L +++ N + +++ R + H S T + R P V V AK
Sbjct: 75 EYRAVTELGRPVAESWNSQKDILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAK 134
Query: 122 TTPFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMPHSSAHKTAQPNGDWTYQTLSHLA 181
T P +L C V GFYP + + W +NG+ + Q NGDWT+QTL L
Sbjct: 135 TQPLQHHN--LLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQ-NGDWTFQTLVMLE 191
Query: 182 LTPSYGDTYTCVVEHIGAPEPILRDWTPGLSPMQTLKVS-VSAVTLGLGLIIFSLGVISW 240
P G+ YTC VEH P+ +W Q+ +S V LGL + L +
Sbjct: 192 TVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFR 251
Query: 241 RRAGHSSYTP 250
+ GHS P
Sbjct: 252 NQKGHSGLQP 261
>gi|239740743 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
Length = 264
Score = 78.6 bits (192), Expect = 5e-15
Identities = 56/190 (29%), Positives = 82/190 (43%), Gaps = 7/190 (3%)
Query: 65 EFGVLNSLANVLSQHLNQKDTLMQRLRNGLQNCATHTQPFWGSLTNRTRP-PSVQV--AK 121
E+ + L +++ N + +++ R + H S T + R P V V AK
Sbjct: 73 EYRAVTELGRPVAESWNSQKDILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAK 132
Query: 122 TTPFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMPHSSAHKTAQPNGDWTYQTLSHLA 181
T P +L C V GFYP + + W +NG+ + Q NGDWT+QTL L
Sbjct: 133 TQPLQHHN--LLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQ-NGDWTFQTLVMLE 189
Query: 182 LTPSYGDTYTCVVEHIGAPEPILRDWTPGLSPMQTLKVS-VSAVTLGLGLIIFSLGVISW 240
P G+ YTC VEH P+ +W Q+ +S V LGL + L +
Sbjct: 190 TVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFR 249
Query: 241 RRAGHSSYTP 250
+ GHS P
Sbjct: 250 NQKGHSGLQP 259
>gi|239740695 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
Length = 266
Score = 78.6 bits (192), Expect = 5e-15
Identities = 56/190 (29%), Positives = 82/190 (43%), Gaps = 7/190 (3%)
Query: 65 EFGVLNSLANVLSQHLNQKDTLMQRLRNGLQNCATHTQPFWGSLTNRTRP-PSVQV--AK 121
E+ + L +++ N + +++ R + H S T + R P V V AK
Sbjct: 75 EYRAVTELGRPVAESWNSQKDILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAK 134
Query: 122 TTPFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMPHSSAHKTAQPNGDWTYQTLSHLA 181
T P +L C V GFYP + + W +NG+ + Q NGDWT+QTL L
Sbjct: 135 TQPLQHHN--LLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQ-NGDWTFQTLVMLE 191
Query: 182 LTPSYGDTYTCVVEHIGAPEPILRDWTPGLSPMQTLKVS-VSAVTLGLGLIIFSLGVISW 240
P G+ YTC VEH P+ +W Q+ +S V LGL + L +
Sbjct: 192 TVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFR 251
Query: 241 RRAGHSSYTP 250
+ GHS P
Sbjct: 252 NQKGHSGLQP 261
>gi|239740693 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
Length = 264
Score = 78.6 bits (192), Expect = 5e-15
Identities = 56/190 (29%), Positives = 82/190 (43%), Gaps = 7/190 (3%)
Query: 65 EFGVLNSLANVLSQHLNQKDTLMQRLRNGLQNCATHTQPFWGSLTNRTRP-PSVQV--AK 121
E+ + L +++ N + +++ R + H S T + R P V V AK
Sbjct: 73 EYRAVTELGRPVAESWNSQKDILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAK 132
Query: 122 TTPFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMPHSSAHKTAQPNGDWTYQTLSHLA 181
T P +L C V GFYP + + W +NG+ + Q NGDWT+QTL L
Sbjct: 133 TQPLQHHN--LLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQ-NGDWTFQTLVMLE 189
Query: 182 LTPSYGDTYTCVVEHIGAPEPILRDWTPGLSPMQTLKVS-VSAVTLGLGLIIFSLGVISW 240
P G+ YTC VEH P+ +W Q+ +S V LGL + L +
Sbjct: 190 TVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFR 249
Query: 241 RRAGHSSYTP 250
+ GHS P
Sbjct: 250 NQKGHSGLQP 259
>gi|155030211 major histocompatibility complex, class II, DR beta 1
precursor [Homo sapiens]
Length = 266
Score = 78.2 bits (191), Expect = 7e-15
Identities = 56/190 (29%), Positives = 82/190 (43%), Gaps = 7/190 (3%)
Query: 65 EFGVLNSLANVLSQHLNQKDTLMQRLRNGLQNCATHTQPFWGSLTNRTR-PPSVQV--AK 121
EF + L +++ N + ++++ R + H S T + R P V V +K
Sbjct: 75 EFRAVTELGRPDAEYWNSQKDILEQARAAVDTYCRHNYGVVESFTVQRRVQPKVTVYPSK 134
Query: 122 TTPFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMPHSSAHKTAQPNGDWTYQTLSHLA 181
T P +L C V GFYP + + W NG+ + Q NGDWT+QTL L
Sbjct: 135 TQPLQHHN--LLVCSVSGFYPGSIEVRWFLNGQEEKAGMVSTGLIQ-NGDWTFQTLVMLE 191
Query: 182 LTPSYGDTYTCVVEHIGAPEPILRDWTPGLSPMQTLKVS-VSAVTLGLGLIIFSLGVISW 240
P G+ YTC VEH P+ +W Q+ +S V LGL + L +
Sbjct: 192 TVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFR 251
Query: 241 RRAGHSSYTP 250
+ GHS P
Sbjct: 252 NQKGHSGLQP 261
>gi|239748788 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 5 isoform 2 [Homo sapiens]
Length = 281
Score = 78.2 bits (191), Expect = 7e-15
Identities = 52/178 (29%), Positives = 81/178 (45%), Gaps = 14/178 (7%)
Query: 65 EFGVLNSLANVLSQHLNQKDTLMQRLRNGLQNCATHTQPFWGSLTNRTR-PPSVQVAKTT 123
EF + L +++ N + +++R R + H T + R P+V ++ +
Sbjct: 78 EFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRRVEPTVTISPSR 137
Query: 124 PFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMPHSSAHKTAQP---NGDWTYQTLSHL 180
+L C V FYPA++ + W +N + +A + P NGDWT+Q L L
Sbjct: 138 TEALNHHNLLVCSVTDFYPAQIKVRWFRNDQ----EETAGVVSTPLIRNGDWTFQILVML 193
Query: 181 ALTPSYGDTYTCVVEHIGAPEPILRDWTPGLSPMQTLKVS------VSAVTLGLGLII 232
+TP GD YTC VEH PI +W Q+ +S + + LGLGLII
Sbjct: 194 EMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLGLGLII 251
>gi|239740863 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 5 [Homo sapiens]
Length = 281
Score = 78.2 bits (191), Expect = 7e-15
Identities = 52/178 (29%), Positives = 81/178 (45%), Gaps = 14/178 (7%)
Query: 65 EFGVLNSLANVLSQHLNQKDTLMQRLRNGLQNCATHTQPFWGSLTNRTR-PPSVQVAKTT 123
EF + L +++ N + +++R R + H T + R P+V ++ +
Sbjct: 78 EFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRRVEPTVTISPSR 137
Query: 124 PFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMPHSSAHKTAQP---NGDWTYQTLSHL 180
+L C V FYPA++ + W +N + +A + P NGDWT+Q L L
Sbjct: 138 TEALNHHNLLVCSVTDFYPAQIKVRWFRNDQ----EETAGVVSTPLIRNGDWTFQILVML 193
Query: 181 ALTPSYGDTYTCVVEHIGAPEPILRDWTPGLSPMQTLKVS------VSAVTLGLGLII 232
+TP GD YTC VEH PI +W Q+ +S + + LGLGLII
Sbjct: 194 EMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLGLGLII 251
>gi|239513955 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 5 [Homo sapiens]
Length = 281
Score = 78.2 bits (191), Expect = 7e-15
Identities = 52/178 (29%), Positives = 81/178 (45%), Gaps = 14/178 (7%)
Query: 65 EFGVLNSLANVLSQHLNQKDTLMQRLRNGLQNCATHTQPFWGSLTNRTR-PPSVQVAKTT 123
EF + L +++ N + +++R R + H T + R P+V ++ +
Sbjct: 78 EFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRRVEPTVTISPSR 137
Query: 124 PFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMPHSSAHKTAQP---NGDWTYQTLSHL 180
+L C V FYPA++ + W +N + +A + P NGDWT+Q L L
Sbjct: 138 TEALNHHNLLVCSVTDFYPAQIKVRWFRNDQ----EETAGVVSTPLIRNGDWTFQILVML 193
Query: 181 ALTPSYGDTYTCVVEHIGAPEPILRDWTPGLSPMQTLKVS------VSAVTLGLGLII 232
+TP GD YTC VEH PI +W Q+ +S + + LGLGLII
Sbjct: 194 EMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLGLGLII 251
>gi|24797074 major histocompatibility complex, class II, DP alpha 1
precursor [Homo sapiens]
Length = 260
Score = 77.8 bits (190), Expect = 9e-15
Identities = 76/255 (29%), Positives = 108/255 (42%), Gaps = 36/255 (14%)
Query: 7 LLLGLSLGCTGAGGFVA-HVESTCLLDDAGTPKDFTYCISFNKDLL---------TCWDP 56
L L L GAG A HV + P + F++D + T W
Sbjct: 18 LSLAFLLSLRGAGAIKADHVSTYAAFVQTHRPTG-EFMFEFDEDEMFYVDLDKKETVWHL 76
Query: 57 EENKMAPCEFGVLNSLANVLSQHLNQKDTLMQRLRNGLQNCATHTQPFWGSLTNRTRPPS 116
EE A F LAN+ + N +TL+QR + HTQ TN PP
Sbjct: 77 EEFGQA-FSFEAQGGLANIAILN-NNLNTLIQR--------SNHTQA-----TND--PPE 119
Query: 117 VQVAKTTPFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMPHSSAHKTAQPNGDWTYQT 176
V V P +P L C++ F+P + +TW NG+LV A P D+++
Sbjct: 120 VTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVT-EGVAESLFLPRTDYSFHK 178
Query: 177 LSHLALTPSYGDTYTCVVEHIGAPEPILRDWTPGLSPMQ---TLKVSVSAVTLGLGLIIF 233
+L PS D Y C VEH G +P+L+ W P+Q T + + A+ L LGL+
Sbjct: 179 FHYLTFVPSAEDFYDCRVEHWGLDQPLLKHW-EAQEPIQMPETTETVLCALGLVLGLVGI 237
Query: 234 SLG---VISWRRAGH 245
+G +I R+GH
Sbjct: 238 IVGTVLIIKSLRSGH 252
>gi|169168671 PREDICTED: similar to MHC class II antigen [Homo
sapiens]
Length = 241
Score = 77.0 bits (188), Expect = 2e-14
Identities = 47/132 (35%), Positives = 63/132 (47%), Gaps = 4/132 (3%)
Query: 120 AKTTPFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMPHSSAHKTAQPNGDWTYQTLSH 179
AKT P + R P L C V GFYP + + W +NG+ + Q NGDWT+QTL
Sbjct: 108 AKTEPLHHRNP--LVCSVSGFYPGSIEVRWFQNGQEEKAAVVSIGLIQ-NGDWTFQTLVM 164
Query: 180 LALTPSYGDTYTCVVEHIGAPEPILRDWTPGLSPMQTLKVS-VSAVTLGLGLIIFSLGVI 238
L P G+ YTC VEH P+ +W+ Q+ +S V LGL + L +
Sbjct: 165 LETVPRSGEVYTCQVEHPSVTSPLTVEWSARTESAQSKMLSGVGGFVLGLLFLGTGLFIY 224
Query: 239 SWRRAGHSSYTP 250
+ GHS P
Sbjct: 225 FRNQKGHSGLQP 236
>gi|4504403 major histocompatibility complex, class II, DO beta
precursor [Homo sapiens]
Length = 273
Score = 77.0 bits (188), Expect = 2e-14
Identities = 59/237 (24%), Positives = 94/237 (39%), Gaps = 14/237 (5%)
Query: 11 LSLGCTGAGGFVAHVESTCLLDDAGTPKDFTYCISFNKDLLTCWDPEENKMAPCEFGVLN 70
++ G FV ++ C + F FN + +D + F L
Sbjct: 23 MTQGTDSPEDFVIQAKADCYFTNGTEKVQFVVRFIFNLEEYVRFDSDVGM-----FVALT 77
Query: 71 SLANVLSQHLNQKDTLMQRLRNGLQNCATHTQPFWGSLT--NRTRPPSVQVAKTTPFNTR 128
L ++ N + L++R R + H T + +P + TP
Sbjct: 78 KLGQPDAEQWNSRLDLLERSRQAVDGVCRHNYRLGAPFTVGRKVQPEVTVYPERTPL-LH 136
Query: 129 EPVMLACYVWGFYPAEVTITWRKNGKLVMPHSSAHKTAQP--NGDWTYQTLSHLALTPSY 186
+ +L C V GFYP ++ I W NG+ + + P NGDWT+QT+ L +TP
Sbjct: 137 QHNLLHCSVTGFYPGDIKIKWFLNGQ---EERAGVMSTGPIRNGDWTFQTVVMLEMTPEL 193
Query: 187 GDTYTCVVEHIGAPEPILRDWTPGLSPMQTLKVSVSAVTLGLGLIIFSLGVISWRRA 243
G YTC+V+H P+ +W S K+ LGLI +G++ RA
Sbjct: 194 GHVYTCLVDHSSLLSPVSVEWR-AQSEYSWRKMLSGIAAFLLGLIFLLVGIVIQLRA 249
>gi|52630344 major histocompatibility complex, class II, DR beta 4
precursor [Homo sapiens]
Length = 266
Score = 75.9 bits (185), Expect = 3e-14
Identities = 56/190 (29%), Positives = 83/190 (43%), Gaps = 7/190 (3%)
Query: 65 EFGVLNSLANVLSQHLNQKDTLMQRLRNGLQNCATHTQPFWGSLTNRTR-PPSVQV--AK 121
E+ + L +++ N + L++R R + + S T + R P V V +K
Sbjct: 75 EYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTVQRRVQPKVTVYPSK 134
Query: 122 TTPFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMPHSSAHKTAQPNGDWTYQTLSHLA 181
T P +L C V GFYP + + W +NG+ + Q NGDWT+QTL L
Sbjct: 135 TQPLQHHN--LLVCSVNGFYPGSIEVRWFRNGQEEKAGVVSTGLIQ-NGDWTFQTLVMLE 191
Query: 182 LTPSYGDTYTCVVEHIGAPEPILRDWTPGLSPMQTLKVS-VSAVTLGLGLIIFSLGVISW 240
P G+ YTC VEH P+ W+ Q+ +S V LGL + L +
Sbjct: 192 TVPRSGEVYTCQVEHPSMMSPLTVQWSARSESAQSKMLSGVGGFVLGLLFLGTGLFIYFR 251
Query: 241 RRAGHSSYTP 250
+ GHS P
Sbjct: 252 NQKGHSGLQP 261
>gi|239758090 PREDICTED: major histocompatibility complex, class II,
DR beta 4 [Homo sapiens]
Length = 278
Score = 75.9 bits (185), Expect = 3e-14
Identities = 56/190 (29%), Positives = 83/190 (43%), Gaps = 7/190 (3%)
Query: 65 EFGVLNSLANVLSQHLNQKDTLMQRLRNGLQNCATHTQPFWGSLTNRTR-PPSVQV--AK 121
E+ + L +++ N + L++R R + + S T + R P V V +K
Sbjct: 87 EYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTVQRRVQPKVTVYPSK 146
Query: 122 TTPFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMPHSSAHKTAQPNGDWTYQTLSHLA 181
T P +L C V GFYP + + W +NG+ + Q NGDWT+QTL L
Sbjct: 147 TQPLQHHN--LLVCSVNGFYPGSIEVRWFRNGQEEKAGVVSTGLIQ-NGDWTFQTLVMLE 203
Query: 182 LTPSYGDTYTCVVEHIGAPEPILRDWTPGLSPMQTLKVS-VSAVTLGLGLIIFSLGVISW 240
P G+ YTC VEH P+ W+ Q+ +S V LGL + L +
Sbjct: 204 TVPRSGEVYTCQVEHPSMMSPLTVQWSARSESAQSKMLSGVGGFVLGLLFLGTGLFIYFR 263
Query: 241 RRAGHSSYTP 250
+ GHS P
Sbjct: 264 NQKGHSGLQP 273
>gi|169168591 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 5 isoform 1 [Homo sapiens]
Length = 261
Score = 75.9 bits (185), Expect = 3e-14
Identities = 49/166 (29%), Positives = 77/166 (46%), Gaps = 14/166 (8%)
Query: 77 SQHLNQKDTLMQRLRNGLQNCATHTQPFWGSLTNRTR-PPSVQVAKTTPFNTREPVMLAC 135
+++ N + +++R R + H T + R P+V ++ + +L C
Sbjct: 90 AEYWNSQKEVLERTRASVDTVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVC 149
Query: 136 YVWGFYPAEVTITWRKNGKLVMPHSSAHKTAQP---NGDWTYQTLSHLALTPSYGDTYTC 192
V FYPA++ + W +N + +A + P NGDWT+Q L L +TP GD YTC
Sbjct: 150 SVTDFYPAQIKVRWFRNDQ----EETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTC 205
Query: 193 VVEHIGAPEPILRDWTPGLSPMQTLKVS------VSAVTLGLGLII 232
VEH PI +W Q+ +S + + LGLGLII
Sbjct: 206 HVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLGLGLII 251
>gi|239740920 PREDICTED: similar to major histocompatibility
complex, class II, DQ beta 1 isoform 2 [Homo sapiens]
Length = 261
Score = 75.9 bits (185), Expect = 3e-14
Identities = 49/166 (29%), Positives = 77/166 (46%), Gaps = 14/166 (8%)
Query: 77 SQHLNQKDTLMQRLRNGLQNCATHTQPFWGSLTNRTR-PPSVQVAKTTPFNTREPVMLAC 135
+++ N + +++R R L H T + R P+V ++ + +L C
Sbjct: 90 AEYWNSQKEVLERTRAELDTVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVC 149
Query: 136 YVWGFYPAEVTITWRKNGKLVMPHSSAHKTAQP---NGDWTYQTLSHLALTPSYGDTYTC 192
V FYPA++ + W +N + + + P NGDWT+Q L L +TP GD YTC
Sbjct: 150 SVTDFYPAQIKVRWFRNDQ----EETTGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTC 205
Query: 193 VVEHIGAPEPILRDWTPGLSPMQTLKVS------VSAVTLGLGLII 232
VEH PI+ +W Q+ +S + + LGLGLII
Sbjct: 206 HVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVLGLIFLGLGLII 251
>gi|239740918 PREDICTED: similar to major histocompatibility
complex, class II, DQ beta 1 isoform 1 [Homo sapiens]
Length = 281
Score = 75.9 bits (185), Expect = 3e-14
Identities = 49/166 (29%), Positives = 77/166 (46%), Gaps = 14/166 (8%)
Query: 77 SQHLNQKDTLMQRLRNGLQNCATHTQPFWGSLTNRTR-PPSVQVAKTTPFNTREPVMLAC 135
+++ N + +++R R L H T + R P+V ++ + +L C
Sbjct: 90 AEYWNSQKEVLERTRAELDTVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVC 149
Query: 136 YVWGFYPAEVTITWRKNGKLVMPHSSAHKTAQP---NGDWTYQTLSHLALTPSYGDTYTC 192
V FYPA++ + W +N + + + P NGDWT+Q L L +TP GD YTC
Sbjct: 150 SVTDFYPAQIKVRWFRNDQ----EETTGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTC 205
Query: 193 VVEHIGAPEPILRDWTPGLSPMQTLKVS------VSAVTLGLGLII 232
VEH PI+ +W Q+ +S + + LGLGLII
Sbjct: 206 HVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVLGLIFLGLGLII 251
>gi|150418002 major histocompatibility complex, class II, DQ beta 1
precursor [Homo sapiens]
Length = 261
Score = 75.1 bits (183), Expect = 6e-14
Identities = 51/168 (30%), Positives = 77/168 (45%), Gaps = 18/168 (10%)
Query: 77 SQHLNQKDTLMQRLRNGLQNCATHTQP--FWGSLTNRTRPP-SVQVAKTTPFNTREPVML 133
+++ N + +++ R L H F G L R P ++ ++T N +L
Sbjct: 90 AEYWNSQKEVLEGTRAELDTVCRHNYEVAFRGILQRRVEPTVTISPSRTEALNHHN--LL 147
Query: 134 ACYVWGFYPAEVTITWRKNGKLVMPHSSAHKTAQP---NGDWTYQTLSHLALTPSYGDTY 190
C V FYP ++ + W +N + +A + P NGDWT+Q L L +TP GD Y
Sbjct: 148 VCSVTDFYPGQIKVRWFRNDQ----EETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVY 203
Query: 191 TCVVEHIGAPEPILRDWTPGLSPMQTLKVS------VSAVTLGLGLII 232
TC VEH PI +W Q+ +S + + LGLGLII
Sbjct: 204 TCHVEHPSLQSPITVEWRAQSESAQSKMLSGVGGFVLGLIFLGLGLII 251
>gi|52426774 major histocompatibility complex, class II, DR alpha
precursor [Homo sapiens]
Length = 254
Score = 75.1 bits (183), Expect = 6e-14
Identities = 46/127 (36%), Positives = 64/127 (50%), Gaps = 3/127 (2%)
Query: 114 PPSVQVAKTTPFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMPHSSAHKTAQPNGDWT 173
PP V V +P REP +L C++ F P V +TW +NGK V S P D
Sbjct: 111 PPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVS-ETVFLPREDHL 169
Query: 174 YQTLSHLALTPSYGDTYTCVVEHIGAPEPILRDWT-PGLSPM-QTLKVSVSAVTLGLGLI 231
++ +L PS D Y C VEH G EP+L+ W SP+ +T + V A+ L +GL+
Sbjct: 170 FRKFHYLPFLPSTEDVYDCRVEHWGLDEPLLKHWEFDAPSPLPETTENVVCALGLTVGLV 229
Query: 232 IFSLGVI 238
+G I
Sbjct: 230 GIIIGTI 236
>gi|149158702 major histocompatibility complex, class I, F isoform 1
precursor [Homo sapiens]
Length = 442
Score = 73.2 bits (178), Expect = 2e-13
Identities = 44/135 (32%), Positives = 71/135 (52%), Gaps = 8/135 (5%)
Query: 111 RTRPPSVQVAKTTPFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMPHSSAHKTAQPNG 170
R PP VA P + E L C+ GFYPAE+T+TW+++G+ + +T +P G
Sbjct: 202 RADPPKAHVAHH-PISDHEAT-LRCWALGFYPAEITLTWQRDGEEQTQDTELVET-RPAG 258
Query: 171 DWTYQTLSHLALTPSYGDTYTCVVEHIGAPEPILRDWTPGLSPMQTLK-VSVSAVTLGLG 229
D T+Q + + + P YTC V+H G P+P++ W SP T+ V + A + LG
Sbjct: 259 DGTFQKWAAVVVPPGEEQRYTCHVQHEGLPQPLILRWEQ--SPQPTIPIVGIVAGLVVLG 316
Query: 230 LIIFS--LGVISWRR 242
++ + + WR+
Sbjct: 317 AVVTGAVVAAVMWRK 331
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,575,570
Number of Sequences: 37866
Number of extensions: 535362
Number of successful extensions: 1464
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 1289
Number of HSP's gapped (non-prelim): 175
length of query: 263
length of database: 18,247,518
effective HSP length: 100
effective length of query: 163
effective length of database: 14,460,918
effective search space: 2357129634
effective search space used: 2357129634
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.