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Search of human proteins with 4502899
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4502899 clathrin, light polypeptide A isoform a [Homo
sapiens]
(218 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4502899 clathrin, light polypeptide A isoform a [Homo sapiens] 442 e-124
gi|115527060 clathrin, light polypeptide A isoform c [Homo sapiens] 431 e-121
gi|6005993 clathrin, light polypeptide A isoform b [Homo sapiens] 426 e-120
gi|4502901 clathrin, light polypeptide isoform a [Homo sapiens] 250 6e-67
gi|6005995 clathrin, light polypeptide isoform b [Homo sapiens] 239 1e-63
gi|4506467 radixin [Homo sapiens] 40 0.001
gi|7662230 ring finger protein 40 [Homo sapiens] 40 0.001
gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo sa... 39 0.003
gi|239745079 PREDICTED: Putative golgin subfamily A member 6-lik... 39 0.003
gi|169208458 PREDICTED: similar to golgi autoantigen, golgin sub... 38 0.006
gi|4505257 moesin [Homo sapiens] 38 0.006
gi|154937324 hypothetical protein LOC440295 [Homo sapiens] 38 0.006
gi|4827046 U2 small nuclear RNA auxiliary factor 1-like 2 [Homo ... 38 0.008
gi|148839382 ring finger protein 169 [Homo sapiens] 38 0.008
gi|153792074 proline rich 12 [Homo sapiens] 38 0.008
gi|239745153 PREDICTED: similar to Putative golgin subfamily A m... 37 0.013
gi|239745127 PREDICTED: similar to Putative golgin subfamily A m... 37 0.013
gi|239756241 PREDICTED: golgi autoantigen, golgin subfamily a-li... 37 0.017
gi|239745259 PREDICTED: hypothetical protein isoform 2 [Homo sap... 37 0.017
gi|84043963 eukaryotic translation initiation factor 5B [Homo sa... 36 0.022
gi|221219020 NYD-SP11 protein [Homo sapiens] 36 0.029
gi|222446603 golgi autoantigen, golgin subfamily a-like [Homo sa... 36 0.029
gi|239745095 PREDICTED: hypothetical protein LOC645202 [Homo sap... 36 0.029
gi|239745299 PREDICTED: hypothetical protein [Homo sapiens] 35 0.038
gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo ... 35 0.038
gi|209915594 transcription factor 3 isoform E47 [Homo sapiens] 35 0.038
gi|31377566 ring finger protein 168 [Homo sapiens] 35 0.038
gi|157671915 guanylate binding protein family, member 6 [Homo sa... 35 0.038
gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo s... 35 0.038
gi|41322923 plectin 1 isoform 11 [Homo sapiens] 35 0.049
>gi|4502899 clathrin, light polypeptide A isoform a [Homo sapiens]
Length = 218
Score = 442 bits (1137), Expect = e-124
Identities = 218/218 (100%), Positives = 218/218 (100%)
Query: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER 120
GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER
Sbjct: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER 120
Query: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIDESSPGTE 180
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIDESSPGTE
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIDESSPGTE 180
Query: 181 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 218
WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 218
>gi|115527060 clathrin, light polypeptide A isoform c [Homo sapiens]
Length = 236
Score = 431 bits (1108), Expect = e-121
Identities = 218/236 (92%), Positives = 218/236 (92%), Gaps = 18/236 (7%)
Query: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER 120
GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER
Sbjct: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER 120
Query: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------ 162
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV 180
Query: 163 AAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 218
AAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 AAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 236
>gi|6005993 clathrin, light polypeptide A isoform b [Homo sapiens]
Length = 248
Score = 426 bits (1096), Expect = e-120
Identities = 218/248 (87%), Positives = 218/248 (87%), Gaps = 30/248 (12%)
Query: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER 120
GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER
Sbjct: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER 120
Query: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------ 162
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV 180
Query: 163 ------------AAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS 210
AAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS
Sbjct: 181 TNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS 240
Query: 211 LKQAPLVH 218
LKQAPLVH
Sbjct: 241 LKQAPLVH 248
>gi|4502901 clathrin, light polypeptide isoform a [Homo sapiens]
Length = 211
Score = 250 bits (639), Expect = 6e-67
Identities = 126/197 (63%), Positives = 148/197 (75%), Gaps = 1/197 (0%)
Query: 21 NGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAPGPQPHGEPPG-GPDAVDGVM 79
+G A EEDPAAAFLAQQESEIAGIENDE F G P G G G + + +
Sbjct: 13 SGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSHAAPAQPGPTSGAGSEDMGTTV 72
Query: 80 NGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMERLEALDANSRKQEAEWKEKA 139
NG+ +QE+NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA S+ E EW+EKA
Sbjct: 73 NGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKVTEQEWREKA 132
Query: 140 IKELEEWYARQDEQLQKTKANNRAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAK 199
K+LEEW RQ EQ++K K NNRA+EEAFV + E +PGTEWE+VA+LCDFNPKSSKQ K
Sbjct: 133 KKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQLCDFNPKSSKQCK 192
Query: 200 DVSRMRSVLISLKQAPL 216
DVSR+RSVL+SLKQ PL
Sbjct: 193 DVSRLRSVLMSLKQTPL 209
>gi|6005995 clathrin, light polypeptide isoform b [Homo sapiens]
Length = 229
Score = 239 bits (610), Expect = 1e-63
Identities = 126/215 (58%), Positives = 148/215 (68%), Gaps = 19/215 (8%)
Query: 21 NGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAPGPQPHGEPPG-GPDAVDGVM 79
+G A EEDPAAAFLAQQESEIAGIENDE F G P G G G + + +
Sbjct: 13 SGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSHAAPAQPGPTSGAGSEDMGTTV 72
Query: 80 NGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMERLEALDANSRKQEAEWKEKA 139
NG+ +QE+NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA S+ E EW+EKA
Sbjct: 73 NGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKVTEQEWREKA 132
Query: 140 IKELEEWYARQDEQLQKTKANNR------------------AAEEAFVNDIDESSPGTEW 181
K+LEEW RQ EQ++K K NNR A+EEAFV + E +PGTEW
Sbjct: 133 KKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADIIGYVASEEAFVKESKEETPGTEW 192
Query: 182 ERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPL 216
E+VA+LCDFNPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 193 EKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPL 227
>gi|4506467 radixin [Homo sapiens]
Length = 583
Score = 40.4 bits (93), Expect = 0.001
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 104 QSEPESIRKWREEQMERLEALDANSRKQEAEWKEKAIK--ELEEWYARQDEQLQKTKANN 161
+ E E I + +EE MERL+ ++ + K + E +E+ K EL++ R E+ ++ +
Sbjct: 334 EKEKERIEREKEELMERLKQIEEQTIKAQKELEEQTRKALELDQERKRAKEEAERLEKER 393
Query: 162 RAAEEA 167
RAAEEA
Sbjct: 394 RAAEEA 399
>gi|7662230 ring finger protein 40 [Homo sapiens]
Length = 1001
Score = 40.4 bits (93), Expect = 0.001
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 16/163 (9%)
Query: 46 IENDEAFAILDGGAPGPQPHG-EPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQ 104
+ ++E F + GA GP G EP P G S GP +A+S+ DR
Sbjct: 583 VPSEEDFQGITPGAQGPSSRGREPEARPKRELREREGP----SLGPPPVASALSRADR-- 636
Query: 105 SEPESIRKWREEQMERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAA 164
E + + + ++ E L+ L A +K A+ +K +K L + Y ++ Q+ K AA
Sbjct: 637 -EKAKVEETKRKESELLKGLRAELKK--AQESQKEMKLLLDMYKSAPKE-QRDKVQLMAA 692
Query: 165 EEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSV 207
E ++DE R+ L + + + SK+ D +R +
Sbjct: 693 ERKAKAEVDELR-----SRIRELEERDRRESKKIADEDALRRI 730
>gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo
sapiens]
Length = 750
Score = 39.3 bits (90), Expect = 0.003
Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 9/113 (7%)
Query: 99 QVDRLQSEPESIRKWRE---EQMERLEALDANSRKQEAEW--KEKAIKELEEWYARQDEQ 153
Q +++Q + E IR+ E EQ E + + +QE + +E+ ++E EE RQ+E+
Sbjct: 617 QEEKIQEQEEKIREQEEKIREQEEMTQEQEEKMGEQEEKMCEQEEKMQEQEETMWRQEEK 676
Query: 154 LQKTKANNRAAEEAFVNDIDESSPGTE---WERVARLCDFNPKSSKQAKDVSR 203
+++ + R EE + + +E E WE+ ++C+ K +Q + + R
Sbjct: 677 IREQEKKIREQEEK-IREQEEMMQEQEEKMWEQEEKMCEQEEKMQEQEEKMRR 728
Score = 37.7 bits (86), Expect = 0.008
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 12/111 (10%)
Query: 99 QVDRLQSEPESIRK-----WREEQMERLEALDANSRKQEAEWK-EKAIKELEEWYARQDE 152
Q D++ + E IR+ WR+E+ R E + ++E WK E+ I+E EE Q+E
Sbjct: 568 QEDKMWRQEEKIREQEEKVWRQEEKIR-EQEEKRQEQEEKMWKQEEKIREQEEKIQEQEE 626
Query: 153 QLQKTKANNRAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSR 203
++++ + R EE + E G E+ ++C+ K +Q + + R
Sbjct: 627 KIREQEEKIREQEE--MTQEQEEKMG---EQEEKMCEQEEKMQEQEETMWR 672
Score = 32.0 bits (71), Expect = 0.42
Identities = 23/114 (20%), Positives = 54/114 (47%), Gaps = 11/114 (9%)
Query: 99 QVDRLQSEPESIRK-----WREEQ----MERLEALDANSRKQEAEWKEKAIKELEEWYAR 149
Q ++++ + E IR+ WR+E+ E + + +QE W+E+ +E E+ R
Sbjct: 515 QEEKIREQEEKIREQEEKMWRQEEKIREQEEMWREEEKMHEQEKIWEEEKRQEQEDKMWR 574
Query: 150 QDEQLQKTKANNRAAEEAFVNDIDESSPGTE--WERVARLCDFNPKSSKQAKDV 201
Q+E++++ + EE ++ E W++ ++ + K +Q + +
Sbjct: 575 QEEKIREQEEKVWRQEEKIREQEEKRQEQEEKMWKQEEKIREQEEKIQEQEEKI 628
Score = 30.8 bits (68), Expect = 0.93
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 9/68 (13%)
Query: 99 QVDRLQSEPESIRKWREEQMERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTK 158
Q +++ + E I++W E+ E+ E + R+QE + I+E EE RQ+E + + +
Sbjct: 298 QEEKMWRQEEKIQEWEEKIQEQEEKI----REQEEK-----IREQEEKMRRQEEMMWEKE 348
Query: 159 ANNRAAEE 166
R EE
Sbjct: 349 EKMRRQEE 356
Score = 30.4 bits (67), Expect = 1.2
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 113 WREEQMERLEALDANSRKQEAE-WK-EKAIKELEEWYARQDEQLQKTKANNRAAEEAFVN 170
WR Q E++ + RKQE + W+ E+ I+E EE Q+E++ + + R EE +
Sbjct: 492 WR--QKEKMHEQEEKIRKQEEKVWRQEEKIREQEEKIREQEEKMWRQEEKIREQEEMWRE 549
Query: 171 DIDESSPGTEWERVAR 186
+ WE R
Sbjct: 550 EEKMHEQEKIWEEEKR 565
Score = 28.9 bits (63), Expect = 3.5
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 14/81 (17%)
Query: 99 QVDRLQSEPESIRKWREEQMERLEAL-----DANSRKQEAEWK--------EKAIKELEE 145
Q ++++ + E IR+ +EE+M R E + + R++E W+ E+ + E EE
Sbjct: 319 QEEKIREQEEKIRE-QEEKMRRQEEMMWEKEEKMRRQEEMMWEKEEKMRRQEEMMWEKEE 377
Query: 146 WYARQDEQLQKTKANNRAAEE 166
RQ+E + + + R EE
Sbjct: 378 KMRRQEEMMWEKEEKIRELEE 398
Score = 28.1 bits (61), Expect = 6.0
Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 17/123 (13%)
Query: 97 ISQVDRLQSEPESIRKWREEQMERLEALDANSRKQEAEWK-----------EKAIKELEE 145
I +++ E E IR+ E++ E E + ++QE E K E+ I+E E+
Sbjct: 393 IRELEEKMHEQEKIREQEEKRQEE-EKIREQEKRQEQEAKMWRQEEKIREQEEKIREQEK 451
Query: 146 WYARQDEQL---QKTKANNRAAEEAFVNDIDESSPGTE--WERVARLCDFNPKSSKQAKD 200
RQ+E++ +K + + E+ + +E E W + ++ + K KQ +
Sbjct: 452 KMWRQEEKIHEQEKIREEEKRQEQEEMWRQEEKIHEQEEIWRQKEKMHEQEEKIRKQEEK 511
Query: 201 VSR 203
V R
Sbjct: 512 VWR 514
>gi|239745079 PREDICTED: Putative golgin subfamily A member 6-like
protein 6 [Homo sapiens]
Length = 724
Score = 38.9 bits (89), Expect = 0.003
Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 99 QVDRLQSEPESIRKWREEQMERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTK 158
Q ++++ + E IR+ E E+ E + K E +EK ++E EE RQ+E++++ +
Sbjct: 590 QEEKIREQEEKIREQEEMTQEQEEKMGEQEEKM-CEQEEK-MQEQEEKMRRQEEKIREQE 647
Query: 159 ANNRAAEEAFVNDIDESSPGTE---WERVARLCDFNPKSSKQAKDVSR 203
R EE + + +E E WE+ ++C+ K +Q + + R
Sbjct: 648 KKIREQEEK-IREQEEMMQEQEEKMWEQEEKMCEQEEKMQEQEEKMRR 694
Score = 34.7 bits (78), Expect = 0.065
Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 11/103 (10%)
Query: 99 QVDRLQSEPESIRKWREEQMERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTK 158
Q +++ + E I++W E+ E+ E + R+QE + I+E EE RQ+E + + +
Sbjct: 359 QEEKMWRQEEKIQEWEEKIQEQEEKI----REQEEK-----IREQEEKMRRQEEMMWEKE 409
Query: 159 ANNRAAEEAFVNDIDESSPGTE--WERVARLCDFNPKSSKQAK 199
R EE ++ E WE+ ++ + K +Q K
Sbjct: 410 EKMRRQEEMMWEKEEKMRRQEEMMWEKEEKIRELEEKMHEQEK 452
Score = 33.9 bits (76), Expect = 0.11
Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 21/112 (18%)
Query: 99 QVDRLQSEPESIRK-----WREEQMERLEALDANSRKQEAE-WK-EKAIKELEEWYARQD 151
Q +++ + E IRK WR+E E++ + R+QE + W+ E+ I+E EE Q+
Sbjct: 541 QKEKIHEQEEKIRKQEEKMWRQE--EKMHDQEEKIREQEEKVWRQEEKIREQEEKIREQE 598
Query: 152 EQLQKTKANNRAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSR 203
E++++ + + EE E+ ++C+ K +Q + + R
Sbjct: 599 EKIREQEEMTQEQEEKM------------GEQEEKMCEQEEKMQEQEEKMRR 638
Score = 28.5 bits (62), Expect = 4.6
Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 17/123 (13%)
Query: 97 ISQVDRLQSEPESIRKWREEQMERLEALDANSRKQEAEWK-----------EKAIKELEE 145
I +++ E E IR+ E++ E E + ++QE E K E+ I+E EE
Sbjct: 440 IRELEEKMHEQEKIREQEEKRQEE-EKIREQEKRQEQEAKMWRQEEKIREQEEKIREQEE 498
Query: 146 WYARQDEQL---QKTKANNRAAEEAFVNDIDESSPGTE--WERVARLCDFNPKSSKQAKD 200
RQ+E++ +K + + E+ + +E E W + ++ + K KQ +
Sbjct: 499 KMWRQEEKIHEQEKIREEEKRQEQEEMWRQEEKIREQEEIWRQKEKIHEQEEKIRKQEEK 558
Query: 201 VSR 203
+ R
Sbjct: 559 MWR 561
Score = 28.1 bits (61), Expect = 6.0
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 106 EPESIRKWREEQ-MERLEALDANSRKQEAEWKEK-AIKELEEWYARQDEQLQKTKANNRA 163
E E IR+ + Q E + + R+QE W++K I E EE +Q+E++ + +
Sbjct: 509 EQEKIREEEKRQEQEEMWRQEEKIREQEEIWRQKEKIHEQEEKIRKQEEKMWRQEEKMHD 568
Query: 164 AEE 166
EE
Sbjct: 569 QEE 571
>gi|169208458 PREDICTED: similar to golgi autoantigen, golgin
subfamily a-like [Homo sapiens]
Length = 432
Score = 38.1 bits (87), Expect = 0.006
Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 85 QESNGPTDSYAAISQVDRLQSEPESIRKWREEQMERLEALDANSRKQEAEWK--EKAIKE 142
Q GP+ + + L+ E ES+ + + ++E + L +R+QE + E+ ++E
Sbjct: 151 QPPAGPSKVEQLQDETNHLRKELESVGRQLQAEVENNQMLSLLNRRQEERLREQEERLRE 210
Query: 143 LEEWYARQDEQLQKTKANNRAAEEAFVNDIDESSPGTE--WERVARLCDFNPKSSKQAKD 200
EE Q+E+L + + R EE E PG E E V +L + +Q +
Sbjct: 211 QEERLCEQEERLCEQEERLREQEERLCE--QEKLPGQERLLEEVEKLLKQERRQEEQERL 268
Query: 201 VSRMR 205
+ R R
Sbjct: 269 LERER 273
>gi|4505257 moesin [Homo sapiens]
Length = 577
Score = 38.1 bits (87), Expect = 0.006
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 104 QSEPESIRKWREEQMERLEALDANSRK--QEAEWKEKAIKELEEWYARQDEQLQKTKANN 161
+ E E I + +EE MERL+ ++ ++K QE E + + ELE+ R + +K
Sbjct: 334 EKEKEKIEREKEELMERLKQIEEQTKKAQQELEEQTRRALELEQERKRAQSEAEKLAKER 393
Query: 162 RAAEEA 167
+ AEEA
Sbjct: 394 QEAEEA 399
Score = 30.8 bits (68), Expect = 0.93
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 102 RLQSEPESIRKWREEQMERLEALDANSRKQEAEWKEKAIKELEEWYARQDE-QLQKTKAN 160
R QSE E + K R+E E EAL SR Q+ ++ A+ E+ E AR + ++ + K
Sbjct: 381 RAQSEAEKLAKERQEAEEAKEALLQASRDQKKTQEQLAL-EMAELTARISQLEMARQKKE 439
Query: 161 NRAAE 165
+ A E
Sbjct: 440 SEAVE 444
>gi|154937324 hypothetical protein LOC440295 [Homo sapiens]
Length = 432
Score = 38.1 bits (87), Expect = 0.006
Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 85 QESNGPTDSYAAISQVDRLQSEPESIRKWREEQMERLEALDANSRKQEAEWK--EKAIKE 142
Q GP+ + + L+ E ES+ + + ++E + L +R+QE + E+ ++E
Sbjct: 151 QPPAGPSKVEQLQDETNHLRKELESVGRQLQAEVENNQMLSLLNRRQEERLREQEERLRE 210
Query: 143 LEEWYARQDEQLQKTKANNRAAEEAFVNDIDESSPGTE--WERVARLCDFNPKSSKQAKD 200
EE Q+E+L + + R EE E PG E E V +L + +Q +
Sbjct: 211 QEERLCEQEERLCEQEERLREQEERLCE--QEKLPGQERLLEEVEKLLKQERRQEEQERL 268
Query: 201 VSRMR 205
+ R R
Sbjct: 269 LERER 273
>gi|4827046 U2 small nuclear RNA auxiliary factor 1-like 2 [Homo
sapiens]
Length = 482
Score = 37.7 bits (86), Expect = 0.008
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 13/97 (13%)
Query: 102 RLQSEPESIRKWREEQMERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANN 161
R++ E E K R+E+ ER K + +W+E+ KE EE ++ E+ +K +A
Sbjct: 87 RIKKEKEEAAKKRQEEQER---------KLKEQWEEQQRKEREEEEQKRQEKKEKEEALQ 137
Query: 162 RAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQA 198
+ ++A +E GT W+ DF +A
Sbjct: 138 KMLDQAE----NELENGTTWQNPEPPVDFRVMEKDRA 170
>gi|148839382 ring finger protein 169 [Homo sapiens]
Length = 708
Score = 37.7 bits (86), Expect = 0.008
Identities = 42/159 (26%), Positives = 63/159 (39%), Gaps = 27/159 (16%)
Query: 9 APAGAPGGP---ALGNGVAGAGEEDPAAAFLAQQESEIAG-----IENDEAFAILDGGAP 60
A A PG P A G G A D Q +SE+ G + + DGGA
Sbjct: 96 ADAAGPGCPRCRARGPGWARRRARDDG-----QADSEVLGECARRSQPERCRPRRDGGAA 150
Query: 61 --GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQM 118
GP+P EP P D + +S+ L+ E ES+RK REE++
Sbjct: 151 AAGPRPEQEPRAAPAEPDFIFRAPI------------KLSKPGELREEYESLRKLREEKL 198
Query: 119 ERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKT 157
+ + + K E E ++++E R + + KT
Sbjct: 199 QEEKPSEDQIHKLLPEDTETGKRKMDEQKKRDEPLVLKT 237
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 37.7 bits (86), Expect = 0.008
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 6 PFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGG----APG 61
P G PA P GP +GAG E P + E+ N E ++ G AP
Sbjct: 981 PPGPPAYDPYGPYCPGRASGAGPETPGLGLDPNKPPELPSTVNAEPLGLIQSGPHQAAPP 1040
Query: 62 PQPHGEPPGGP 72
P P PP P
Sbjct: 1041 PPPPPPPPPAP 1051
>gi|239745153 PREDICTED: similar to Putative golgin subfamily A
member 6-like protein 6 [Homo sapiens]
Length = 655
Score = 37.0 bits (84), Expect = 0.013
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 102 RLQSEPESIRKWREEQMERLEALDANSRKQEAE-WK-EKAIKELEEWYARQDEQLQKTKA 159
R Q E + WR+E+ R + D R+QE E W+ E+ I+ELEE Q+E+L++ +
Sbjct: 398 REQEEKRQEKMWRQEKKMREQ--DEKIREQEEEMWRQEEKIRELEEMMQDQEEKLREVEE 455
Query: 160 NNRAAEE 166
+ EE
Sbjct: 456 KMQEEEE 462
Score = 32.7 bits (73), Expect = 0.25
Identities = 25/122 (20%), Positives = 60/122 (49%), Gaps = 17/122 (13%)
Query: 99 QVDRLQSEPESIRK-----WREEQMERLEALDANSRKQEAE-WK-EKAIKELEEWYARQD 151
Q +++ + E IR+ WR+E E++ + R+QE + W+ E+ I+E +E Q+
Sbjct: 330 QEEKMHEQEEKIREQEDKMWRQE--EKIREQEEKIREQEEKMWRQEEKIREQDEKIQEQE 387
Query: 152 EQLQKTKANNRAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISL 211
E++ + +E + + +E W + ++ + + K +Q +++ R + L
Sbjct: 388 EEMWR--------QEEKIREQEEKRQEKMWRQEKKMREQDEKIREQEEEMWRQEEKIREL 439
Query: 212 KQ 213
++
Sbjct: 440 EE 441
Score = 30.8 bits (68), Expect = 0.93
Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 99 QVDRLQSEPESIRKWREE---QMERLEALDANSRKQEAEWKE--KAIKELEEWYARQDEQ 153
Q +++ + E IR+ EE Q E++ L+ + QE + +E + ++E EE Q+E+
Sbjct: 411 QEKKMREQDEKIREQEEEMWRQEEKIRELEEMMQDQEEKLREVEEKMQEEEEKMQEQEEK 470
Query: 154 LQKTKANNRAAEE 166
+Q+ + + EE
Sbjct: 471 IQRQEEKIQEQEE 483
Score = 27.7 bits (60), Expect = 7.9
Identities = 16/75 (21%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 92 DSYAAISQVDRLQSEPESIRKWREEQMERLEALDANSRKQEAEWKEKAIKELEEWYARQD 151
D + +V+ E E + +EE+++R E + ++E W+++ + + EE Q+
Sbjct: 445 DQEEKLREVEEKMQEEEEKMQEQEEKIQRQE--EKIQEQEEKTWRQEKLLKQEEKIWEQE 502
Query: 152 EQLQKTKANNRAAEE 166
E++ + + EE
Sbjct: 503 EKMWRQEEKMWEQEE 517
>gi|239745127 PREDICTED: similar to Putative golgin subfamily A
member 6-like protein 6 [Homo sapiens]
Length = 655
Score = 37.0 bits (84), Expect = 0.013
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 102 RLQSEPESIRKWREEQMERLEALDANSRKQEAE-WK-EKAIKELEEWYARQDEQLQKTKA 159
R Q E + WR+E+ R + D R+QE E W+ E+ I+ELEE Q+E+L++ +
Sbjct: 398 REQEEKRQEKMWRQEKKMREQ--DEKIREQEEEMWRQEEKIRELEEMMQDQEEKLREVEE 455
Query: 160 NNRAAEE 166
+ EE
Sbjct: 456 KMQEEEE 462
Score = 32.7 bits (73), Expect = 0.25
Identities = 25/122 (20%), Positives = 60/122 (49%), Gaps = 17/122 (13%)
Query: 99 QVDRLQSEPESIRK-----WREEQMERLEALDANSRKQEAE-WK-EKAIKELEEWYARQD 151
Q +++ + E IR+ WR+E E++ + R+QE + W+ E+ I+E +E Q+
Sbjct: 330 QEEKMHEQEEKIREQEDKMWRQE--EKIREQEEKIREQEEKMWRQEEKIREQDEKIQEQE 387
Query: 152 EQLQKTKANNRAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISL 211
E++ + +E + + +E W + ++ + + K +Q +++ R + L
Sbjct: 388 EEMWR--------QEEKIREQEEKRQEKMWRQEKKMREQDEKIREQEEEMWRQEEKIREL 439
Query: 212 KQ 213
++
Sbjct: 440 EE 441
Score = 30.8 bits (68), Expect = 0.93
Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 99 QVDRLQSEPESIRKWREE---QMERLEALDANSRKQEAEWKE--KAIKELEEWYARQDEQ 153
Q +++ + E IR+ EE Q E++ L+ + QE + +E + ++E EE Q+E+
Sbjct: 411 QEKKMREQDEKIREQEEEMWRQEEKIRELEEMMQDQEEKLREVEEKMQEEEEKMQEQEEK 470
Query: 154 LQKTKANNRAAEE 166
+Q+ + + EE
Sbjct: 471 IQRQEEKIQEQEE 483
Score = 27.7 bits (60), Expect = 7.9
Identities = 16/75 (21%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 92 DSYAAISQVDRLQSEPESIRKWREEQMERLEALDANSRKQEAEWKEKAIKELEEWYARQD 151
D + +V+ E E + +EE+++R E + ++E W+++ + + EE Q+
Sbjct: 445 DQEEKLREVEEKMQEEEEKMQEQEEKIQRQE--EKIQEQEEKTWRQEKLLKQEEKIWEQE 502
Query: 152 EQLQKTKANNRAAEE 166
E++ + + EE
Sbjct: 503 EKMWRQEEKMWEQEE 517
>gi|239756241 PREDICTED: golgi autoantigen, golgin subfamily a-like
[Homo sapiens]
Length = 899
Score = 36.6 bits (83), Expect = 0.017
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 12/114 (10%)
Query: 99 QVDRLQSEPESIRKWREEQMERLEALDANSRKQEAEWK----EKAIKELEEWYARQDEQL 154
Q RL+ + + +R+ +E E+ E + + QE E K E+ ++E EE RQ+E+L
Sbjct: 319 QEKRLREQEKELREQEKELREQKELREQEEQMQEQEEKMWEQEEKMREQEEKMWRQEERL 378
Query: 155 QKTKANNRAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAK---DVSRMR 205
+ + R E+ + D +E WE+ RL + + +Q K V +MR
Sbjct: 379 WEQEKQMREQEQK-MRDQEERM----WEQDERLREKEERMREQEKMWEQVEKMR 427
Score = 33.5 bits (75), Expect = 0.14
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 9/75 (12%)
Query: 99 QVDRLQSEPESIRK-----WREEQMERLEALDANSRKQEAE-WK-EKAIKELEEWYARQD 151
Q + L+ + + IRK WR+E ERL + R+QE + W+ EK ++E E+ Q+
Sbjct: 277 QEEELREQEKKIRKQEEKMWRQE--ERLREQEGKMREQEEKMWRQEKRLREQEKELREQE 334
Query: 152 EQLQKTKANNRAAEE 166
++L++ K E+
Sbjct: 335 KELREQKELREQEEQ 349
Score = 33.1 bits (74), Expect = 0.19
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 101 DRLQSEPESIRKWREEQMERLEALDANSRKQEAEW---KEKAIKELEEWYARQDEQLQKT 157
+++ + E +R+ ++ Q + + D + QE E +EK ++E EE Q+E++QK
Sbjct: 417 EKMWEQVEKMREEKKMQEQEKKTRDQEEKMQEEERIREREKKMREEEETMREQEEKMQKQ 476
Query: 158 KANNRAAEE 166
+ N EE
Sbjct: 477 EENMWEQEE 485
Score = 31.6 bits (70), Expect = 0.55
Identities = 23/118 (19%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 99 QVDRLQSEPESIRKWREEQMERLEALDANSRKQEAE-W--------------KEKAIKEL 143
Q D++ + E +R ++ ++ E ++ +++QE + W +EK ++E
Sbjct: 542 QEDQMWEQEEKMRDQEQKMWDQEERMEKKTQEQEKKTWDQEEKMREEERMREREKKMREE 601
Query: 144 EEWYARQDEQLQKTKANNRAAEEAFVNDIDESSPGTE--WERVARLCDFNPKSSKQAK 199
EE Q+E++Q+ + + EE ++ E WE+ ++ + K +Q +
Sbjct: 602 EEMMREQEEKMQEQEEKMQEQEEKMWEQEEKMQEQEEKMWEQEEKMWEQEEKMWEQQR 659
Score = 30.8 bits (68), Expect = 0.93
Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 10/78 (12%)
Query: 97 ISQVDRLQSEPESIRKWREEQMERL------EALDANSRKQEAEWKE--KAIKELEEWYA 148
+ + +++Q + E I W +E+ME+ + D ++E +E K ++E EE
Sbjct: 673 MQEQEKMQEQEEKI--WEQEKMEKKTQEQEKKTWDQEKMREEESMREREKKMREEEEMMR 730
Query: 149 RQDEQLQKTKANNRAAEE 166
Q+E++Q+ + + EE
Sbjct: 731 EQEEKMQEQEEKMQEQEE 748
Score = 27.7 bits (60), Expect = 7.9
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 129 RKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIDESSPGTEWERVARLC 188
+++E +EK I++ EE RQ+E+L++ + R EE W + RL
Sbjct: 277 QEEELREQEKKIRKQEEKMWRQEERLREQEGKMREQEEKM------------WRQEKRLR 324
Query: 189 DFNPKSSKQAKDVSRMRSV 207
+ + +Q K++ + +
Sbjct: 325 EQEKELREQEKELREQKEL 343
>gi|239745259 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 432
Score = 36.6 bits (83), Expect = 0.017
Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 24/143 (16%)
Query: 67 EPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMERLEALDA 126
EPP GP V+ + + + + L+ E ES+ + + ++E + L
Sbjct: 151 EPPAGPSKVEQLQD------------------ETNHLRKELESVGRQLQAEVENNQMLSL 192
Query: 127 NSRKQEAEWK--EKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIDESSPGTE--WE 182
+R+QE + E+ ++E EE Q+E+L + + EE E PG E E
Sbjct: 193 LNRRQEERLREQEERLREQEERLHEQEERLCEQEERLCEQEERLCE--QEKLPGQERLLE 250
Query: 183 RVARLCDFNPKSSKQAKDVSRMR 205
V +L + + +Q + + R R
Sbjct: 251 EVEKLLEQERRQEEQERLLERER 273
>gi|84043963 eukaryotic translation initiation factor 5B [Homo
sapiens]
Length = 1220
Score = 36.2 bits (82), Expect = 0.022
Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 8/91 (8%)
Query: 85 QESNGPTDSYAAISQ--VDRLQSEPESIRKWREEQMERLEALDANSRKQE------AEWK 136
++ GP+ + Q + +L+ E E ++ EE+++RLE L+A +++E E K
Sbjct: 331 EKKKGPSKATVKAMQEALAKLKEEEERQKREEEERIKRLEELEAKRKEEERLEQEKRERK 390
Query: 137 EKAIKELEEWYARQDEQLQKTKANNRAAEEA 167
++ KE +E ++ + L K++ RA EA
Sbjct: 391 KQKEKERKERLKKEGKLLTKSQREARARAEA 421
>gi|221219020 NYD-SP11 protein [Homo sapiens]
Length = 2873
Score = 35.8 bits (81), Expect = 0.029
Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 10/144 (6%)
Query: 75 VDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMERLEALDANSRKQEAE 134
VD V + E++ E + + + L SE E R+ EE+ E + RK+E E
Sbjct: 2217 VDEVESEEHFSEEM--ESLLDELEKQESLSSEEEEEREEEEEREEEEVREEEEERKEEEE 2274
Query: 135 WKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIDESSPGTEWERVARLCD--FNP 192
+EK +++ EE ++ ++ +K K + EE F +E E L D
Sbjct: 2275 GEEKQVEKEEE--EKKKKKKEKKKEEVQEKEEVF----EEKEEIMSEEETESLSDEEEEE 2328
Query: 193 KSSKQAKDVSRMRSVLISLKQAPL 216
+S ++V R + +L KQ L
Sbjct: 2329 ESCSLEEEVDREKEILKKEKQFKL 2352
>gi|222446603 golgi autoantigen, golgin subfamily a-like [Homo
sapiens]
Length = 668
Score = 35.8 bits (81), Expect = 0.029
Identities = 25/114 (21%), Positives = 52/114 (45%), Gaps = 12/114 (10%)
Query: 99 QVDRLQSEPESIRKWREEQMERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTK 158
Q ++++ + E IR+ E E+ E + K + + K ++ EE Q+E++++ K
Sbjct: 528 QEEKIREQEEKIREQEEMMQEQEEKMGEQEEKMQEQEK---MRRQEEKIREQEEKIREQK 584
Query: 159 ANNRAAEEAF------VNDIDESSPGTE---WERVARLCDFNPKSSKQAKDVSR 203
R EE + + +E E WE+ ++C+ K +Q + + R
Sbjct: 585 EKIREQEEKIWEQEEKIREQEEMMQEQEEKMWEQEEKMCEQEEKMQEQEEKMRR 638
Score = 33.9 bits (76), Expect = 0.11
Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 11/103 (10%)
Query: 99 QVDRLQSEPESIRKWREEQMERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTK 158
Q +++ + E I++W E+ E+ E + R+QE + I+E EE RQ+E + + +
Sbjct: 298 QEEKMWRQEEKIQEWEEKIQEQEEKI----REQEEK-----IREQEEKMRRQEEMMWEKE 348
Query: 159 ANNRAAEEAFVNDIDESSPGTE--WERVARLCDFNPKSSKQAK 199
R EE ++ E WE+ ++ + K +Q K
Sbjct: 349 EKMRRQEEMMWEKEEKMRRLEEMMWEKEEKIRELEEKMHEQEK 391
Score = 32.7 bits (73), Expect = 0.25
Identities = 17/73 (23%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 99 QVDRLQSEPESIRK-----WREEQMERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQ 153
Q +++ + E IR+ WR+E+ R + ++++ +E+ ++E EE Q+E+
Sbjct: 500 QEEKMHDQEEKIREQEEKMWRQEEKIREQEEKIREQEEKIREQEEMMQEQEEKMGEQEEK 559
Query: 154 LQKTKANNRAAEE 166
+Q+ + R E+
Sbjct: 560 MQEQEKMRRQEEK 572
Score = 30.0 bits (66), Expect = 1.6
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 9/68 (13%)
Query: 106 EPESIRK-----WREEQMERLEALDANSRKQEAE-WK-EKAIKELEEWYARQDEQLQKTK 158
E E IRK WR+E E++ + R+QE + W+ E+ I+E EE Q+E++++ +
Sbjct: 486 EQEKIRKQEEKVWRQE--EKMHDQEEKIREQEEKMWRQEEKIREQEEKIREQEEKIREQE 543
Query: 159 ANNRAAEE 166
+ EE
Sbjct: 544 EMMQEQEE 551
Score = 28.9 bits (63), Expect = 3.5
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 10/76 (13%)
Query: 101 DRLQSEPESIRKWRE--EQMERLEALDANSRKQEAEWK--------EKAIKELEEWYARQ 150
+ + + E IR+ E Q E++ + +++E W+ E+ I+E EE RQ
Sbjct: 462 EEMWRQEEKIREQEEIWRQKEKMHEQEKIRKQEEKVWRQEEKMHDQEEKIREQEEKMWRQ 521
Query: 151 DEQLQKTKANNRAAEE 166
+E++++ + R EE
Sbjct: 522 EEKIREQEEKIREQEE 537
>gi|239745095 PREDICTED: hypothetical protein LOC645202 [Homo
sapiens]
Length = 570
Score = 35.8 bits (81), Expect = 0.029
Identities = 26/109 (23%), Positives = 56/109 (51%), Gaps = 8/109 (7%)
Query: 99 QVDRLQSEPESIRKWREEQMERLEALDANSRKQEAEWK-EKAIKELEEWYARQDEQLQKT 157
Q ++++ + E IR+ E E+ E + ++E W+ E+ ++E EE RQ+E++++
Sbjct: 388 QEEKIREQEEKIREQEEMMQEQEEKM---GEQEEKMWEQEEEMQEQEEKMRRQEEKIREQ 444
Query: 158 KANNRAAEEAFVNDIDESSPGTE---WERVARLCDFNPKSSKQAKDVSR 203
+ R EE + + +E E E+ ++C+ K +Q + + R
Sbjct: 445 EKKIREQEEK-IREQEEMMQEQEEKMGEQEGKMCEQEAKMQEQEEKMRR 492
Score = 33.1 bits (74), Expect = 0.19
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 19/104 (18%)
Query: 102 RLQSEPESIRKW------REEQMERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQ 155
+LQ++ E W +EE+M R E R+++ + +E+ I+E EE RQ+E +
Sbjct: 268 KLQAQVEENELWNRLNQQQEEKMWRQEE-KIQEREEKIQEQEEKIREQEEKMRRQEEMMW 326
Query: 156 KTKANNRAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAK 199
+ + R EE WE+ ++ + K +Q K
Sbjct: 327 EKEEKMRRQEEMM------------WEKEEKIRELEEKMHEQEK 358
Score = 32.3 bits (72), Expect = 0.32
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 97 ISQVDRLQSEPESIRKWREEQMERLEALDANSRKQEAEWK----EKAIKELEEWYARQDE 152
I +++ E E IR+ E++ E E + ++QE E K E+ I+E EE Q+E
Sbjct: 346 IRELEEKMHEQEKIREQEEKRQEE-EKIREQEKRQEQEAKMWRQEEKIREQEEKIREQEE 404
Query: 153 QLQKTKANNRAAEE 166
+Q+ + EE
Sbjct: 405 MMQEQEEKMGEQEE 418
Score = 29.6 bits (65), Expect = 2.1
Identities = 14/61 (22%), Positives = 32/61 (52%)
Query: 106 EPESIRKWREEQMERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAE 165
+ + + WR+E+ R + +++ + +E+ + E EE Q+E++Q+ + R E
Sbjct: 379 QEQEAKMWRQEEKIREQEEKIREQEEMMQEQEEKMGEQEEKMWEQEEEMQEQEEKMRRQE 438
Query: 166 E 166
E
Sbjct: 439 E 439
Score = 29.6 bits (65), Expect = 2.1
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 25/104 (24%)
Query: 116 EQMERLEALDANSRKQEAEWKE--KAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDID 173
EQ +++ + R+QE + +E K I+E EE Q+E +Q+ +
Sbjct: 478 EQEAKMQEQEEKMRRQEEKIREQEKKIREQEEKIREQEEMMQEQEEK------------- 524
Query: 174 ESSPGTEWERVARLCDFNPKSSKQAKDVSR----MRSVLISLKQ 213
WE+ ++C+ K +Q + + R MR + L+Q
Sbjct: 525 ------MWEQEEKMCEQEEKMQEQEEKMRRQEEKMREQEVRLRQ 562
>gi|239745299 PREDICTED: hypothetical protein [Homo sapiens]
Length = 523
Score = 35.4 bits (80), Expect = 0.038
Identities = 31/142 (21%), Positives = 59/142 (41%), Gaps = 29/142 (20%)
Query: 67 EPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMERLEALDA 126
EPP GP V+ + + + + L+ E ES+ + + ++E + L
Sbjct: 151 EPPAGPSKVEQLQD------------------ETNHLRKELESVGRQLQAEVENNQMLSL 192
Query: 127 NSRKQEAEWK---------EKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIDESSP 177
+R+QE + E+ ++E EE Q+E+L++ + R EE +
Sbjct: 193 LNRRQEERLREQEERLREQEERLREQEERLCEQEERLREQEERLREQEERLCEQEERLRE 252
Query: 178 GTE--WERVARLCDFNPKSSKQ 197
E E+ RLC+ + +Q
Sbjct: 253 HEERLCEQEERLCEQEERLREQ 274
>gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo
sapiens]
Length = 1691
Score = 35.4 bits (80), Expect = 0.038
Identities = 28/86 (32%), Positives = 35/86 (40%), Gaps = 18/86 (20%)
Query: 5 DPFGAPAGAPGGPA-------LGNGVAG----AGEEDPAAAFLAQQESEIAGIENDEAFA 53
D P G PG P+ L N +G GE+ P + GI+ D F
Sbjct: 429 DGLPGPPGPPGPPSPEFETETLHNKESGFPGLRGEQGPKGNL------GLKGIKGDSGFC 482
Query: 54 ILDGGAPGPQPHGEP-PGGPDAVDGV 78
DGG P P GEP P GP + G+
Sbjct: 483 ACDGGVPNTGPPGEPGPPGPWGLIGL 508
>gi|209915594 transcription factor 3 isoform E47 [Homo sapiens]
Length = 651
Score = 35.4 bits (80), Expect = 0.038
Identities = 46/215 (21%), Positives = 77/215 (35%), Gaps = 34/215 (15%)
Query: 11 AGAPGG--PALGNGVAGAGE--EDPAAAFLAQQESEIAGIEND-----EAFAILDGGAPG 61
AGAPG P+ G+ G ED + S G D L G G
Sbjct: 372 AGAPGALSPSYDGGLHGLQSKIEDHLDEAIHVLRSHAVGTAGDMHTLLPGHGALASGFTG 431
Query: 62 PQP----HGEPPGGPDAVDGVMNGEYYQESNG--------------PTDSYAAISQVDRL 103
P H GG DG+ ++ P DSY+ + +
Sbjct: 432 PMSLGGRHAGLVGGSHPEDGLAGSTSLMHNHAALPSQPGTLPDLSRPPDSYSGLGRAGAT 491
Query: 104 QSEPESIRKWREEQMERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQL--QKTKANN 161
+ E R+ +E++ A + K+E + +E + +++ L ++ + N
Sbjct: 492 AAASEIKREEKEDEENTSAADHSEEEKKELKAPRARTSSTDEVLSLEEKDLRDRERRMAN 551
Query: 162 RAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSK 196
A E V DI+E+ + + R+C + KS K
Sbjct: 552 NARERVRVRDINEA-----FRELGRMCQMHLKSDK 581
>gi|31377566 ring finger protein 168 [Homo sapiens]
Length = 571
Score = 35.4 bits (80), Expect = 0.038
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 15/130 (11%)
Query: 85 QESNGPTDSYAAISQVDRLQSEPESIRKWREEQMERL----EALDANSRKQEAEWKEKAI 140
QES D Y + RL S+P +R+ EE++ ++ A + K E+ ++ +
Sbjct: 95 QESEEVADDYQPV----RLLSKPGELRREYEEEISKVAAERRASEEEENKASEEYIQRLL 150
Query: 141 KELEEWYARQDEQLQKTKANNRAAEEAF-------VNDIDESSPGTEWERVARLCDFNPK 193
E EE RQ E+ ++ ++E +N+ E S + PK
Sbjct: 151 AEEEEEEKRQAEKRRRAMEEQLKSDEELARKLSIDINNFCEGSISASPLNSRKSDPVTPK 210
Query: 194 SSKQAKDVSR 203
S K++K+ R
Sbjct: 211 SEKKSKNKQR 220
>gi|157671915 guanylate binding protein family, member 6 [Homo
sapiens]
Length = 633
Score = 35.4 bits (80), Expect = 0.038
Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 11/146 (7%)
Query: 78 VMNGEYYQESNGPTDSYAAISQVDRL-----QSEPESIRKWREEQMERLEALDANSRKQE 132
V+ Q TD A++ VDR + E E +++ +EQ +++EA D + ++
Sbjct: 469 VIEESILQSDKALTDREKAVA-VDRAKKEAAEKEQELLKQKLQEQQQQMEAQDKSRKENI 527
Query: 133 AEWKEKAIKELEEWYARQDEQLQKT-KANNRAAEEAFVNDIDESSPGTEWERVARLCDF- 190
A+ KEK E E Q L+ T K N E F +E + E + R+ D
Sbjct: 528 AQLKEKLQMEREHLLREQIMMLEHTQKVQNDWLHEGFKKKYEEMN--AEISQFKRMIDTT 585
Query: 191 -NPKSSKQAKDVSRMRSVLISLKQAP 215
N + A+ + + L ++ AP
Sbjct: 586 KNDDTPWIARTLDNLADELTAILSAP 611
>gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo
sapiens]
Length = 1690
Score = 35.4 bits (80), Expect = 0.038
Identities = 28/86 (32%), Positives = 35/86 (40%), Gaps = 18/86 (20%)
Query: 5 DPFGAPAGAPGGPA-------LGNGVAG----AGEEDPAAAFLAQQESEIAGIENDEAFA 53
D P G PG P+ L N +G GE+ P + GI+ D F
Sbjct: 428 DGLPGPPGPPGPPSPEFETETLHNKESGFPGLRGEQGPKGNL------GLKGIKGDSGFC 481
Query: 54 ILDGGAPGPQPHGEP-PGGPDAVDGV 78
DGG P P GEP P GP + G+
Sbjct: 482 ACDGGVPNTGPPGEPGPPGPWGLIGL 507
>gi|41322923 plectin 1 isoform 11 [Homo sapiens]
Length = 4547
Score = 35.0 bits (79), Expect = 0.049
Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 14/135 (10%)
Query: 92 DSYAAISQVDRLQSEPESIRKWREEQMERLEALDANSRKQEAEWKEKAIK---ELEEWYA 148
+ AAI + RL++E E K +E + ERL L + Q +E+A + ++EE A
Sbjct: 1837 EKLAAIGEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAAQHKADIEERLA 1896
Query: 149 RQDEQLQKTKANNRAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAK---DVSRMR 205
QL+K + ++ V D E E +A F ++ +A+ ++ R+R
Sbjct: 1897 ----QLRKASDSELERQKGLVEDTLRQRRQVEEEILALKASFEKAAAGKAELELELGRIR 1952
Query: 206 S----VLISLKQAPL 216
S L S +QA L
Sbjct: 1953 SNAEDTLRSKEQAEL 1967
Score = 32.3 bits (72), Expect = 0.32
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Query: 98 SQVDR-LQSEPESIRKWREEQMERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQK 156
+Q++R LQ E ++ + REE R A + + +E+A +ELE W + +E L+
Sbjct: 1590 AQLERSLQEEHVAVAQLREEAERR-----AQQQAEAERAREEAERELERWQLKANEALRL 1644
Query: 157 TKANNRAAEEAFVNDIDESSPGTEWERVAR 186
A++ + + E ER AR
Sbjct: 1645 RLQAEEVAQQKSLAQAEAEKQKEEAEREAR 1674
Score = 28.9 bits (63), Expect = 3.5
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 98 SQVDRLQSEPESIRKWREEQME---RLEALDANSRKQEAEWKEKAIKELEEWYARQDEQL 154
S +D+L+ E E+ R+ EE E + E A SR+Q E + E+ AR Q
Sbjct: 2074 SVLDQLRGEAEAARRAAEEAEEARVQAEREAAQSRRQVEEAERLKQSAEEQAQARAQAQA 2133
Query: 155 QKTKANNRAAEEA 167
K A +EA
Sbjct: 2134 AAEKLRKEAEQEA 2146
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.308 0.128 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,426,581
Number of Sequences: 37866
Number of extensions: 574584
Number of successful extensions: 4468
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 298
Number of HSP's that attempted gapping in prelim test: 3692
Number of HSP's gapped (non-prelim): 953
length of query: 218
length of database: 18,247,518
effective HSP length: 98
effective length of query: 120
effective length of database: 14,536,650
effective search space: 1744398000
effective search space used: 1744398000
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.