Guide to the Human Genome
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Name: LOC440243 Sequence: fasta or formatted (724aa) NCBI GI: 239745079
Description:

PREDICTED: Putative golgin subfamily A member 6-like protein 6

Referenced in:

ER, Golgi, and the Secretory Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         33           2
 C cysteine            0.7          5           1
 D aspartate           1.7         12           1
 E glutamate          23.3        169           3
 F phenylalanine       0.1          1           1
 G glycine             3.0         22           3
 H histidine           3.5         25           2
 I isoleucine          4.6         33           1
 K lysine             10.8         78           4
 L leucine             6.4         46           3
 M methionine          4.8         35           2
 N asparagine          1.4         10           2
 P proline             2.5         18           1
 Q glutamine          12.0         87           3
 R arginine            7.9         57           3
 S serine              3.5         25           2
 T threonine           3.5         25           3
 V valine              2.2         16           1
 W tryptophan          2.9         21           1
 Y tyrosine            0.8          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: Putative golgin subfamily A member 6-lik... 
LOC283767             0.836   golgi autoantigen, golgin subfamily a-like 
LOC727832             0.808   golgi autoantigen, golgin subfamily a-like 
LOC645202             0.655   PREDICTED: hypothetical protein LOC645202 
LOC283685             0.522   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC283685             0.497   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC100132816          0.337   PREDICTED: similar to Putative golgin subfamily A m...
LOC400352             0.335   PREDICTED: similar to Putative golgin subfamily A m...
LOC100133758          0.257   PREDICTED: hypothetical protein, partial 
LOC283685             0.209   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC100133220          0.163   PREDICTED: hypothetical protein 
TCHH                  0.146   trichohyalin 
GOLGA2                0.146   Golgi autoantigen, golgin subfamily a, 2 
GOLGA6                0.143   golgi autoantigen, golgin subfamily a, 6 
GOLGA6C               0.141   PREDICTED: golgi autoantigen, golgin subfamily a, 6C...
GOLGA6D               0.140   golgi autoantigen, golgin subfamily a, 6D 
GOLGA6B               0.139   golgi autoantigen, golgin subfamily a, 6B 
LOC647042             0.136   PREDICTED: hypothetical protein isoform 1 
LOC651807             0.133   PREDICTED: hypothetical protein 
WDR87                 0.117   NYD-SP11 protein 
LOC728636             0.107   PREDICTED: similar to golgi autoantigen, golgin sub...
LOC440295             0.107   hypothetical protein LOC440295 
LOC647042             0.106   PREDICTED: hypothetical protein isoform 2 
LOC728080             0.087   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC727909             0.087   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728047             0.086   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728080             0.086   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728047             0.086   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC727909             0.086   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653061             0.085   PREDICTED: similar to Golgin subfamily A member 8-l...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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