Guide to the Human Genome
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Name: LOC440295 Sequence: fasta or formatted (432aa) NCBI GI: 154937324
Description:

hypothetical protein LOC440295

Referenced in:

ER, Golgi, and the Secretory Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         35           4
 C cysteine            1.2          5           1
 D aspartate           1.6          7           1
 E glutamate          17.1         74           2
 F phenylalanine       0.7          3           1
 G glycine             6.9         30           2
 H histidine           1.6          7           1
 I isoleucine          2.1          9           2
 K lysine              5.6         24           3
 L leucine            12.3         53           2
 M methionine          1.2          5           1
 N asparagine          3.2         14           2
 P proline             5.3         23           2
 Q glutamine           9.0         39           2
 R arginine            8.8         38           2
 S serine              6.2         27           3
 T threonine           3.5         15           2
 V valine              3.0         13           1
 W tryptophan          1.4          6           1
 Y tyrosine            1.2          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC440295 
LOC728636             1.000   PREDICTED: similar to golgi autoantigen, golgin sub...
LOC647042             0.984   PREDICTED: hypothetical protein isoform 2 
LOC647042             0.954   PREDICTED: hypothetical protein isoform 1 
LOC100133220          0.595   PREDICTED: hypothetical protein 
LOC653061             0.233   PREDICTED: similar to Golgin subfamily A member 8-l...
GOLGA6D               0.225   golgi autoantigen, golgin subfamily a, 6D 
GOLGA6C               0.225   PREDICTED: golgi autoantigen, golgin subfamily a, 6C...
GOLGA6                0.225   golgi autoantigen, golgin subfamily a, 6 
GOLGA6B               0.223   golgi autoantigen, golgin subfamily a, 6B 
LOC653061             0.205   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653720             0.202   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653061             0.200   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728080             0.198   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728047             0.198   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC645202             0.196   PREDICTED: hypothetical protein LOC645202 
LOC727909             0.195   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC643699             0.194   PREDICTED: similar to golgi autoantigen, golgin sub...
LOC728498             0.194   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653125             0.193   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC390561             0.193   PREDICTED: similar to hect domain and RLD 2 
LOC653073             0.190   PREDICTED: Golgin subfamily A member 8-like protein...
LOC283685             0.186   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC440243             0.186   PREDICTED: Putative golgin subfamily A member 6-lik...
LOC727832             0.182   golgi autoantigen, golgin subfamily a-like 
LOC283767             0.182   golgi autoantigen, golgin subfamily a-like 
LOC653720             0.177   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653073             0.177   PREDICTED: Golgin subfamily A member 8-like protein...
LOC653125             0.172   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC283685             0.170   PREDICTED: golgi autoantigen, golgin subfamily a-li...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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