Guide to the Human Genome
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Name: LOC100132816 Sequence: fasta or formatted (655aa) NCBI GI: 239745127
Description:

PREDICTED: similar to Putative golgin subfamily A member 6-like protein 6

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.2         21           2
 C cysteine            0.6          4           1
 D aspartate           4.0         26           3
 E glutamate          21.4        140           4
 F phenylalanine       1.2          8           2
 G glycine             2.6         17           2
 H histidine           1.2          8           1
 I isoleucine          3.2         21           1
 K lysine             11.6         76           2
 L leucine             8.5         56           3
 M methionine          3.7         24           2
 N asparagine          2.4         16           1
 P proline             2.0         13           1
 Q glutamine          11.9         78           4
 R arginine            8.4         55           2
 S serine              4.9         32           2
 T threonine           2.3         15           1
 V valine              3.2         21           2
 W tryptophan          2.6         17           1
 Y tyrosine            1.1          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Putative golgin subfamily A m... 
LOC400352             0.998   PREDICTED: similar to Putative golgin subfamily A m...
LOC283767             0.395   golgi autoantigen, golgin subfamily a-like 
LOC645202             0.394   PREDICTED: hypothetical protein LOC645202 
LOC440243             0.394   PREDICTED: Putative golgin subfamily A member 6-lik...
LOC727832             0.383   golgi autoantigen, golgin subfamily a-like 
LOC283685             0.315   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC283685             0.311   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC100133758          0.230   PREDICTED: hypothetical protein, partial 
LOC100133220          0.161   PREDICTED: hypothetical protein 
LOC651807             0.154   PREDICTED: hypothetical protein 
LOC647042             0.124   PREDICTED: hypothetical protein isoform 1 
TCHH                  0.121   trichohyalin 
MPHOSPH10             0.119   M-phase phosphoprotein 10 
GOLGA6D               0.102   golgi autoantigen, golgin subfamily a, 6D 
GOLGA6C               0.102   PREDICTED: golgi autoantigen, golgin subfamily a, 6C...
GOLGA6B               0.101   golgi autoantigen, golgin subfamily a, 6B 
GOLGA6                0.099   golgi autoantigen, golgin subfamily a, 6 
WDR87                 0.096   NYD-SP11 protein 
GOLGA2                0.095   Golgi autoantigen, golgin subfamily a, 2 
LOC728636             0.090   PREDICTED: similar to golgi autoantigen, golgin sub...
LOC440295             0.090   hypothetical protein LOC440295 
LOC643802             0.090   PREDICTED: similar to M-phase phosphoprotein 10 (U3...
LOC643802             0.090   PREDICTED: similar to M-phase phosphoprotein 10 (U3...
LOC643802             0.090   PREDICTED: similar to M-phase phosphoprotein 10 (U3...
GIGYF2                0.085   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.085   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.085   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.085   GRB10 interacting GYF protein 2 isoform b 
LOC647042             0.085   PREDICTED: hypothetical protein isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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