Guide to the Human Genome
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Name: LOC647042 Sequence: fasta or formatted (432aa) NCBI GI: 239745259
Description:

PREDICTED: hypothetical protein isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {479aa} PREDICTED: hypothetical protein isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         35           4
 C cysteine            1.2          5           1
 D aspartate           1.6          7           1
 E glutamate          17.8         77           2
 F phenylalanine       0.7          3           1
 G glycine             6.7         29           2
 H histidine           1.9          8           1
 I isoleucine          2.1          9           2
 K lysine              5.3         23           3
 L leucine            12.3         53           2
 M methionine          1.2          5           1
 N asparagine          3.2         14           2
 P proline             5.3         23           2
 Q glutamine           8.8         38           2
 R arginine            8.6         37           2
 S serine              6.2         27           3
 T threonine           3.5         15           2
 V valine              3.0         13           1
 W tryptophan          1.4          6           1
 Y tyrosine            1.2          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein isoform 2 
LOC728636             0.983   PREDICTED: similar to golgi autoantigen, golgin sub...
LOC440295             0.983   hypothetical protein LOC440295 
LOC647042             0.969   PREDICTED: hypothetical protein isoform 1 
LOC100133220          0.876   PREDICTED: hypothetical protein 
LOC653061             0.229   PREDICTED: similar to Golgin subfamily A member 8-l...
GOLGA6D               0.218   golgi autoantigen, golgin subfamily a, 6D 
GOLGA6C               0.218   PREDICTED: golgi autoantigen, golgin subfamily a, 6C...
GOLGA6                0.218   golgi autoantigen, golgin subfamily a, 6 
GOLGA6B               0.215   golgi autoantigen, golgin subfamily a, 6B 
LOC728080             0.200   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728047             0.200   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653061             0.199   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653720             0.199   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC727909             0.196   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC643699             0.195   PREDICTED: similar to golgi autoantigen, golgin sub...
LOC390561             0.194   PREDICTED: similar to hect domain and RLD 2 
LOC653061             0.194   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC645202             0.191   PREDICTED: hypothetical protein LOC645202 
LOC728498             0.190   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653125             0.189   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653073             0.188   PREDICTED: Golgin subfamily A member 8-like protein...
LOC283685             0.184   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC440243             0.178   PREDICTED: Putative golgin subfamily A member 6-lik...
LOC653720             0.173   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC283767             0.173   golgi autoantigen, golgin subfamily a-like 
LOC653073             0.173   PREDICTED: Golgin subfamily A member 8-like protein...
LOC727832             0.171   golgi autoantigen, golgin subfamily a-like 
LOC283685             0.171   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC728080             0.170   PREDICTED: similar to Golgin subfamily A member 8-l...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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