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Search of human proteins with 44662807
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|44662807 hypothetical protein LOC388407 [Homo sapiens]
(251 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|44662807 hypothetical protein LOC388407 [Homo sapiens] 521 e-148
gi|148747864 JAW1-related protein isoform a [Homo sapiens] 52 6e-07
gi|154091332 JAW1-related protein isoform b [Homo sapiens] 52 6e-07
gi|148728182 JAW1-related protein isoform b [Homo sapiens] 52 6e-07
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 49 4e-06
gi|110832843 TBP-associated factor 4 [Homo sapiens] 49 5e-06
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 48 7e-06
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 47 1e-05
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 47 1e-05
gi|48762934 alpha 2 type I collagen [Homo sapiens] 45 5e-05
gi|169160624 PREDICTED: hypothetical protein [Homo sapiens] 45 6e-05
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 45 8e-05
gi|117938759 GNAS complex locus XLas [Homo sapiens] 45 8e-05
gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo ... 44 1e-04
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 44 2e-04
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 44 2e-04
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 44 2e-04
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 43 2e-04
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 43 3e-04
gi|22027589 alpha 1 type XIII collagen isoform 9 [Homo sapiens] 42 4e-04
gi|4885363 goosecoid homeobox 2 [Homo sapiens] 42 4e-04
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 42 5e-04
gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens] 42 5e-04
gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens] 42 5e-04
gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens] 42 7e-04
gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens] 42 7e-04
gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens] 42 7e-04
gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens] 42 7e-04
gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens] 42 7e-04
gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens] 42 7e-04
>gi|44662807 hypothetical protein LOC388407 [Homo sapiens]
Length = 251
Score = 521 bits (1341), Expect = e-148
Identities = 251/251 (100%), Positives = 251/251 (100%)
Query: 1 MGRPLEGQPLRALDLYPEPAFLRSGKDPKSSPASSPSFAVLGPEVRSTGGQAGSRRRPSA 60
MGRPLEGQPLRALDLYPEPAFLRSGKDPKSSPASSPSFAVLGPEVRSTGGQAGSRRRPSA
Sbjct: 1 MGRPLEGQPLRALDLYPEPAFLRSGKDPKSSPASSPSFAVLGPEVRSTGGQAGSRRRPSA 60
Query: 61 PCSQDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCRALNVSEHARGGFALGLPFGL 120
PCSQDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCRALNVSEHARGGFALGLPFGL
Sbjct: 61 PCSQDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCRALNVSEHARGGFALGLPFGL 120
Query: 121 SGGAYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSWQLPQLPAGSTSGSEPRARPGL 180
SGGAYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSWQLPQLPAGSTSGSEPRARPGL
Sbjct: 121 SGGAYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSWQLPQLPAGSTSGSEPRARPGL 180
Query: 181 GPRQLPTGPRDGAAGQGPGRGLTARLGREREIDCGPRQAGHGGTATDTGRAGSGARHRPP 240
GPRQLPTGPRDGAAGQGPGRGLTARLGREREIDCGPRQAGHGGTATDTGRAGSGARHRPP
Sbjct: 181 GPRQLPTGPRDGAAGQGPGRGLTARLGREREIDCGPRQAGHGGTATDTGRAGSGARHRPP 240
Query: 241 RDRGTPGLRTH 251
RDRGTPGLRTH
Sbjct: 241 RDRGTPGLRTH 251
>gi|148747864 JAW1-related protein isoform a [Homo sapiens]
Length = 903
Score = 51.6 bits (122), Expect = 6e-07
Identities = 63/246 (25%), Positives = 85/246 (34%), Gaps = 41/246 (16%)
Query: 10 LRALDLYPEPAFLRSGKDPKSSPASSPSFAV--LGPEVRSTGGQAGSRRRPSAP----CS 63
L L E R G+ +SSP SPS L P T ++ S P+ P CS
Sbjct: 155 LEEAKLVSERFLTRRGRKSRSSPGDSPSAVSPNLSPSASPTSSRSNSLTVPTPPGLDVCS 214
Query: 64 QDRAAAEGAPALLG-----GSPSSGSPGHPPGSAFGVEAGCRALNVSEHARGGFALGLPF 118
+ GAP G SP G P P G A R N G P
Sbjct: 215 GPPSPLPGAPPQKGDEADVSSPHPGEPNVPKGLAD------RKQNDQRKVSQGRLAPRPP 268
Query: 119 GLSGGAYLFLLLDGAGDPKPTPE------APISSADGRAWFPS---------------ES 157
+ + + DP PE AP++++ G+ S ++
Sbjct: 269 PVEKSKEIAIEQKENFDPLQYPETTPKGLAPVTNSSGKMALNSPQPGPVESELGKQLLKT 328
Query: 158 SWQ---LPQLPAGSTSGSEPRARPGLGPRQLPTGPRDGAAGQGPGRGLTARLGREREIDC 214
W+ LP+ P +G P A G GP P GP G+ + P L R D
Sbjct: 329 GWEGSPLPRSPTQDAAGVGPPASQGRGPAGEPMGPEAGSKAELPPTVSRPPLLRGLSWDS 388
Query: 215 GPRQAG 220
GP + G
Sbjct: 389 GPEEPG 394
>gi|154091332 JAW1-related protein isoform b [Homo sapiens]
Length = 821
Score = 51.6 bits (122), Expect = 6e-07
Identities = 63/246 (25%), Positives = 85/246 (34%), Gaps = 41/246 (16%)
Query: 10 LRALDLYPEPAFLRSGKDPKSSPASSPSFAV--LGPEVRSTGGQAGSRRRPSAP----CS 63
L L E R G+ +SSP SPS L P T ++ S P+ P CS
Sbjct: 73 LEEAKLVSERFLTRRGRKSRSSPGDSPSAVSPNLSPSASPTSSRSNSLTVPTPPGLDVCS 132
Query: 64 QDRAAAEGAPALLG-----GSPSSGSPGHPPGSAFGVEAGCRALNVSEHARGGFALGLPF 118
+ GAP G SP G P P G A R N G P
Sbjct: 133 GPPSPLPGAPPQKGDEADVSSPHPGEPNVPKGLAD------RKQNDQRKVSQGRLAPRPP 186
Query: 119 GLSGGAYLFLLLDGAGDPKPTPE------APISSADGRAWFPS---------------ES 157
+ + + DP PE AP++++ G+ S ++
Sbjct: 187 PVEKSKEIAIEQKENFDPLQYPETTPKGLAPVTNSSGKMALNSPQPGPVESELGKQLLKT 246
Query: 158 SWQ---LPQLPAGSTSGSEPRARPGLGPRQLPTGPRDGAAGQGPGRGLTARLGREREIDC 214
W+ LP+ P +G P A G GP P GP G+ + P L R D
Sbjct: 247 GWEGSPLPRSPTQDAAGVGPPASQGRGPAGEPMGPEAGSKAELPPTVSRPPLLRGLSWDS 306
Query: 215 GPRQAG 220
GP + G
Sbjct: 307 GPEEPG 312
>gi|148728182 JAW1-related protein isoform b [Homo sapiens]
Length = 821
Score = 51.6 bits (122), Expect = 6e-07
Identities = 63/246 (25%), Positives = 85/246 (34%), Gaps = 41/246 (16%)
Query: 10 LRALDLYPEPAFLRSGKDPKSSPASSPSFAV--LGPEVRSTGGQAGSRRRPSAP----CS 63
L L E R G+ +SSP SPS L P T ++ S P+ P CS
Sbjct: 73 LEEAKLVSERFLTRRGRKSRSSPGDSPSAVSPNLSPSASPTSSRSNSLTVPTPPGLDVCS 132
Query: 64 QDRAAAEGAPALLG-----GSPSSGSPGHPPGSAFGVEAGCRALNVSEHARGGFALGLPF 118
+ GAP G SP G P P G A R N G P
Sbjct: 133 GPPSPLPGAPPQKGDEADVSSPHPGEPNVPKGLAD------RKQNDQRKVSQGRLAPRPP 186
Query: 119 GLSGGAYLFLLLDGAGDPKPTPE------APISSADGRAWFPS---------------ES 157
+ + + DP PE AP++++ G+ S ++
Sbjct: 187 PVEKSKEIAIEQKENFDPLQYPETTPKGLAPVTNSSGKMALNSPQPGPVESELGKQLLKT 246
Query: 158 SWQ---LPQLPAGSTSGSEPRARPGLGPRQLPTGPRDGAAGQGPGRGLTARLGREREIDC 214
W+ LP+ P +G P A G GP P GP G+ + P L R D
Sbjct: 247 GWEGSPLPRSPTQDAAGVGPPASQGRGPAGEPMGPEAGSKAELPPTVSRPPLLRGLSWDS 306
Query: 215 GPRQAG 220
GP + G
Sbjct: 307 GPEEPG 312
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 48.9 bits (115), Expect = 4e-06
Identities = 65/228 (28%), Positives = 76/228 (33%), Gaps = 36/228 (15%)
Query: 48 TGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGH--PPGSAFGVEAGCRALNVS 105
TGG G +P P + A A GAP GG +G+PG PPG A G R
Sbjct: 646 TGGPPGENGKPGEPGPKGDAGAPGAP---GGKGDAGAPGERGPPGLAGA--PGLRGGAGP 700
Query: 106 EHARGGFALGLPFGLSGGAYLFLL------LDGAGDPKPTPEAPISSADGRAWFPSESSW 159
GG P G G A L G G P P + G P +
Sbjct: 701 PGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDG- 759
Query: 160 QLPQLPAGSTSGSEPRARPG-------------LGPRQLP-----TGPRDGAAGQGPGRG 201
P+ P G P +PG GPR P TGP G AG G
Sbjct: 760 --PRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGP-PGPAGFPGAPG 816
Query: 202 LTARLGREREIDCGPRQAGHGGTATDTGRAGSGARHRPPRDRGTPGLR 249
G + E P + G GG G G PP +G G R
Sbjct: 817 QNGEPGGKGERG-APGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGER 863
Score = 42.7 bits (99), Expect = 3e-04
Identities = 60/221 (27%), Positives = 71/221 (32%), Gaps = 37/221 (16%)
Query: 50 GQAGSRRRPSAPCSQDRAAAEGAPALLG--GSPSSGSPGHPPGSAFGVEAGCRALNVSEH 107
G AG P P + + G+P G G P P PPG + A E
Sbjct: 174 GPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGES 233
Query: 108 ARGGF----ALGLPFGLSGGAYL--------FLLLDGAGDPKPTPEAPISSADGRAWFPS 155
R G L P G+ G A + DG K AP G P
Sbjct: 234 GRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAP--GLKGENGLPG 291
Query: 156 ESSWQLPQLPAGSTSGSEPRARPGLGPRQLPTGPRDGAAGQG-----PGRGLTARLGRER 210
E+ P P G+ R RPGL P DGA G PG TA
Sbjct: 292 ENGAPGPMGPRGAPG---ERGRPGL-PGAAGARGNDGARGSDGQPGPPGPPGTAGF---- 343
Query: 211 EIDCGPRQAGHGGTATDTGRAGSGARHRPPRDRGTPGLRTH 251
G G + G AGS + P RG PG + H
Sbjct: 344 --------PGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGH 376
Score = 42.7 bits (99), Expect = 3e-04
Identities = 61/226 (26%), Positives = 77/226 (34%), Gaps = 37/226 (16%)
Query: 50 GQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCRALNVSEHAR 109
G+ G++ P + A G P G GSPG P + AG R
Sbjct: 435 GKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPA 494
Query: 110 GGFALGLPFGLSGGAYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSWQ-LPQLPAGS 168
G G+P G G A G P P + GR P + +P P G
Sbjct: 495 G--PNGIP-GEKGPA------GERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGP 545
Query: 169 TSGSEP--------RARPG----LGPRQLP-----TGPR--DGAAGQGPGRGLTARLGRE 209
S +P RPG GPR P GP+ DGA G+ RG G +
Sbjct: 546 GSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQ 605
Query: 210 ----REIDCGPR----QAGHGGTATDTGRAGSGARHRPPRDRGTPG 247
+ + GP+ G GG DTG G P G PG
Sbjct: 606 GPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPG 651
Score = 42.7 bits (99), Expect = 3e-04
Identities = 67/236 (28%), Positives = 75/236 (31%), Gaps = 37/236 (15%)
Query: 43 PEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCRAL 102
P + G G R P + G P GG ++G PG PPG+ AG L
Sbjct: 671 PGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPG-PPGA-----AGTPGL 724
Query: 103 NVSEHARGGFALGLPFGLSG-----GAYLFLLLDG-------AGDPKPTPE--------A 142
RGG P G G GA DG G P P + A
Sbjct: 725 QGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGA 784
Query: 143 P-ISSADGRAWFPSESSWQLPQLPAGSTSGSEPRARP-GLGPRQLP----TGPRDGAAGQ 196
P + G P E P PAG P G G R P G G AG
Sbjct: 785 PGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGP 844
Query: 197 GPGRGLTARLG-----REREIDCGPRQAGHGGTATDTGRAGSGARHRPPRDRGTPG 247
G G G ER GP AG G G GS PP G+PG
Sbjct: 845 PGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPG 900
Score = 42.0 bits (97), Expect = 5e-04
Identities = 69/254 (27%), Positives = 80/254 (31%), Gaps = 33/254 (12%)
Query: 25 GKDPKSSPASSPSFAVL--GPEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSS 82
G D + P P A P + G AGS AP + +G G
Sbjct: 327 GSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPP 386
Query: 83 GSPGHPPGSAFGVEAGCRALNVSEHARG----GFALGLPFGLSGGAYLFLLLDGAGDPKP 138
G G P G AG ARG A G P GL GGA G+P P
Sbjct: 387 GINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAP-GLRGGAGEPGKNGAKGEPGP 445
Query: 139 T--------PEAP-ISSADGRAWFPSESSWQLPQLPAGSTSGSEPRARPGLGPRQLP--T 187
P P DG+ P E LP + P R GP +P
Sbjct: 446 RGERGEAGIPGVPGAKGEDGKDGSPGEPGAN--GLPGAAGERGAPGFRGPAGPNGIPGEK 503
Query: 188 GPRD--GAAGQGPGRGLTARLGRE--------REIDCGPRQAGHGGTATDTGRAGSGARH 237
GP GA G RG GR+ R + P G G G G R
Sbjct: 504 GPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRP 563
Query: 238 RPPRD---RGTPGL 248
PP RG PG+
Sbjct: 564 GPPGPSGPRGQPGV 577
Score = 41.2 bits (95), Expect = 9e-04
Identities = 62/219 (28%), Positives = 74/219 (33%), Gaps = 21/219 (9%)
Query: 43 PEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPG--HPPGSAFGVEAGCR 100
P R G GS P P +G P G + + GSPG P G +AG
Sbjct: 875 PGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKG-----DAGQP 929
Query: 101 ALNVSEHARGGFALGLPFGLSG--GAYLFLLLDG----AGDPKPTPEAPISSADGRAWFP 154
S A+G P G++G GA G G P P S G
Sbjct: 930 GEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLS 989
Query: 155 SESSWQLPQ-LPAGSTSGSEPRARPGLGPRQLPTGPRDGAAGQGPGRGLTARLGRE---- 209
E PQ LP + + EP G LP RDG+ G RG G
Sbjct: 990 GERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLP--GRDGSPGGKGDRGENGSPGAPGAPG 1047
Query: 210 REIDCGP-RQAGHGGTATDTGRAGSGARHRPPRDRGTPG 247
GP AG G ++G AG P RG PG
Sbjct: 1048 HPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPG 1086
Score = 38.1 bits (87), Expect = 0.007
Identities = 59/227 (25%), Positives = 74/227 (32%), Gaps = 44/227 (19%)
Query: 50 GQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCRALNVSEHAR 109
G G + P P R G P G S G PG G + + S +
Sbjct: 103 GPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYD-SYDVK 161
Query: 110 GGFALGLPFGLSGGAYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSWQLPQLPAGST 169
G A+G GL+G G P P P +S G P +Q P G
Sbjct: 162 SGVAVG---GLAG-------YPGPAGPPGPPGPPGTS--GHPGSPGSPGYQGPPGEPGQA 209
Query: 170 SGSEPRARPG-LGPRQLPTGPRDGAAG----------------QGPG-----------RG 201
S P PG +GP P G +DG +G +GP RG
Sbjct: 210 GPSGPPGPPGAIGPSG-PAG-KDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRG 267
Query: 202 LTARLGREREIDCGPRQAGHGGTATDTGRAGSGARHRPPRDRGTPGL 248
R G + E P G G + G G P +RG PGL
Sbjct: 268 FDGRNGEKGETG-APGLKGENGLPGENGAPGPMGPRGAPGERGRPGL 313
Score = 37.7 bits (86), Expect = 0.010
Identities = 67/249 (26%), Positives = 84/249 (33%), Gaps = 54/249 (21%)
Query: 46 RSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGH-----------PPGSAFG 94
R G GS +P P A G+P G +GSPG P G A G
Sbjct: 320 RGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHA-G 378
Query: 95 VEA--GCRALNVSEHARGGF-------ALGL-----PFGLSGGAYLFLLLDGAGDP---- 136
+ G +N S +G A GL P G +G L GAG+P
Sbjct: 379 AQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNG 438
Query: 137 ---KPTPEAPISSA-----------DGRAWFPSESSWQLPQLPAGSTSGSEPRARPGLGP 182
+P P A DG+ P E LP + P R GP
Sbjct: 439 AKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPG--ANGLPGAAGERGAPGFRGPAGP 496
Query: 183 RQLP--TGP--RDGAAGQGPGRGLTARLGREREIDCGPRQAGHGGTATDTGRAGSGARHR 238
+P GP GA G RG GR+ + GP G G+ G GS +
Sbjct: 497 NGIPGEKGPAGERGAPGPAGPRGAAGEPGRD-GVPGGPGMRGMPGS---PGGPGSDGKPG 552
Query: 239 PPRDRGTPG 247
PP +G G
Sbjct: 553 PPGSQGESG 561
Score = 36.6 bits (83), Expect = 0.021
Identities = 61/232 (26%), Positives = 76/232 (32%), Gaps = 32/232 (13%)
Query: 28 PKSSPASSPSFAVLGPE----VRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSG 83
P+ SP GP G+ G + AP + EG P + G P
Sbjct: 793 PRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEK----GEGGPPGVAGPPGGS 848
Query: 84 SPGHPPGSAFGV--EAGCRALNVSEHARGGFALGLPFGLSGGAYLFLLLDGAGDPKPTPE 141
P PPG GV E G + G L P G +G G P P+
Sbjct: 849 GPAGPPGPQ-GVKGERGSPGGPGAAGFPGARGLPGPPGSNGNP---------GPPGPSGS 898
Query: 142 APISSADGRAWFPSESSWQLPQLPAGSTSGSEPRARPGL-GPRQLPTGPRDGAAGQGPGR 200
G A P G + PG GP P GP G AG R
Sbjct: 899 PGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAP-GPL-GIAGITGAR 956
Query: 201 GLTARLGREREIDCGPRQA-GHGGTATDTGRAGSGA---RHRPPRDRGTPGL 248
GL G GPR + G G ++G+ G+ PP +G PGL
Sbjct: 957 GLAGPPGMP-----GPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGL 1003
Score = 36.2 bits (82), Expect = 0.028
Identities = 62/230 (26%), Positives = 76/230 (33%), Gaps = 42/230 (18%)
Query: 26 KDPKSSPASSPSFAVLGPEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSP 85
K P + + +GP G G R RP P A GA G S G P
Sbjct: 284 KGENGLPGENGAPGPMGPR-----GAPGERGRPGLP------GAAGARGNDGARGSDGQP 332
Query: 86 GHPPGSAFGVEAGCRALNVSEHARGGFALGLPFGLSGGAYLFLLLDGA----GDPKPTPE 141
G PPG G S A+G P G G +GA G+P P
Sbjct: 333 G-PPG-----PPGTAGFPGSPGAKGEVG---PAGSPGS-------NGAPGQRGEPGPQGH 376
Query: 142 APISSADGRAWFPSESSWQLPQLPAGSTSGSEPRARPGLGPRQLPTGP--RDGAAGQGPG 199
A G + PAG PGL + P GP +GA G G
Sbjct: 377 AGAQGPPGPPGINGSPGGKGEMGPAGIPGA------PGLMGARGPPGPAGANGAPGLRGG 430
Query: 200 RGLTARLGREREIDCGPR-QAGHGGTATDTGRAGSGARHRPPRDRGTPGL 248
G + G + E GPR + G G G G + P + G GL
Sbjct: 431 AGEPGKNGAKGE--PGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGL 478
Score = 27.7 bits (60), Expect = 9.9
Identities = 21/71 (29%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
Query: 43 PEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCRAL 102
P T G G P ++ +EG+P G G PG P GV A A
Sbjct: 1148 PGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGVGAAAIA- 1206
Query: 103 NVSEHARGGFA 113
+ GGFA
Sbjct: 1207 GIGGEKAGGFA 1217
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 48.5 bits (114), Expect = 5e-06
Identities = 48/181 (26%), Positives = 67/181 (37%), Gaps = 19/181 (10%)
Query: 17 PEPAFL-RSGKDPKSSPASSPSFAVLGPEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPAL 75
P PA L R P P ++P AV P GG AG+ P A A G PA
Sbjct: 275 PAPATLARPPGHPAGPPTAAP--AVPPPAAAQNGGSAGAAPAP--------APAAGGPAG 324
Query: 76 LGGSPSSGSPGHPPGSAFGVEAGCRALNVSEHARGGFALGLPFGLSGGAYLFLLLDG--- 132
+ G P G+ P E+ R + + A A P + + + G
Sbjct: 325 VSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPASTAASMVIGPTMQGALP 384
Query: 133 --AGDPKPTPEAPISSADGRAWFPSESSWQLPQLPAGSTSGSEPRARPGLGPRQLPTGPR 190
A P P P P G A ++S L + P +TSG P + +LP P+
Sbjct: 385 SPAAVPPPAPGTPTGLPKGAAGAVTQS---LSRTPTATTSGIRATLTPTVLAPRLPQPPQ 441
Query: 191 D 191
+
Sbjct: 442 N 442
Score = 34.7 bits (78), Expect = 0.081
Identities = 66/264 (25%), Positives = 83/264 (31%), Gaps = 48/264 (18%)
Query: 3 RPLEGQPLRALDLYPEPAFLRSGKDP---KSSPASSPSFAVLGPEVRSTGGQAGSRRRPS 59
RP G P R P + +G P K P S P + AG P+
Sbjct: 96 RPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPA 155
Query: 60 APCSQDRAAAEGAPALLGGSPSSG-SPGHPPGSAFGVEA-----GCRALNVSEHARG--- 110
P AA A A G P G PG PG G A G AL S HA
Sbjct: 156 GPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAV 215
Query: 111 -------GFALGLPFGLSGGAYLFL--LLDGAGDPKPT----PEAPISSADGRA------ 151
L LP + G + + A P P P AP +A A
Sbjct: 216 SLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPP 275
Query: 152 ---------WFPSESSWQLPQLPA------GSTSGSEPRARPGLG-PRQLPTGPRDGAAG 195
P+ P +P G ++G+ P P G P + P GAA
Sbjct: 276 APATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAA 335
Query: 196 QGPGRGLTARLGREREIDCGPRQA 219
P G+ A +R + P A
Sbjct: 336 AAPAPGVKAE-SPKRVVQAAPPAA 358
Score = 28.1 bits (61), Expect = 7.6
Identities = 45/169 (26%), Positives = 56/169 (33%), Gaps = 20/169 (11%)
Query: 28 PKSSPASSPSFAVLGPEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGH 87
P++ + + LG V S + P+AP AA P P G P
Sbjct: 45 PRTPEVRAAAAGALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQR 104
Query: 88 PPGSAFGVEAGCRALNVSEHARGGFALGLPFGLSGG--AYLFLLLDGAGDPKPTPEAPIS 145
P G + R L + A L P S G A + A P+P P P
Sbjct: 105 P-----GPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAK 159
Query: 146 SADGRAWFPSESSWQLPQLPAGSTSGSEPRARPGLGPRQLPTGPRDGAA 194
A A AG G P PG GP + P GP GAA
Sbjct: 160 PAGPAAL----------AARAGPGPGPGPGPGPGPGPGK-PAGP--GAA 195
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 48.1 bits (113), Expect = 7e-06
Identities = 57/205 (27%), Positives = 66/205 (32%), Gaps = 42/205 (20%)
Query: 50 GQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGH-----PPGSAFGVEAGCRALNV 104
G G +P P S R AEG P +G G PGH PPG L
Sbjct: 1255 GPKGDCGKPGPPGSTGRPGAEGEPGAMGPQGRPGPPGHVGPPGPPGQPGPAGISAVGLKG 1314
Query: 105 SEHARGGFAL-GLPFGLSGGAYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSWQLPQ 163
A G L GLP G G G P P E A G+ P + + P
Sbjct: 1315 DRGATGERGLAGLP-GQPGPP---------GHPGPPGEPGTDGAAGKEGPPGKQGFYGPP 1364
Query: 164 LPAGSTSGSEPRARPGLGPRQLPTGPRDGAAGQGPGRGLTARLGREREIDCGPRQAGHGG 223
P G GAAGQ G R G + GP ++G G
Sbjct: 1365 GPKGDP----------------------GAAGQKGQAGEKGRAG----MPGGPGKSGSMG 1398
Query: 224 TATDTGRAGSGARHRPPRDRGTPGL 248
G AG P G+PGL
Sbjct: 1399 PVGPPGPAGERGHPGAPGPSGSPGL 1423
Score = 39.3 bits (90), Expect = 0.003
Identities = 52/200 (26%), Positives = 68/200 (34%), Gaps = 23/200 (11%)
Query: 50 GQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCRALNVSEHAR 109
G GS P P + EG P + GSP P PPG V +
Sbjct: 1015 GCVGSPGLPGPPGLPGQRGEEGPPG-MRGSPGPPGPIGPPGFPGAVGSP----------- 1062
Query: 110 GGFALGLPFGLSGGAYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSWQLPQLPAGST 169
GLP GL G L L G+P P + A G P + AG
Sbjct: 1063 -----GLP-GLQGERGLTGLTGDKGEPGPPGQPGYPGATGPPGLPGIKGERGYTGSAGEK 1116
Query: 170 SGSEPRARPGLGPRQLPTGPRDGAAGQGPGRGLTARLGREREIDCGPRQAGHGGTATDTG 229
P GL P GPR G+ +G + G ++ P G G G
Sbjct: 1117 GEPGPPGSEGLPGPPGPAGPR----GERGPQGNSGEKG-DQGFQGQPGFPGPPGPPGFPG 1171
Query: 230 RAGSGARHRPPRDRGTPGLR 249
+ GS P ++G+ G+R
Sbjct: 1172 KVGSPGPPGPQAEKGSEGIR 1191
Score = 38.1 bits (87), Expect = 0.007
Identities = 61/225 (27%), Positives = 73/225 (32%), Gaps = 41/225 (18%)
Query: 42 GPEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPG--------HPPGSAF 93
GP R G G P P Q G P G + GSPG PPG++
Sbjct: 783 GPPGRGVQGPQGEPGAPGLPGIQGLPGPRGPPGPTGEKGAQGSPGVKGATGPVGPPGASV 842
Query: 94 GVEAGCRALNVSEHARGGFALGLPFGLSGGAYLFLLLDGAGDPKPTPEAPISSADGRAWF 153
G RG P G G G + S G
Sbjct: 843 SGPPGRDGQQGQTGLRGTPGEKGPRGEKGE-------PGECSCPSQGDLIFSGMPGAPGL 895
Query: 154 PSESSWQL-PQLPAGSTSGSEPRARPGLGPRQLPTGPRDGAAGQGPGRGLTARLGR---E 209
SSWQ PQ P G P PGL + +P +G GQ GLTA LG E
Sbjct: 896 WMGSSWQPGPQGPPGIPGPPGPPGVPGL--QGVP--GNNGLPGQ---PGLTAELGSLPIE 948
Query: 210 REI------DCGPRQAGHGGTATDTGRAGSGARHRPPRDRGTPGL 248
+ + DC Q H G + G G D+G PG+
Sbjct: 949 QHLLKSICGDCVQGQRAHPGYLVEKGEKG---------DQGIPGV 984
Score = 37.4 bits (85), Expect = 0.012
Identities = 61/241 (25%), Positives = 78/241 (32%), Gaps = 19/241 (7%)
Query: 17 PEPAFLRSGKDPKSSPASSPSFAVLG-PEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPAL 75
P PA R + P+ + G P G G + +P A +G+ +
Sbjct: 1131 PGPAGPRGERGPQGNSGEKGDQGFQGQPGFPGPPGPPGFPGKVGSPGPPGPQAEKGSEGI 1190
Query: 76 LGGSPSSGSPGHPPGSAFGVEAGCRALNVSE---HARGGFALGLPFGLSGGAYLFLLLDG 132
G S GSPG P AG L+ + RG P GL G
Sbjct: 1191 RGPSGLPGSPGPPGPPGIQGPAGLDGLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGH 1250
Query: 133 AGDPKP-----TPEAPISSADGRAWFPSESSWQLPQLPAGSTSGSEPRARPGL-GPRQLP 186
G P P P P S+ GR E PQ G P PG GP +
Sbjct: 1251 PGLPGPKGDCGKPGPPGST--GRPGAEGEPGAMGPQGRPGPPGHVGPPGPPGQPGPAGIS 1308
Query: 187 TGPRDGAAGQGPGRGLTARLGREREIDCGPRQAGHGGTATDTGRAGSGARHRPPRDRGTP 246
G G RGL G+ P GH G + G G+ + PP +G
Sbjct: 1309 AVGLKGDRGATGERGLAGLPGQ-------PGPPGHPGPPGEPGTDGAAGKEGPPGKQGFY 1361
Query: 247 G 247
G
Sbjct: 1362 G 1362
Score = 32.0 bits (71), Expect = 0.52
Identities = 76/289 (26%), Positives = 95/289 (32%), Gaps = 82/289 (28%)
Query: 25 GKDPKSSPASSPSFAVLGPEVRSTGGQAGSRRRPSAPCSQDRAAAEG---APALLGGSPS 81
G ++ PA SP P G G++ P PC +G AL G S
Sbjct: 602 GNFGEAGPAGSPG----PPGPVGPAGIKGAKGEPCEPCPALSNLQDGDVRVVALPGPSGE 657
Query: 82 SGSPGHPPGSAFGV-----EAGCRALNVSEHARGG-------FALGLPFGLSGGAYLFLL 129
G PG PPG FG+ +AG R L + G G P GLSG
Sbjct: 658 KGEPG-PPG--FGLPGKQGKAGERGLKGQKGDAGNPGDPGTPGTTGRP-GLSGEPG---- 709
Query: 130 LDGAGDPK----------PTPEAPISSADGRAWFPSESSWQLPQ---------------- 163
+ G PK P+ + ++ GR P Q P+
Sbjct: 710 VQGPAGPKGEKGDGCTACPSLQGTVTDMAGRPGQPGPKGEQGPEGVGRPGKPGQPGLPGV 769
Query: 164 --------------LPAGSTSG--SEPRARPGL-------GPRQLPTGPRDGAAGQG-PG 199
P G EP A PGL GPR P GP QG PG
Sbjct: 770 QGPPGLKGVQGEPGPPGRGVQGPQGEPGA-PGLPGIQGLPGPRG-PPGPTGEKGAQGSPG 827
Query: 200 -RGLTARLGREREIDCGPRQAGHGGTATDTGRAGSGARHRPPRDRGTPG 247
+G T +G GP G G TG G+ P ++G PG
Sbjct: 828 VKGATGPVGPPGASVSGP--PGRDGQQGQTGLRGTPGEKGPRGEKGEPG 874
Score = 28.9 bits (63), Expect = 4.4
Identities = 61/226 (26%), Positives = 74/226 (32%), Gaps = 64/226 (28%)
Query: 71 GAPALLGGSPSSGSPGHPPGSAFGVEAGCRALNVSEH--------------ARGGFAL-- 114
G P L G ++G PG P G+ A +L + +H A G+ +
Sbjct: 919 GVPGLQGVPGNNGLPGQP-----GLTAELGSLPIEQHLLKSICGDCVQGQRAHPGYLVEK 973
Query: 115 ---------GLPFGLSGGAYLFLLLDGAGDPKPTPEAPISSADGRAWFP----SESSWQL 161
G+P GL A FL L+ P A + D P S
Sbjct: 974 GEKGDQGIPGVP-GLDNCAQCFLSLE-------RPRAEEARGDNSEGDPGCVGSPGLPGP 1025
Query: 162 PQLPAGSTSGSEPRARPGLGPRQLPTGPRD--GAAGQG--PG----RGLTARLGREREID 213
P LP P R GP P GP GA G PG RGLT G + E
Sbjct: 1026 PGLPGQRGEEGPPGMRGSPGPPG-PIGPPGFPGAVGSPGLPGLQGERGLTGLTGDKGEPG 1084
Query: 214 CGPRQAGHGGTATD------------TGRAGSGARHRPPRDRGTPG 247
P Q G+ G TG AG PP G PG
Sbjct: 1085 -PPGQPGYPGATGPPGLPGIKGERGYTGSAGEKGEPGPPGSEGLPG 1129
Score = 28.1 bits (61), Expect = 7.6
Identities = 31/110 (28%), Positives = 38/110 (34%), Gaps = 14/110 (12%)
Query: 139 TPEAPISSADGRAWFPSESSWQLPQLPAGSTSGSEPRARPGLGPRQLPTGPRDGAAGQGP 198
+P+AP+ A+G ES P GST + G DG P
Sbjct: 365 SPDAPLQCAEGPKGEKGESGALGPSGLPGSTGEKGQKGEKG-----------DGGIKGVP 413
Query: 199 GRGLTARLGREREIDCGPRQAGHGGTATDTGRAGSGARHRPPRDRGTPGL 248
G+ R GR EI C G G G G PP G PG+
Sbjct: 414 GK--PGRDGRPGEI-CVIGPKGQKGDPGFVGPEGLAGEPGPPGLPGPPGI 460
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 47.4 bits (111), Expect = 1e-05
Identities = 62/240 (25%), Positives = 78/240 (32%), Gaps = 23/240 (9%)
Query: 18 EPAFLRSGKDPKSSPASSPSFAVLGPEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLG 77
EP ++ PK P GP G G + AP + R G P G
Sbjct: 108 EPGDIKDIVGPKGPPGPQGPAGEQGPR-----GDRGDKGEKGAPGPRGRDGEPGTPGNPG 162
Query: 78 GSPSSGSPGHPPGSAFGVEAGCRALNVSEHARGGFALGLPFGLSGGAYLFLLLDGAGDPK 137
G PG PPG G + + GG LG+ G G + G P
Sbjct: 163 PPGPPGPPG-PPG--LGGNFAAQMAGGFDEKAGGAQLGVMQGPMGP------MGPRGPPG 213
Query: 138 PTPEAPISSADGRAWFPSESSWQLPQLPAGSTS-----GSEPRA-RPGLGPRQLPTGPRD 191
P G P E P P G G + A +PG + P GP+
Sbjct: 214 PAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQ- 272
Query: 192 GAAGQGPGRGLTARLGRERE--IDCGPRQAGHGGTATDTGRAGSGARHRPPRDRGTPGLR 249
GA G GL G +D +AG G ++G G P RG PG R
Sbjct: 273 GARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGER 332
Score = 42.4 bits (98), Expect = 4e-04
Identities = 65/225 (28%), Positives = 79/225 (35%), Gaps = 24/225 (10%)
Query: 28 PKSSPASSPSFAVLGPEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPG- 86
P +S P V P + G+ G P A R A G G + + G+PG
Sbjct: 1010 PGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGA 1069
Query: 87 -HPPGSAFGVEAGCRALNVSEHARGGFALGLPFGLSG--GAYLFLLLDG-AGDPKPTPEA 142
PPGS G + RG P G SG GA G GD E
Sbjct: 1070 PGPPGS-----PGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEP 1124
Query: 143 PISSADGRAWFPSESSWQLPQLPAGSTSGSEPRARPGLGPRQLPTGPRDGAAGQGPGRGL 202
G F P P+G S P A P GPR P GP G +G+ G+
Sbjct: 1125 GERGLKGHRGFTGLQGLPGPPGPSGDQGASGP-AGPS-GPRG-PPGP-VGPSGKDGANGI 1180
Query: 203 TARLGREREIDCGPRQAGHGGTATDTGRAGSGARHRPPRDRGTPG 247
+G GPR G + +TG AG PP G PG
Sbjct: 1181 PGPIGPP-----GPR-----GRSGETGPAGPPGNPGPPGPPGPPG 1215
Score = 42.0 bits (97), Expect = 5e-04
Identities = 73/264 (27%), Positives = 84/264 (31%), Gaps = 37/264 (14%)
Query: 11 RALDLYPEPAFLRSGKDPKSSPASSPSF-------AVLGPE-VRSTGGQAGSRRRPSAPC 62
R D P PA G PA P F GP R G G R P P
Sbjct: 344 RGNDGQPGPA----GPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPG 399
Query: 63 SQDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCRALNVSEHARGGFALGLPFGLSG 122
S A A G P G + GS G P + G R + A G P G G
Sbjct: 400 SPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATG------PLGPKG 453
Query: 123 --GAYLFLLLDGAGDPK--PTPEAP-----ISSADGRAWFPSESSWQLPQLPAGSTSGSE 173
G G PK P P P + +G+ E P P G
Sbjct: 454 QTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPG 513
Query: 174 PRARPG----LGPRQLP--TGPRDGAAGQG----PGRGLTARLGREREIDCGPRQAGHGG 223
R PG GP+ P GP A +G PGR L R + P AG G
Sbjct: 514 NRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQG 573
Query: 224 TATDTGRAGSGARHRPPRDRGTPG 247
+G G R PP +G G
Sbjct: 574 KVGPSGAPGEDGRPGPPGPQGARG 597
Score = 40.0 bits (92), Expect = 0.002
Identities = 56/229 (24%), Positives = 72/229 (31%), Gaps = 26/229 (11%)
Query: 26 KDPKSSPASSPSFAVLGPE-VRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGS 84
K SP + S +GP + G+ G A + + G P +G + G
Sbjct: 308 KGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGF 367
Query: 85 PGHPPGSAFGVEAGCRALNVSEHARGGFALGL---PFGLSGGAYLFLLLDGAGDPKPTPE 141
PG P G R ++ RG P G SG DG K +
Sbjct: 368 PGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGT----DGIPGAKGSAG 423
Query: 142 AP-ISSADGRAWFPSESSWQLPQLPAGSTSGSEPRARPGLGPRQLPTGPRDGAAGQGPGR 200
AP I+ A G FP PQ G PG+ + GP+ GP
Sbjct: 424 APGIAGAPG---FPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGP-- 478
Query: 201 GLTARLGREREIDCGPRQAGHGGTATDTGRAGSGARHRPPRDRGTPGLR 249
P AG G G G PP +RG PG R
Sbjct: 479 ------------QGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNR 515
Score = 38.5 bits (88), Expect = 0.006
Identities = 63/232 (27%), Positives = 73/232 (31%), Gaps = 45/232 (19%)
Query: 25 GKDPKSSPASSPSFAVLGPEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGS 84
GKD ++ A P A GP G+ G + P Q G P G G
Sbjct: 633 GKDGETGAAGPPGPA--GP-----AGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGV 685
Query: 85 PGHPPGSAFGVEAGCRALNVSEHARGGFALGLPFGLSGGAYLFLLLDGAGDPKPTPEAPI 144
PG G R + G L P GL G G PK
Sbjct: 686 PGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPG-------TPGTDGPK------- 731
Query: 145 SSADGRAWFPSESSWQLPQLPAGSTSGSEPRARPGLGPRQLPTGPR--------DGAAGQ 196
A G A P Q P G R G+ P G R +GA G+
Sbjct: 732 -GASGPAGPPGA------QGPPGLQGMPGERGAAGIAG---PKGDRGDVGEKGPEGAPGK 781
Query: 197 GPGRGLTARLGREREIDCGPRQA-GHGGTATDTGRAGSGARHRPPRDRGTPG 247
GRGLT +G GP A G G G AGS P +RG G
Sbjct: 782 DGGRGLTGPIGPP-----GPAGANGEKGEVGPPGPAGSAGARGAPGERGETG 828
Score = 38.5 bits (88), Expect = 0.006
Identities = 54/186 (29%), Positives = 66/186 (35%), Gaps = 20/186 (10%)
Query: 70 EGAPALLGGSPSSGSPGHPPGSAFGVEAGCRALNVSEHARGGFALGLPFGLSGGAYLFLL 129
EGAP GG +G G PPG A G + A A G P G G
Sbjct: 776 EGAPGKDGGRGLTGPIG-PPGPA-GANGEKGEVGPPGPAGSAGARGAP-GERGET----- 827
Query: 130 LDGAGDPKPTPEAPISSADGRAWFPSESSWQLPQLPAGSTSGSEPRARPG-LGPRQLPTG 188
G P P A ADG+ E + AG+ P PG GP + TG
Sbjct: 828 ----GPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGV-TG 882
Query: 189 PRDGAAGQGPGR-----GLTARLGREREIDCGPRQAGHGGTATDTGRAGSGARHRPPRDR 243
P+ QGP G R+G + P G G + G G+ PP
Sbjct: 883 PKGARGAQGPPGATGFPGAAGRVGPPGS-NGNPGPPGPPGPSGKDGPKGARGDSGPPGRA 941
Query: 244 GTPGLR 249
G PGL+
Sbjct: 942 GEPGLQ 947
Score = 37.7 bits (86), Expect = 0.010
Identities = 57/202 (28%), Positives = 68/202 (33%), Gaps = 19/202 (9%)
Query: 50 GQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPG--HPPGSAFGVEAGCRALNVSEH 107
GQ G R P P +GAP G S G PG PPG AG S
Sbjct: 987 GQRGERGFPGLPGPSGEPGKQGAP---GASGDRGPPGPVGPPG--LTGPAGEPGREGSPG 1041
Query: 108 ARGGFALGLPFGLSGGAYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSWQLPQLPAG 167
A G G+ G + G P P + G+ E+ Q P P+G
Sbjct: 1042 ADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSG 1101
Query: 168 STSGSEPRARPGLGPRQLPTGPR--DGAAGQGPGRGLTARLGREREIDCGPRQAGHGGTA 225
P G+ Q P GPR G AG+ RGL G + P G G
Sbjct: 1102 ------PAGARGI---QGPQGPRGDKGEAGEPGERGLKGHRG-FTGLQGLPGPPGPSGDQ 1151
Query: 226 TDTGRAGSGARHRPPRDRGTPG 247
+G AG PP G G
Sbjct: 1152 GASGPAGPSGPRGPPGPVGPSG 1173
Score = 37.4 bits (85), Expect = 0.012
Identities = 61/212 (28%), Positives = 76/212 (35%), Gaps = 36/212 (16%)
Query: 42 GPEVR-STGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCR 100
GP+ + G G RP P Q G G ++G PG +AG +
Sbjct: 570 GPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPG---------KAGEK 620
Query: 101 ALNVSEHARGGFALGLPFGLSGGAYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSWQ 160
L + R GLP G G GA P P P P + G P S +Q
Sbjct: 621 GLPGAPGLR-----GLP-GKDGET-------GAAGP-PGPAGP-AGERGEQGAPGPSGFQ 665
Query: 161 -LPQLPAGSTSGSEP--RARPGLGPRQLPTGPRDGAAGQGPGRGLTARLGREREIDCGPR 217
LP P G +P + PG GPR G G RG G + GPR
Sbjct: 666 GLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPR-GERGFPGERGSPGAQGLQ-----GPR 719
Query: 218 QAGHGGTATDTGRAGSGARHRPPRDRGTPGLR 249
G GT G G+ PP +G PGL+
Sbjct: 720 --GLPGTPGTDGPKGASGPAGPPGAQGPPGLQ 749
Score = 37.4 bits (85), Expect = 0.012
Identities = 54/209 (25%), Positives = 73/209 (34%), Gaps = 29/209 (13%)
Query: 43 PEVRSTGGQAGSRRRPSAPCSQDRAAA---EGAPALLGGSPSSGSPGHPPGSAFGVEAGC 99
P + G+AG + AP Q + A +G + G + G+ G P + F AG
Sbjct: 845 PGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAG- 903
Query: 100 RALNVSEHARGGFALGLPFGLSGGAYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSW 159
R G P G +G G P P+ + A G + P +
Sbjct: 904 ---------RVG-----PPGSNGNP------GPPGPPGPSGKDGPKGARGDSGPPGRAGE 943
Query: 160 QLPQLPAGSTSGSEPRARPGLGPRQLPTGPRDGAAGQGPGRGLTARLGREREIDCGPRQA 219
Q PAG G + P GP+ G AGQ RG+ G+ E P
Sbjct: 944 PGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQ-GLAGQ---RGIVGLPGQRGERGF-PGLP 998
Query: 220 GHGGTATDTGRAGSGARHRPPRDRGTPGL 248
G G G G+ PP G PGL
Sbjct: 999 GPSGEPGKQGAPGASGDRGPPGPVGPPGL 1027
Score = 36.6 bits (83), Expect = 0.021
Identities = 67/241 (27%), Positives = 81/241 (33%), Gaps = 30/241 (12%)
Query: 28 PKSSPASSPSFAVLGPEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGH 87
PK +P + GP + G G P P ++ G G SG+PG
Sbjct: 526 PKGAPGERGPSGLAGP--KGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGE 583
Query: 88 -----PPG--SAFGVEAGCRALNVSEHARGGFALGLPFGLSGGAYLFLLLD-----GAGD 135
PPG A G + G + A G GL G L L GA
Sbjct: 584 DGRPGPPGPQGARG-QPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAG 642
Query: 136 PKPTPEAPISSADGRAWFPSESSWQ-LPQLPAGSTSGSEPRARPGLGPRQLP--TGPRDG 192
P P P P G P S +Q LP P G +P + G P GPR G
Sbjct: 643 P-PGPAGPAGER-GEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPR-G 699
Query: 193 AAGQGPGRGLTARLGREREIDCGPR----QAGHGGTATDTGRAGSGARHRPPRDRGTPGL 248
G RG G + GPR G G +G AG PP +G PG
Sbjct: 700 ERGFPGERGSPGAQGLQ-----GPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGE 754
Query: 249 R 249
R
Sbjct: 755 R 755
Score = 35.8 bits (81), Expect = 0.036
Identities = 51/205 (24%), Positives = 59/205 (28%), Gaps = 26/205 (12%)
Query: 46 RSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCRALNVS 105
R G G+R P P G P L G +G+PG E+G N S
Sbjct: 266 RGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPG------VKGESGSPGENGS 319
Query: 106 EHARGGFALGLPFGLSGGAYLFLLLDGAGDPKPT-PEAPISSADGRAW--FPSESSWQLP 162
G L G +G A G P P P P+ A G + P P
Sbjct: 320 PGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGP 379
Query: 163 QLPAGSTSGSEPRARPGLGPRQLPTGPRDGAAGQGPGRGLTARLGREREIDCGPRQAGHG 222
G PR PG P P A PG D P G
Sbjct: 380 TGARGPEGAQGPRGEPG-----TPGSPGPAGASGNPG------------TDGIPGAKGSA 422
Query: 223 GTATDTGRAGSGARHRPPRDRGTPG 247
G G G PP +G G
Sbjct: 423 GAPGIAGAPGFPGPRGPPGPQGATG 447
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 47.4 bits (111), Expect = 1e-05
Identities = 62/240 (25%), Positives = 78/240 (32%), Gaps = 23/240 (9%)
Query: 18 EPAFLRSGKDPKSSPASSPSFAVLGPEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLG 77
EP ++ PK P GP G G + AP + R G P G
Sbjct: 39 EPGDIKDIVGPKGPPGPQGPAGEQGPR-----GDRGDKGEKGAPGPRGRDGEPGTPGNPG 93
Query: 78 GSPSSGSPGHPPGSAFGVEAGCRALNVSEHARGGFALGLPFGLSGGAYLFLLLDGAGDPK 137
G PG PPG G + + GG LG+ G G + G P
Sbjct: 94 PPGPPGPPG-PPG--LGGNFAAQMAGGFDEKAGGAQLGVMQGPMGP------MGPRGPPG 144
Query: 138 PTPEAPISSADGRAWFPSESSWQLPQLPAGSTS-----GSEPRA-RPGLGPRQLPTGPRD 191
P G P E P P G G + A +PG + P GP+
Sbjct: 145 PAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQ- 203
Query: 192 GAAGQGPGRGLTARLGRERE--IDCGPRQAGHGGTATDTGRAGSGARHRPPRDRGTPGLR 249
GA G GL G +D +AG G ++G G P RG PG R
Sbjct: 204 GARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGER 263
Score = 42.4 bits (98), Expect = 4e-04
Identities = 65/225 (28%), Positives = 79/225 (35%), Gaps = 24/225 (10%)
Query: 28 PKSSPASSPSFAVLGPEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPG- 86
P +S P V P + G+ G P A R A G G + + G+PG
Sbjct: 941 PGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGA 1000
Query: 87 -HPPGSAFGVEAGCRALNVSEHARGGFALGLPFGLSG--GAYLFLLLDG-AGDPKPTPEA 142
PPGS G + RG P G SG GA G GD E
Sbjct: 1001 PGPPGS-----PGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEP 1055
Query: 143 PISSADGRAWFPSESSWQLPQLPAGSTSGSEPRARPGLGPRQLPTGPRDGAAGQGPGRGL 202
G F P P+G S P A P GPR P GP G +G+ G+
Sbjct: 1056 GERGLKGHRGFTGLQGLPGPPGPSGDQGASGP-AGPS-GPRG-PPGP-VGPSGKDGANGI 1111
Query: 203 TARLGREREIDCGPRQAGHGGTATDTGRAGSGARHRPPRDRGTPG 247
+G GPR G + +TG AG PP G PG
Sbjct: 1112 PGPIGPP-----GPR-----GRSGETGPAGPPGNPGPPGPPGPPG 1146
Score = 42.0 bits (97), Expect = 5e-04
Identities = 73/264 (27%), Positives = 84/264 (31%), Gaps = 37/264 (14%)
Query: 11 RALDLYPEPAFLRSGKDPKSSPASSPSF-------AVLGPE-VRSTGGQAGSRRRPSAPC 62
R D P PA G PA P F GP R G G R P P
Sbjct: 275 RGNDGQPGPA----GPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPG 330
Query: 63 SQDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCRALNVSEHARGGFALGLPFGLSG 122
S A A G P G + GS G P + G R + A G P G G
Sbjct: 331 SPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATG------PLGPKG 384
Query: 123 --GAYLFLLLDGAGDPK--PTPEAP-----ISSADGRAWFPSESSWQLPQLPAGSTSGSE 173
G G PK P P P + +G+ E P P G
Sbjct: 385 QTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPG 444
Query: 174 PRARPG----LGPRQLP--TGPRDGAAGQG----PGRGLTARLGREREIDCGPRQAGHGG 223
R PG GP+ P GP A +G PGR L R + P AG G
Sbjct: 445 NRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQG 504
Query: 224 TATDTGRAGSGARHRPPRDRGTPG 247
+G G R PP +G G
Sbjct: 505 KVGPSGAPGEDGRPGPPGPQGARG 528
Score = 40.0 bits (92), Expect = 0.002
Identities = 56/229 (24%), Positives = 72/229 (31%), Gaps = 26/229 (11%)
Query: 26 KDPKSSPASSPSFAVLGPE-VRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGS 84
K SP + S +GP + G+ G A + + G P +G + G
Sbjct: 239 KGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGF 298
Query: 85 PGHPPGSAFGVEAGCRALNVSEHARGGFALGL---PFGLSGGAYLFLLLDGAGDPKPTPE 141
PG P G R ++ RG P G SG DG K +
Sbjct: 299 PGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGT----DGIPGAKGSAG 354
Query: 142 AP-ISSADGRAWFPSESSWQLPQLPAGSTSGSEPRARPGLGPRQLPTGPRDGAAGQGPGR 200
AP I+ A G FP PQ G PG+ + GP+ GP
Sbjct: 355 APGIAGAPG---FPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGP-- 409
Query: 201 GLTARLGREREIDCGPRQAGHGGTATDTGRAGSGARHRPPRDRGTPGLR 249
P AG G G G PP +RG PG R
Sbjct: 410 ------------QGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNR 446
Score = 38.5 bits (88), Expect = 0.006
Identities = 63/232 (27%), Positives = 73/232 (31%), Gaps = 45/232 (19%)
Query: 25 GKDPKSSPASSPSFAVLGPEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGS 84
GKD ++ A P A GP G+ G + P Q G P G G
Sbjct: 564 GKDGETGAAGPPGPA--GP-----AGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGV 616
Query: 85 PGHPPGSAFGVEAGCRALNVSEHARGGFALGLPFGLSGGAYLFLLLDGAGDPKPTPEAPI 144
PG G R + G L P GL G G PK
Sbjct: 617 PGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPG-------TPGTDGPK------- 662
Query: 145 SSADGRAWFPSESSWQLPQLPAGSTSGSEPRARPGLGPRQLPTGPR--------DGAAGQ 196
A G A P Q P G R G+ P G R +GA G+
Sbjct: 663 -GASGPAGPPGA------QGPPGLQGMPGERGAAGIAG---PKGDRGDVGEKGPEGAPGK 712
Query: 197 GPGRGLTARLGREREIDCGPRQA-GHGGTATDTGRAGSGARHRPPRDRGTPG 247
GRGLT +G GP A G G G AGS P +RG G
Sbjct: 713 DGGRGLTGPIGPP-----GPAGANGEKGEVGPPGPAGSAGARGAPGERGETG 759
Score = 38.5 bits (88), Expect = 0.006
Identities = 54/186 (29%), Positives = 66/186 (35%), Gaps = 20/186 (10%)
Query: 70 EGAPALLGGSPSSGSPGHPPGSAFGVEAGCRALNVSEHARGGFALGLPFGLSGGAYLFLL 129
EGAP GG +G G PPG A G + A A G P G G
Sbjct: 707 EGAPGKDGGRGLTGPIG-PPGPA-GANGEKGEVGPPGPAGSAGARGAP-GERGET----- 758
Query: 130 LDGAGDPKPTPEAPISSADGRAWFPSESSWQLPQLPAGSTSGSEPRARPG-LGPRQLPTG 188
G P P A ADG+ E + AG+ P PG GP + TG
Sbjct: 759 ----GPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGV-TG 813
Query: 189 PRDGAAGQGPGR-----GLTARLGREREIDCGPRQAGHGGTATDTGRAGSGARHRPPRDR 243
P+ QGP G R+G + P G G + G G+ PP
Sbjct: 814 PKGARGAQGPPGATGFPGAAGRVGPPGS-NGNPGPPGPPGPSGKDGPKGARGDSGPPGRA 872
Query: 244 GTPGLR 249
G PGL+
Sbjct: 873 GEPGLQ 878
Score = 37.7 bits (86), Expect = 0.010
Identities = 57/202 (28%), Positives = 68/202 (33%), Gaps = 19/202 (9%)
Query: 50 GQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPG--HPPGSAFGVEAGCRALNVSEH 107
GQ G R P P +GAP G S G PG PPG AG S
Sbjct: 918 GQRGERGFPGLPGPSGEPGKQGAP---GASGDRGPPGPVGPPG--LTGPAGEPGREGSPG 972
Query: 108 ARGGFALGLPFGLSGGAYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSWQLPQLPAG 167
A G G+ G + G P P + G+ E+ Q P P+G
Sbjct: 973 ADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSG 1032
Query: 168 STSGSEPRARPGLGPRQLPTGPR--DGAAGQGPGRGLTARLGREREIDCGPRQAGHGGTA 225
P G+ Q P GPR G AG+ RGL G + P G G
Sbjct: 1033 ------PAGARGI---QGPQGPRGDKGEAGEPGERGLKGHRG-FTGLQGLPGPPGPSGDQ 1082
Query: 226 TDTGRAGSGARHRPPRDRGTPG 247
+G AG PP G G
Sbjct: 1083 GASGPAGPSGPRGPPGPVGPSG 1104
Score = 37.4 bits (85), Expect = 0.012
Identities = 61/212 (28%), Positives = 76/212 (35%), Gaps = 36/212 (16%)
Query: 42 GPEVR-STGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCR 100
GP+ + G G RP P Q G G ++G PG +AG +
Sbjct: 501 GPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPG---------KAGEK 551
Query: 101 ALNVSEHARGGFALGLPFGLSGGAYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSWQ 160
L + R GLP G G GA P P P P + G P S +Q
Sbjct: 552 GLPGAPGLR-----GLP-GKDGET-------GAAGP-PGPAGP-AGERGEQGAPGPSGFQ 596
Query: 161 -LPQLPAGSTSGSEP--RARPGLGPRQLPTGPRDGAAGQGPGRGLTARLGREREIDCGPR 217
LP P G +P + PG GPR G G RG G + GPR
Sbjct: 597 GLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPR-GERGFPGERGSPGAQGLQ-----GPR 650
Query: 218 QAGHGGTATDTGRAGSGARHRPPRDRGTPGLR 249
G GT G G+ PP +G PGL+
Sbjct: 651 --GLPGTPGTDGPKGASGPAGPPGAQGPPGLQ 680
Score = 37.4 bits (85), Expect = 0.012
Identities = 54/209 (25%), Positives = 73/209 (34%), Gaps = 29/209 (13%)
Query: 43 PEVRSTGGQAGSRRRPSAPCSQDRAAA---EGAPALLGGSPSSGSPGHPPGSAFGVEAGC 99
P + G+AG + AP Q + A +G + G + G+ G P + F AG
Sbjct: 776 PGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAG- 834
Query: 100 RALNVSEHARGGFALGLPFGLSGGAYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSW 159
R G P G +G G P P+ + A G + P +
Sbjct: 835 ---------RVG-----PPGSNGNP------GPPGPPGPSGKDGPKGARGDSGPPGRAGE 874
Query: 160 QLPQLPAGSTSGSEPRARPGLGPRQLPTGPRDGAAGQGPGRGLTARLGREREIDCGPRQA 219
Q PAG G + P GP+ G AGQ RG+ G+ E P
Sbjct: 875 PGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQ-GLAGQ---RGIVGLPGQRGERGF-PGLP 929
Query: 220 GHGGTATDTGRAGSGARHRPPRDRGTPGL 248
G G G G+ PP G PGL
Sbjct: 930 GPSGEPGKQGAPGASGDRGPPGPVGPPGL 958
Score = 36.6 bits (83), Expect = 0.021
Identities = 67/241 (27%), Positives = 81/241 (33%), Gaps = 30/241 (12%)
Query: 28 PKSSPASSPSFAVLGPEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGH 87
PK +P + GP + G G P P ++ G G SG+PG
Sbjct: 457 PKGAPGERGPSGLAGP--KGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGE 514
Query: 88 -----PPG--SAFGVEAGCRALNVSEHARGGFALGLPFGLSGGAYLFLLLD-----GAGD 135
PPG A G + G + A G GL G L L GA
Sbjct: 515 DGRPGPPGPQGARG-QPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAG 573
Query: 136 PKPTPEAPISSADGRAWFPSESSWQ-LPQLPAGSTSGSEPRARPGLGPRQLP--TGPRDG 192
P P P P G P S +Q LP P G +P + G P GPR G
Sbjct: 574 P-PGPAGPAGER-GEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPR-G 630
Query: 193 AAGQGPGRGLTARLGREREIDCGPR----QAGHGGTATDTGRAGSGARHRPPRDRGTPGL 248
G RG G + GPR G G +G AG PP +G PG
Sbjct: 631 ERGFPGERGSPGAQGLQ-----GPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGE 685
Query: 249 R 249
R
Sbjct: 686 R 686
Score = 35.8 bits (81), Expect = 0.036
Identities = 51/205 (24%), Positives = 59/205 (28%), Gaps = 26/205 (12%)
Query: 46 RSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCRALNVS 105
R G G+R P P G P L G +G+PG E+G N S
Sbjct: 197 RGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPG------VKGESGSPGENGS 250
Query: 106 EHARGGFALGLPFGLSGGAYLFLLLDGAGDPKPT-PEAPISSADGRAW--FPSESSWQLP 162
G L G +G A G P P P P+ A G + P P
Sbjct: 251 PGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGP 310
Query: 163 QLPAGSTSGSEPRARPGLGPRQLPTGPRDGAAGQGPGRGLTARLGREREIDCGPRQAGHG 222
G PR PG P P A PG D P G
Sbjct: 311 TGARGPEGAQGPRGEPG-----TPGSPGPAGASGNPG------------TDGIPGAKGSA 353
Query: 223 GTATDTGRAGSGARHRPPRDRGTPG 247
G G G PP +G G
Sbjct: 354 GAPGIAGAPGFPGPRGPPGPQGATG 378
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 45.4 bits (106), Expect = 5e-05
Identities = 66/257 (25%), Positives = 83/257 (32%), Gaps = 35/257 (13%)
Query: 17 PEPAFLRSGKDPKSSPASSPSFAVLGPE----VRSTGGQAGSRRRPSAPCSQDRAAAEGA 72
P PA + K P S+ GP R G+AGS P P + + G
Sbjct: 348 PGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGL 407
Query: 73 PALLGGSPSSGSPGHPPGSAFGVEAGCRALNVSEHARGGFALGLPFGLSG--------GA 124
P G + G PG S AG R N G L P GL G G
Sbjct: 408 PGADGRAGVMGPPGSRGASG---PAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNIGPAGK 464
Query: 125 YLFLLLDGA-GDPKPTPEAPISSADGRAWFPSESSWQLPQLPAGSTSGSEPRARPGLGPR 183
+ L G G P P A G FP P+ P G + + GL
Sbjct: 465 EGPVGLPGIDGRPGPIGPAGARGEPGNIGFPG------PKGPTGDPGKNGDKGHAGLAGA 518
Query: 184 QLPTGPRDGAAGQGPGRGLTARLGREREIDCGP----RQAGHGGTATDTGRAGSGARH-- 237
+ GP QGP + G+ + GP G G A + G+ G H
Sbjct: 519 RGAPGPDGNNGAQGPPGPQGVQGGKGEQGPPGPPGFQGLPGPSGPAGEVGKPGERGLHGE 578
Query: 238 -------RPPRDRGTPG 247
P +RG PG
Sbjct: 579 FGLPGPAGPRGERGPPG 595
Score = 40.0 bits (92), Expect = 0.002
Identities = 64/227 (28%), Positives = 73/227 (32%), Gaps = 53/227 (23%)
Query: 50 GQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCRALNVSEHAR 109
G AG+R P + G + GG G PG PPG A V +
Sbjct: 514 GLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPPG-PPGFQGLPGPSGPAGEVGKPGE 572
Query: 110 GGFALGLPFGLSGGAYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSWQLPQLPAGST 169
G L FGL G P P G P ES P P GS
Sbjct: 573 RG--LHGEFGLPG-----------------PAGP----RGERGPPGESGAAGPTGPIGSR 609
Query: 170 SGSEP------RARPGL----------GPRQLPTGPRDGAAGQGPGRGLTARLGREREID 213
S P + PG+ GP LP G R GAAG G+G G EI
Sbjct: 610 GPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLP-GER-GAAGIPGGKGEKGEPGLRGEIG 667
Query: 214 CGPRQAGHG-----------GTATDTGRAGSGARHRPPRDRGTPGLR 249
R G G D G AG+ P RG+PG R
Sbjct: 668 NPGRDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGER 714
Score = 39.7 bits (91), Expect = 0.003
Identities = 57/205 (27%), Positives = 69/205 (33%), Gaps = 21/205 (10%)
Query: 50 GQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCRALNVSEHAR 109
G G R R AP ++G+ +G + GS G PPG G A
Sbjct: 217 GLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAG-PPGFP-----GAPGPKGEIGAV 270
Query: 110 GGFALGLPFGLSGGAYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSWQLPQLPAGST 169
G P G G L L G P ++ A G A P + P LP
Sbjct: 271 GNAGPAGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVAG--APGLPG--- 325
Query: 170 SGSEPRARPGLGPRQLPTGPRDGAAGQGPGRGLTARLGREREIDCG-----PRQAGHGGT 224
PR PG TG R G G+ G G + E P +G G
Sbjct: 326 ----PRGIPGPVGAAGATGAR-GLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGK 380
Query: 225 ATDTGRAGSGARHRPPRDRGTPGLR 249
G AGS PP RG+PG R
Sbjct: 381 RGPNGEAGSAGPPGPPGLRGSPGSR 405
Score = 35.4 bits (80), Expect = 0.047
Identities = 56/208 (26%), Positives = 73/208 (35%), Gaps = 30/208 (14%)
Query: 46 RSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCRALNVS 105
+ G+AG+ P P Q GAP +LG S G G P + E G +
Sbjct: 846 KGPSGEAGTAGPPGTPGPQGLL---GAPGILGLPGSRGERGLPGVAGAVGEPGPLGIAGP 902
Query: 106 EHARG-GFALGLPFGLSGGAYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSWQLPQL 164
ARG A+G P G++G + D P + P DG+ E +
Sbjct: 903 PGARGPPGAVGSP-GVNGAPG-----EAGRDGNPGNDGP-PGRDGQPGHKGERGYPGNIG 955
Query: 165 PAGSTSGSEPRARPGLGPRQLPTGPRDGAAGQGPGRGLTARLGREREIDCGPRQA-GHGG 223
P G+ P P GP AG+ RG T G GP A G G
Sbjct: 956 PVGAAGAPGPHG---------PVGP----AGKHGNRGETGPSG-----PVGPAGAVGPRG 997
Query: 224 TATDTGRAGSGARHRPPRDRGTPGLRTH 251
+ G G RG PGL+ H
Sbjct: 998 PSGPQGIRGDKGEPGEKGPRGLPGLKGH 1025
Score = 33.1 bits (74), Expect = 0.24
Identities = 53/198 (26%), Positives = 65/198 (32%), Gaps = 17/198 (8%)
Query: 50 GQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCRALNVSEHAR 109
G AGSR P A G G S SG PG PPG A E R
Sbjct: 772 GPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPG-PPGPA-----------GKEGLR 819
Query: 110 GGFALGLPFGLSGGAYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSWQLPQLPAGST 169
G P G +G AG+ P+ EA + G P G
Sbjct: 820 GPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPGT---PGPQGLLGAPGILGLP 876
Query: 170 SGSEPRARPGLGPRQLPTGPRDGAAGQGPGRGLTARLGREREIDCGPRQAGHGGTATDTG 229
R PG+ GP G AG RG +G ++ P +AG G + G
Sbjct: 877 GSRGERGLPGVAGAVGEPGPL-GIAGPPGARGPPGAVG-SPGVNGAPGEAGRDGNPGNDG 934
Query: 230 RAGSGARHRPPRDRGTPG 247
G + +RG PG
Sbjct: 935 PPGRDGQPGHKGERGYPG 952
Score = 29.6 bits (65), Expect = 2.6
Identities = 24/75 (32%), Positives = 26/75 (34%), Gaps = 9/75 (12%)
Query: 179 GLGPRQL----PTGPRDGAAGQGPGRGLTARLGREREIDCGPRQAGHGGTATDTGRAGSG 234
GLGP + P GP A GP +G G E P Q G G G G
Sbjct: 87 GLGPGPMGLMGPRGPPGAAGAPGP-QGFQGPAGEPGE----PGQTGPAGARGPAGPPGKA 141
Query: 235 ARHRPPRDRGTPGLR 249
P G PG R
Sbjct: 142 GEDGHPGKPGRPGER 156
Score = 29.3 bits (64), Expect = 3.4
Identities = 58/222 (26%), Positives = 69/222 (31%), Gaps = 26/222 (11%)
Query: 36 PSFAVLGPEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGHPPGSAFGV 95
P A P + G AG P G P G G PG P
Sbjct: 101 PPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPGKPGRP------- 153
Query: 96 EAGCRALNVSEHARG-GFALGLP--FGLSGGAYLFLLLDGAGDP--KPTPEAPISSADGR 150
G R + + ARG GLP G+ G L L G P K P AP G
Sbjct: 154 --GERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAP-----GE 206
Query: 151 AWFPSESSWQLPQLPAGSTSGSEPRARPGLGPRQLPTGPRDGAAGQGPGRGLTARLGRER 210
P ++ + G P G P GP GP G G +
Sbjct: 207 NGTPGQTGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGP-PGFPGAPGPKG 265
Query: 211 EI----DCGPRQAGHGGTATDTGRAGSGARHRPPRDRGTPGL 248
EI + GP AG G + G G PP + G GL
Sbjct: 266 EIGAVGNAGP--AGPAGPRGEVGLPGLSGPVGPPGNPGANGL 305
>gi|169160624 PREDICTED: hypothetical protein [Homo sapiens]
Length = 284
Score = 45.1 bits (105), Expect = 6e-05
Identities = 48/175 (27%), Positives = 61/175 (34%), Gaps = 27/175 (15%)
Query: 24 SGKDPKSSPASSPSFAVLGPEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSG 83
S +DP P S P + LG R P RA+ APA GG
Sbjct: 83 SARDPDQEPGSLPRLSQLGQSWRXXXXXXXGPHPPR------RASPRHAPAAAGGVSMGP 136
Query: 84 SPGHPPGSAF---GVEAGCRALNVSEHARGGFALGLPFGLSGGAYLFLLLDGAGDPKPTP 140
SPG G AF G AG + ARGG +P GG GA P P P
Sbjct: 137 SPGGKDGGAFIWGGARAGGGEALTRKRARGG---AVPGDRPGG--------GAASPLPAP 185
Query: 141 -------EAPISSADGRAWFPSESSWQLPQLPAGSTSGSEPRARPGLGPRQLPTG 188
+ DG S + + P+G+ +G + + GL P G
Sbjct: 186 LLASRPRPRGRCAPDGAQAGVGASRLRRRRAPSGTLNGPYAQDKHGLNQVHAPAG 240
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 44.7 bits (104), Expect = 8e-05
Identities = 60/233 (25%), Positives = 78/233 (33%), Gaps = 34/233 (14%)
Query: 26 KDPKSSPASSPSFAVLGPEVRSTGGQAGSRRRPSAPC---SQDRAAAEGAPALLGGSPSS 82
K SP + + +GP G G R RP AP ++ A GA G + +
Sbjct: 286 KGEPGSPGENGAPGQMGPR-----GLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPA 340
Query: 83 GSPGHPPGSAFGVEAGCRALNVSEHARGGFALGLPFGLSGGAYLFLLLDGAGDPKPTPEA 142
G PG P EAG + SE +G P G +G A AG+P +
Sbjct: 341 GPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAA------GPAGNPGADGQP 394
Query: 143 PISSAD------GRAWFPSESSWQLPQLPAGSTSGSEPRARPGLGPRQLPTGPRDGAAGQ 196
A+ G FP PQ P G PG G+ G
Sbjct: 395 GAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPG----------APGSKGD 444
Query: 197 GPGRGLTARLGREREIDCGPRQAGHGGTATDTGRAGSGARHRPPRDRGTPGLR 249
+G +G + P AG G G G PP +RG PG R
Sbjct: 445 TGAKGEPGPVG----VQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSR 493
Score = 42.0 bits (97), Expect = 5e-04
Identities = 70/238 (29%), Positives = 82/238 (34%), Gaps = 28/238 (11%)
Query: 25 GKDPKSSPASSPSFAVLGPEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGS 84
G+ S PA P+ A P R G G P + + A+G P G +G
Sbjct: 782 GESGPSGPAG-PTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGP 840
Query: 85 PG-----HPPGSAFGVEA-GCRALNVSEHARGGFALGLPFGLSGGAYLFLLLDGAGDPKP 138
PG PPG V A G + S G A G P G +G AG P P
Sbjct: 841 PGPAGPAGPPGPIGNVGAPGAKGARGSAGPPG--ATGFP-GAAGRVGPPGPSGNAGPPGP 897
Query: 139 TPEAPISSA------DGRAWFPSESSWQLPQLPAGSTSGSEPRARPGL-GPRQLPTGP-R 190
A G A P E P PAG + PG GP P P
Sbjct: 898 PGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGE------KGSPGADGPAGAPGTPGP 951
Query: 191 DGAAGQGPGRGLTARLGREREIDCGPRQAGHGGTATDTGRAGSGARHRPPRDRGTPGL 248
G AGQ GL + G ER P G G G +G+ PP G PGL
Sbjct: 952 QGIAGQRGVVGLPGQRG-ERGF---PGLPGPSGEPGKQGPSGASGERGPPGPMGPPGL 1005
Score = 41.6 bits (96), Expect = 7e-04
Identities = 71/247 (28%), Positives = 85/247 (34%), Gaps = 38/247 (15%)
Query: 17 PEPAFLRSGKDPKSSPASSPSFAVLGPEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALL 76
P PA R G D + A P GP G AG P A ++ A +G
Sbjct: 316 PGPAGAR-GNDGATGAAGPP-----GPT-----GPAGPPGFPGAVGAKGEAGPQGPRGSE 364
Query: 77 GGSPSSGSPGHPPGSAFGVEAGCRALNVSEHARGGFALGLPFGLSG-----GAYLFLLLD 131
G G PG P + AG + A+G A G P G++G GA
Sbjct: 365 GPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKG--ANGAP-GIAGAPGFPGARGPSGPQ 421
Query: 132 GAGDP------KPTPEAPISSAD-GRAWFPSESSWQLPQLPAGSTSGSEPRARPGLGPRQ 184
G G P P AP S D G P Q P PAG R PG
Sbjct: 422 GPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLP 481
Query: 185 LPTGPRDGAAGQG-PGRGLTARLGREREIDCGPR-QAGHGGTATDTGRAGSGARHRPPRD 242
P G R G +G PG A GP+ AG G+ G GS P +
Sbjct: 482 GPPGERGGPGSRGFPGADGVA----------GPKGPAGERGSPGPAGPKGSPGEAGRPGE 531
Query: 243 RGTPGLR 249
G PG +
Sbjct: 532 AGLPGAK 538
Score = 40.0 bits (92), Expect = 0.002
Identities = 71/265 (26%), Positives = 86/265 (32%), Gaps = 44/265 (16%)
Query: 17 PEPAFLRSGKDPKSSPASSPSFAVLGPEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALL 76
P P R G + P + V GP + G+ GS S A G L
Sbjct: 481 PGPPGERGGPGSRGFPGAD---GVAGP--KGPAGERGSPGPAGPKGSPGEAGRPGEAGLP 535
Query: 77 GGSPSSGSPGH--------PPGSAFGVEAGCRALNVSEHARG-GFALGLPFGLSGGAYLF 127
G +GSPG PPG A + G ARG +G P G G A
Sbjct: 536 GAKGLTGSPGSPGPDGKTGPPGPA--GQDGRPGPPGPPGARGQAGVMGFP-GPKGAAGEP 592
Query: 128 LLLDGAGDPKPTPEAPISSADGRAWFPSESSWQLPQLPAGSTSGSEPRARPGLGPRQLPT 187
G P P + DG A P PAG P PG P
Sbjct: 593 GKAGERGVPGPPGAVGPAGKDGEAGAQGPPG---PAGPAGERGEQGPAGSPGFQGLPGPA 649
Query: 188 GPRDGAAGQGPGRGLTARLGR--------------EREID-----CGPRQA----GHGGT 224
GP G AG+ +G+ LG ER + GPR A G+ G
Sbjct: 650 GP-PGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGA 708
Query: 225 ATDTGRAGSGARHRPPRDRGTPGLR 249
D G G+ P +G PG R
Sbjct: 709 KGDAGAPGAPGSQGAPGLQGMPGER 733
Score = 38.9 bits (89), Expect = 0.004
Identities = 62/227 (27%), Positives = 79/227 (34%), Gaps = 58/227 (25%)
Query: 27 DPKSSPASSPSFAVLGPEVRSTGGQAGSR--RRPSAPCSQDRAAAEGAPALLGGSPSSGS 84
D SP + V GP+ G G R R P+ P +D G P L G G
Sbjct: 97 DGSESPTDQETTGVEGPK-----GDTGPRGPRGPAGPPGRD--GIPGQPGLPGPPGPPGP 149
Query: 85 PGHPPGSAFGVEAGCRALNVSEHARGGFALGLPFGLSGGAYLFLLLDGAGDPKPTPEAPI 144
PG PPG G A + E + GG ++ P G SG P+ P P
Sbjct: 150 PG-PPGLG-GNFAPQLSYGYDEKSTGGISVPGPMGPSG-------------PRGLPGPPG 194
Query: 145 SSADGRAWFPSESSWQLPQLPAGSTSGSEPRARPGLGPRQLPTGPRDGAAGQGPGRGLTA 204
+ P +Q P G EP A +GPR P GP PG+
Sbjct: 195 A--------PGPQGFQGPPGEPG-----EPGASGPMGPRG-PPGP--------PGKN--- 229
Query: 205 RLGREREIDCGPRQAGHGGTATDTGRAGSGARHRPPRDRGTPGLRTH 251
G + E AG G + G G P G PG++ H
Sbjct: 230 --GDDGE-------AGKPGRPGERGPPGPQGARGLPGTAGLPGMKGH 267
Score = 38.1 bits (87), Expect = 0.007
Identities = 63/215 (29%), Positives = 71/215 (33%), Gaps = 30/215 (13%)
Query: 42 GPE-VRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCR 100
GP R G G R P A GAP G +G+PG PGS G
Sbjct: 671 GPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPG-APGS-----QGAP 724
Query: 101 ALNVSEHARGGFALGLPFGLSGGAYLFLLLDGAGDPKPTPE------APISSADGRAWFP 154
L RG L P G G A D P + PI G A P
Sbjct: 725 GLQGMPGERGAAGLPGPKGDRGDAG-----PKGADGSPGKDGVRGLTGPI-GPPGPAGAP 778
Query: 155 SESSWQLPQLPAGSTSGSEPRARPGLGPRQLPTGPRDGAAGQGPGRGLTARLGREREIDC 214
+ P PAG T AR G R P P G AG G + G + E
Sbjct: 779 GDKGESGPSGPAGPTG-----ARGAPGDRGEPGPP--GPAGFAGPPGADGQPGAKGE--- 828
Query: 215 GPRQAGHGGTATDTGRAGSGARHRPPRDRGTPGLR 249
P AG G A G AG P + G PG +
Sbjct: 829 -PGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAK 862
Score = 38.1 bits (87), Expect = 0.007
Identities = 64/234 (27%), Positives = 80/234 (34%), Gaps = 32/234 (13%)
Query: 24 SGKDPKSSPASS-----PSFAVLGPEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGG 78
SG+ K P+ + P + P + G++G P A S R + GA G
Sbjct: 979 SGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGE 1038
Query: 79 SPSSGSPGHP--PGSAFGVEAGCRALNVSEHARGGFALGL-PFGLSGGAYLFLLLDGAGD 135
+ +G PG P PG+ V ++ + E G A + P G G A GD
Sbjct: 1039 TGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAG---PQGPRGD 1095
Query: 136 PKPTPEAPISSADGRAWFPSESSWQLPQLPAGSTSGSEPRARPGLGPRQLPTGPR--DGA 193
T E G F S Q P P GS P G P GPR G+
Sbjct: 1096 KGETGEQGDRGIKGHRGF---SGLQGPPGPPGSPGEQGPSGASG------PAGPRGPPGS 1146
Query: 194 AGQGPGRGLTARLGREREIDCGPRQAGHGGTATDTGRAGSGARHRPPRDRGTPG 247
AG GL P G G TG AG PP G PG
Sbjct: 1147 AGAPGKDGLNGL----------PGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPG 1190
Score = 35.4 bits (80), Expect = 0.047
Identities = 67/247 (27%), Positives = 79/247 (31%), Gaps = 45/247 (18%)
Query: 27 DPKSSPASSPSFAVLGPEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLG--GSPS--- 81
+P AS P P G G +P P + +GA L G G P
Sbjct: 207 EPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKG 266
Query: 82 -------------------SGSPGHPPGSAFGVEAGCRALNVSEHARGGFALGLPFGLSG 122
G PG P + + G R L E R G A G P G G
Sbjct: 267 HRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGL-PGERGRPG-APG-PAGARG 323
Query: 123 --GAYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSWQLPQLPAGSTSGSEPRARPGL 180
GA AG P PT A G E+ PQ P GS R PG
Sbjct: 324 NDGA-----TGAAGPPGPTGPAGPPGFPGAVGAKGEAG---PQGPRGSEGPQGVRGEPG- 374
Query: 181 GPRQLPTGPRDGAAGQGPGRGLTARLGREREIDCGPRQAGHGGTATDTGRAGSGARHRPP 240
P GP GAAG G + G + + P AG G G +G PP
Sbjct: 375 -----PPGPA-GAAGPAGNPGADGQPG-AKGANGAPGIAGAPGFPGARGPSGPQGPGGPP 427
Query: 241 RDRGTPG 247
+G G
Sbjct: 428 GPKGNSG 434
Score = 32.3 bits (72), Expect = 0.40
Identities = 59/206 (28%), Positives = 66/206 (32%), Gaps = 42/206 (20%)
Query: 50 GQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCRALNVSEHAR 109
G G P A G P G +G PG P G R + AR
Sbjct: 203 GPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRP---------GERGPPGPQGAR 253
Query: 110 G--GFALGLPFGLSGGAYLFLLLDGA-GDPKPTPEAPISSADGRAWFPSESSWQLPQLPA 166
G G A GLP G+ G F LDGA GD P + G P E+
Sbjct: 254 GLPGTA-GLP-GMKGHRG-FSGLDGAKGDAGP------AGPKGEPGSPGEN--------- 295
Query: 167 GSTSGSEPRARPGLGPRQLPTGP-----RDGAAGQGPGRGLTARLGREREIDCGPRQAGH 221
G+ PR PG R GP DGA G G T G P G
Sbjct: 296 GAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAG-------PPGFPGA 348
Query: 222 GGTATDTGRAGSGARHRPPRDRGTPG 247
G + G G P RG PG
Sbjct: 349 VGAKGEAGPQGPRGSEGPQGVRGEPG 374
>gi|117938759 GNAS complex locus XLas [Homo sapiens]
Length = 1037
Score = 44.7 bits (104), Expect = 8e-05
Identities = 54/221 (24%), Positives = 65/221 (29%), Gaps = 31/221 (14%)
Query: 24 SGKDPKSSPASSPSFAVLGPEVRSTGGQAGSRRRPSAPCSQDRAAAEGAP-ALLGGSPSS 82
+G D SP A+ GP ++ +G R P ++ A EGA A GG S
Sbjct: 316 AGVDDTPVNMDSPPIALDGPPIKVSGAPDKRERAERPPVEEEAAEMEGAADAAEGGKVPS 375
Query: 83 GSPGHPPGSAFGVEAGCRALNVSEHARGGFALGLPFGLSGGAYLFLLLDGAGDPKPTPEA 142
G P A + RA A P GA TPE
Sbjct: 376 PGYGSPAAGAASADTAARA-----------APAAPADPDSGA--------------TPED 410
Query: 143 PISSA-----DGRAWFPSESSWQLPQLPAGSTSGSEPRARPGLGPRQLPTGPRDGAAGQG 197
P S D A+ S P PA SG+ P A P P D AG
Sbjct: 411 PDSGTAPADPDSGAFAADPDSGAAPAAPADPDSGAAPDAPADPDSGAAPDAPADPDAGAA 470
Query: 198 PGRGLTARLGREREIDCGPRQAGHGGTATDTGRAGSGARHR 238
P R P G A A+ R
Sbjct: 471 PEAPAAPAAAETRAAHVAPAAPDAGAPTAPAASATRAAQVR 511
Score = 35.8 bits (81), Expect = 0.036
Identities = 51/209 (24%), Positives = 66/209 (31%), Gaps = 34/209 (16%)
Query: 4 PLEGQPLRALDLYPEPAFLRSGKDPKSSP--------------ASSPSFAVLGPEVRSTG 49
PLE A P PA + P + P S P+F VL P R
Sbjct: 30 PLEAPGAAAPGAGPSPAEEMETEPPHNEPIPVENDGEACGPPEVSRPNFQVLNPAFR--- 86
Query: 50 GQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCRALNVSEHAR 109
+AG+ S P + P+L G P+ PG P GV AG A +
Sbjct: 87 -EAGAHGSYSPPPEEAMPFEAEQPSLGGFWPTLEQPGFPS----GVHAGLEAFGPALMEP 141
Query: 110 GGFALGLPFGLSGGAYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSWQLPQLPAGST 169
G F+ P GL G + P P P S+ Q+P L G
Sbjct: 142 GAFSGARP-GLGGYS-----------PPPEEAMPFEFDQPAQRGCSQLLLQVPDLAPGGP 189
Query: 170 SGSEPRARPGLGPRQLPTGPRDGAAGQGP 198
+ P P+ L G P
Sbjct: 190 GAAGVPGAPPEEPQALRPAKAGSRGGYSP 218
>gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo
sapiens]
Length = 316
Score = 43.9 bits (102), Expect = 1e-04
Identities = 58/197 (29%), Positives = 73/197 (37%), Gaps = 41/197 (20%)
Query: 42 GPEVRSTGGQAGSRRRPSAPCSQDRAAA------EGAPALLGGSPSSGSP-----GHPPG 90
G + + GG G+ + P PC+ A+ G A L G S SP G P
Sbjct: 95 GGKTQEWGGGTGTPQSPG-PCAPQALASLLGPGKAGCRARLQGGSSGASPRRLPGGRGPA 153
Query: 91 SAFGVEAGC----RALNVSEHARGGFALGLPFGLSGGAYLFLLLDGAGDPKPTPEAPISS 146
+AF VE G R ++++ +R G GLP A L L P P P P S
Sbjct: 154 AAFAVEPGTGQRPRNTSLAQASRSGTVPGLP-----PASLQPLRVPYFAP-PGPHDPTSR 207
Query: 147 ADGRAWF---PSE----------SSWQL----PQLPAGSTSGSEPRARPGLGPRQLPTGP 189
GR PS S W L P P G + + P RP Q P P
Sbjct: 208 GPGRLLTREPPSRKLPPPLPLCRSRWVLAPPPPPAPPGPNAAAHPPLRPPRARLQDPVDP 267
Query: 190 R--DGAAGQGPGRGLTA 204
G +GPG G A
Sbjct: 268 ERCPGGPSRGPGHGTHA 284
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 43.5 bits (101), Expect = 2e-04
Identities = 65/263 (24%), Positives = 86/263 (32%), Gaps = 35/263 (13%)
Query: 17 PEPAFLRSGKDPKSSPAS-SPSFAVLGPEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPAL 75
P P +R P+ S P P + T G G A +G P L
Sbjct: 535 PGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGL 594
Query: 76 LGGSPSSGSPGHPPGSAFGVEAGCRALNVSEHARGGFALGLPFGLSGGAYLFLLLDGAGD 135
G S G PGHP G + +G P G+ G + L G+
Sbjct: 595 PGMPGSDGPPGHPGKEG---PPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGE 651
Query: 136 ------PKPTPEAPISSADGRAWFPSESSWQLPQLPAGSTSGSEPRARPGL-------GP 182
P + + G P P+ P G T + PGL G
Sbjct: 652 KGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGV 711
Query: 183 RQLP-----TGPRD--------GAAGQGPGRGLTARLG-REREIDCGPR----QAGHGGT 224
LP GP+ GA+G+ RGL+ + G R GPR G G
Sbjct: 712 PGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGK 771
Query: 225 ATDTGRAGSGARHRPPRDRGTPG 247
+ G +G H PP +RG PG
Sbjct: 772 SGAKGTSGGDGPHGPPGERGLPG 794
Score = 39.3 bits (90), Expect = 0.003
Identities = 65/233 (27%), Positives = 73/233 (31%), Gaps = 39/233 (16%)
Query: 42 GPEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCRA 101
GP+ R+ G G P + + G P G GS G P E G R
Sbjct: 686 GPKGRT--GPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARG 743
Query: 102 LNVSEHARGGFALGLPFGLSG--GAYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSW 159
L+ RG P G G GA G K T S DG P E
Sbjct: 744 LSGKSGPRGERGPTGPRGQRGPRGA------TGKSGAKGT-----SGGDGPHGPPGERGL 792
Query: 160 QLPQLPAGSTSGSEPRARPG-------------------LGPRQLP--TGPRDGAAGQGP 198
PQ P G P PG GP P GP+ A GP
Sbjct: 793 PGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGP 852
Query: 199 --GRGLTARLGREREIDCGPRQAGHGGTATDTGRAGSGARHRPPRDRGTPGLR 249
RG G E P AG GT D G G+ + P RG PG R
Sbjct: 853 MGERGHPGPPGPPGEQGL-PGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGER 904
Score = 34.3 bits (77), Expect = 0.11
Identities = 65/255 (25%), Positives = 85/255 (33%), Gaps = 55/255 (21%)
Query: 46 RSTGGQAGSRRRPSAPCSQDRAAAEGAPAL------LGGSPSSGSPGHPPGS----AFGV 95
R G G+R P P + +G P L G + + G PG PPG
Sbjct: 451 RGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPG-PPGEDGERGDDG 509
Query: 96 EAGCRALNVSEHARGGFALGLPFGLSGGAYLFLLLDGAGDPKPT--PEAPISSADGRAWF 153
E G R L RG P G+ G + +DG PK + P+ G+
Sbjct: 510 EIGPRGLPGESGPRGLLGPKGPPGIPGPPGV-RGMDGPQGPKGSLGPQGE-PGPPGQQGT 567
Query: 154 PSESSWQLPQLPAGSTSGSEPRARPGL-------GP--------------RQLPTGPRDG 192
P PQ G P+ +PGL GP Q P+GP+
Sbjct: 568 PGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGP 627
Query: 193 AAGQGPG--------RGLTARLGREREI-------DCGPR----QAGHGGTATDTGRAGS 233
GP RGL G + E D G + + G G+ + G G
Sbjct: 628 LGYPGPRGVKGVDGIRGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGP 687
Query: 234 GARHRPPRDRGTPGL 248
R P D G PGL
Sbjct: 688 KGRTGPTGDPGPPGL 702
Score = 34.3 bits (77), Expect = 0.11
Identities = 55/217 (25%), Positives = 68/217 (31%), Gaps = 50/217 (23%)
Query: 43 PEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPG--------HPPGSAFG 94
P G G P AP A G P G ++G PG PPG A
Sbjct: 871 PGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPA-- 928
Query: 95 VEAGCRALNVSEHARGGFALGLPFGLSGGAYLFLLLDGAGDPKPTPEAPISSADGRAWFP 154
S RG G P G G +P P+ P +A G P
Sbjct: 929 ---------GSPGERGAAGSGGPIGPPG--------------RPGPQGPPGAA-GEKGVP 964
Query: 155 SESSWQLPQLPAGSTSGSEPRARPGLGPRQLPTGPRDGAAGQGPGRGLTARLGRE----R 210
E P P G P PG P GP G AG+ +G G++
Sbjct: 965 GEKG---PIGPTGRDGVQGPVGLPG------PAGP-PGVAGEDGDKGEVGDPGQKGTKGN 1014
Query: 211 EIDCGPRQAGHGGTATDTGRAGSGARHRPPRDRGTPG 247
+ + GP G G G+ G+ P RG G
Sbjct: 1015 KGEHGP--PGPPGPIGPVGQPGAAGADGEPGARGPQG 1049
Score = 33.5 bits (75), Expect = 0.18
Identities = 62/250 (24%), Positives = 81/250 (32%), Gaps = 49/250 (19%)
Query: 4 PLEGQPLRALDLYPEPAFLRSGKDPKSSPASSPSFAVLGPEVRSTGGQAGSRRRPSAPCS 63
P G+ L+ P + P+ AVL P + G P
Sbjct: 268 PTPGEEEEILESSLLPPLEEAAHGPRGLKGEKGEPAVLEPGMLVEG----------PPGP 317
Query: 64 QDRAAAEGAPALLGGSPSSGSPGH--PPGSAFGVEAGCRALNVSEHARG--GFALGLPFG 119
+ A G P + G G PG PPG A L S+ A G G +L LPF
Sbjct: 318 EGPAGLIGPPGIQGNPGPVGDPGERGPPGRA--------GLPGSDGAPGPPGTSLMLPFR 369
Query: 120 LSGGAYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSWQLPQLPAGSTSGSEPRARPG 179
G GD P A + A + + + P P G T P +PG
Sbjct: 370 FGSGG---------GDKGPVVAAQEAQAQAILQ-QARLALRGPPGPMGYTGRPGPLGQPG 419
Query: 180 LGPRQLPTGPRDGAAGQGPGRGLTARLGREREIDCGPRQAGHGGTATDTGRAGSGARHRP 239
+ +G +GP +GLT G G A GRAG+
Sbjct: 420 SPGLKGESGDLGPQGPRGP-QGLT----------------GPPGKAGRRGRAGADGARGM 462
Query: 240 PRDRGTPGLR 249
P D G G R
Sbjct: 463 PGDPGVKGDR 472
Score = 32.7 bits (73), Expect = 0.31
Identities = 68/236 (28%), Positives = 80/236 (33%), Gaps = 48/236 (20%)
Query: 42 GPEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCRA 101
GP V + QA A Q R A G P +G + G G P E+G
Sbjct: 378 GPVVAAQEAQA------QAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLG 431
Query: 102 LNVSEHARGGFALGLPFGLSG-----GAYLFLLLDGA----GDPKPTPEAPISSADGRAW 152
+ RG L P G +G GA DGA GDP + DG
Sbjct: 432 ---PQGPRGPQGLTGPPGKAGRRGRAGA------DGARGMPGDPGVKGD---RGFDGLPG 479
Query: 153 FPSESSWQ-------LPQLPA-----GSTSGSEPRARPG-LGPRQL--PTGP-----RDG 192
P E + LP P G PR PG GPR L P GP G
Sbjct: 480 LPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPG 539
Query: 193 AAGQGPGRGLTARLGREREIDCGPRQAGHGGTATDTGRAGSGARHRPPRDRGTPGL 248
G +G LG + E P Q G GT G G+ H +G PGL
Sbjct: 540 VRGMDGPQGPKGSLGPQGE-PGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGL 594
Score = 30.8 bits (68), Expect = 1.2
Identities = 50/197 (25%), Positives = 63/197 (31%), Gaps = 31/197 (15%)
Query: 23 RSGKDPKSSPASSPSFAVLGPE-VRSTGGQAGSRRRPSAPCSQDR---AAAEGAPALLGG 78
++G + PA P GP+ +R G G + RP A G P L G
Sbjct: 1263 KTGPVGPAGPAGKP-----GPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGD 1317
Query: 79 SPSSGSPGH--------PPGSAFGVEAGCRALNVSE------------HARGGFALGLPF 118
+ + G GH PPG E G R L + A G G P
Sbjct: 1318 AGAKGEKGHPGLIGLIGPPGEQ--GEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPP 1375
Query: 119 GLSGGAYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSWQLPQLPAGSTSGSEPRARP 178
GL G A G P E + G P E LP T S +R
Sbjct: 1376 GLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSRL 1435
Query: 179 GLGPRQLPTGPRDGAAG 195
+PTG G+ G
Sbjct: 1436 MQEDEAIPTGGAPGSPG 1452
Score = 30.4 bits (67), Expect = 1.5
Identities = 58/226 (25%), Positives = 74/226 (32%), Gaps = 56/226 (24%)
Query: 31 SPASSPSFAVLGPE-VRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGHPP 89
SP V GP R G++G P P + +G G G PG PP
Sbjct: 1134 SPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPG-PP 1192
Query: 90 GSAFGVEAGCRALNVSEHARGGFAL-GLPFGLSGGAYLFLLLDGAGDPKPT----PEAPI 144
G E G R + ++ RG G P G P PT P P+
Sbjct: 1193 G-----EGGPRGQDGAKGDRGEDGEPGQP----------------GSPGPTGENGPPGPL 1231
Query: 145 SSADGRAWFPSESSWQLPQLPAGSTSGSEPRARPGLGPRQLPTGPRDGAAGQGPG--RGL 202
G A P Q G + +P A G + P GP A GP RGL
Sbjct: 1232 GKR-GPAGSPGSEGRQ-----GGKGAKGDPGAIGAPG-KTGPVGPAGPAGKPGPDGLRGL 1284
Query: 203 TARLGREREIDCGPRQAGHGGTATDTGRAGSGARHRPPRDRGTPGL 248
+G++ GR G+ + PP G PGL
Sbjct: 1285 PGSVGQQ-------------------GRPGATGQAGPPGPVGPPGL 1311
Score = 28.1 bits (61), Expect = 7.6
Identities = 27/87 (31%), Positives = 32/87 (36%), Gaps = 4/87 (4%)
Query: 162 PQLPAGSTSGSEPRARPGL-GPRQLPTGPRDGAAGQGPGRGLTARLGREREIDCGPRQAG 220
P G T P PG GPR P GP QGP G+ LG E P ++G
Sbjct: 1077 PSGEKGETGDVGPMGPPGPPGPRG-PAGPNGADGPQGPPGGV-GNLGPPGE-KGEPGESG 1133
Query: 221 HGGTATDTGRAGSGARHRPPRDRGTPG 247
G + G G + G PG
Sbjct: 1134 SPGIQGEPGVKGPRGERGEKGESGQPG 1160
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 43.5 bits (101), Expect = 2e-04
Identities = 65/263 (24%), Positives = 86/263 (32%), Gaps = 35/263 (13%)
Query: 17 PEPAFLRSGKDPKSSPAS-SPSFAVLGPEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPAL 75
P P +R P+ S P P + T G G A +G P L
Sbjct: 514 PGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGL 573
Query: 76 LGGSPSSGSPGHPPGSAFGVEAGCRALNVSEHARGGFALGLPFGLSGGAYLFLLLDGAGD 135
G S G PGHP G + +G P G+ G + L G+
Sbjct: 574 PGMPGSDGPPGHPGKEG---PPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGE 630
Query: 136 ------PKPTPEAPISSADGRAWFPSESSWQLPQLPAGSTSGSEPRARPGL-------GP 182
P + + G P P+ P G T + PGL G
Sbjct: 631 KGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGV 690
Query: 183 RQLP-----TGPRD--------GAAGQGPGRGLTARLG-REREIDCGPR----QAGHGGT 224
LP GP+ GA+G+ RGL+ + G R GPR G G
Sbjct: 691 PGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGK 750
Query: 225 ATDTGRAGSGARHRPPRDRGTPG 247
+ G +G H PP +RG PG
Sbjct: 751 SGAKGTSGGDGPHGPPGERGLPG 773
Score = 39.3 bits (90), Expect = 0.003
Identities = 65/233 (27%), Positives = 73/233 (31%), Gaps = 39/233 (16%)
Query: 42 GPEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCRA 101
GP+ R+ G G P + + G P G GS G P E G R
Sbjct: 665 GPKGRT--GPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARG 722
Query: 102 LNVSEHARGGFALGLPFGLSG--GAYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSW 159
L+ RG P G G GA G K T S DG P E
Sbjct: 723 LSGKSGPRGERGPTGPRGQRGPRGA------TGKSGAKGT-----SGGDGPHGPPGERGL 771
Query: 160 QLPQLPAGSTSGSEPRARPG-------------------LGPRQLP--TGPRDGAAGQGP 198
PQ P G P PG GP P GP+ A GP
Sbjct: 772 PGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGP 831
Query: 199 --GRGLTARLGREREIDCGPRQAGHGGTATDTGRAGSGARHRPPRDRGTPGLR 249
RG G E P AG GT D G G+ + P RG PG R
Sbjct: 832 MGERGHPGPPGPPGEQGL-PGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGER 883
Score = 34.3 bits (77), Expect = 0.11
Identities = 68/258 (26%), Positives = 85/258 (32%), Gaps = 52/258 (20%)
Query: 3 RPLEGQPLRAL---DLYPEPAFLRSGKDPKSSPASSPSFAVLG----PEVRSTGGQAGSR 55
RP QP RA P ++P+S A P + G P V G
Sbjct: 235 RPQNQQPHRAQRSPQQQPSRLHRPQNQEPQSQAAHGPR-GLKGEKGEPAVLEPGMLVEGP 293
Query: 56 RRPSAPCSQDRAAAEGAPALLGGSPSSGSPGH--PPGSAFGVEAGCRALNVSEHARG--G 111
P P A G P + G G PG PPG A L S+ A G G
Sbjct: 294 PGPEGP-----AGLIGPPGIQGNPGPVGDPGERGPPGRA--------GLPGSDGAPGPPG 340
Query: 112 FALGLPFGLSGGAYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSWQLPQLPAGSTSG 171
+L LPF G GD P A + A + + + P P G T
Sbjct: 341 TSLMLPFRFGSGG---------GDKGPVVAAQEAQAQAILQ-QARLALRGPPGPMGYTGR 390
Query: 172 SEPRARPGLGPRQLPTGPRDGAAGQGPGRGLTARLGREREIDCGPRQAGHGGTATDTGRA 231
P +PG + +G +GP +GLT G G A GRA
Sbjct: 391 PGPLGQPGSPGLKGESGDLGPQGPRGP-QGLT----------------GPPGKAGRRGRA 433
Query: 232 GSGARHRPPRDRGTPGLR 249
G+ P D G G R
Sbjct: 434 GADGARGMPGDPGVKGDR 451
Score = 34.3 bits (77), Expect = 0.11
Identities = 65/255 (25%), Positives = 85/255 (33%), Gaps = 55/255 (21%)
Query: 46 RSTGGQAGSRRRPSAPCSQDRAAAEGAPAL------LGGSPSSGSPGHPPGS----AFGV 95
R G G+R P P + +G P L G + + G PG PPG
Sbjct: 430 RGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPG-PPGEDGERGDDG 488
Query: 96 EAGCRALNVSEHARGGFALGLPFGLSGGAYLFLLLDGAGDPKPT--PEAPISSADGRAWF 153
E G R L RG P G+ G + +DG PK + P+ G+
Sbjct: 489 EIGPRGLPGESGPRGLLGPKGPPGIPGPPGV-RGMDGPQGPKGSLGPQGE-PGPPGQQGT 546
Query: 154 PSESSWQLPQLPAGSTSGSEPRARPGL-------GP--------------RQLPTGPRDG 192
P PQ G P+ +PGL GP Q P+GP+
Sbjct: 547 PGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGP 606
Query: 193 AAGQGPG--------RGLTARLGREREI-------DCGPR----QAGHGGTATDTGRAGS 233
GP RGL G + E D G + + G G+ + G G
Sbjct: 607 LGYPGPRGVKGVDGIRGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGP 666
Query: 234 GARHRPPRDRGTPGL 248
R P D G PGL
Sbjct: 667 KGRTGPTGDPGPPGL 681
Score = 34.3 bits (77), Expect = 0.11
Identities = 55/217 (25%), Positives = 68/217 (31%), Gaps = 50/217 (23%)
Query: 43 PEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPG--------HPPGSAFG 94
P G G P AP A G P G ++G PG PPG A
Sbjct: 850 PGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPA-- 907
Query: 95 VEAGCRALNVSEHARGGFALGLPFGLSGGAYLFLLLDGAGDPKPTPEAPISSADGRAWFP 154
S RG G P G G +P P+ P +A G P
Sbjct: 908 ---------GSPGERGAAGSGGPIGPPG--------------RPGPQGPPGAA-GEKGVP 943
Query: 155 SESSWQLPQLPAGSTSGSEPRARPGLGPRQLPTGPRDGAAGQGPGRGLTARLGRE----R 210
E P P G P PG P GP G AG+ +G G++
Sbjct: 944 GEKG---PIGPTGRDGVQGPVGLPG------PAGP-PGVAGEDGDKGEVGDPGQKGTKGN 993
Query: 211 EIDCGPRQAGHGGTATDTGRAGSGARHRPPRDRGTPG 247
+ + GP G G G+ G+ P RG G
Sbjct: 994 KGEHGP--PGPPGPIGPVGQPGAAGADGEPGARGPQG 1028
Score = 32.7 bits (73), Expect = 0.31
Identities = 68/236 (28%), Positives = 80/236 (33%), Gaps = 48/236 (20%)
Query: 42 GPEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCRA 101
GP V + QA A Q R A G P +G + G G P E+G
Sbjct: 357 GPVVAAQEAQA------QAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLG 410
Query: 102 LNVSEHARGGFALGLPFGLSG-----GAYLFLLLDGA----GDPKPTPEAPISSADGRAW 152
+ RG L P G +G GA DGA GDP + DG
Sbjct: 411 ---PQGPRGPQGLTGPPGKAGRRGRAGA------DGARGMPGDPGVKGD---RGFDGLPG 458
Query: 153 FPSESSWQ-------LPQLPA-----GSTSGSEPRARPG-LGPRQL--PTGP-----RDG 192
P E + LP P G PR PG GPR L P GP G
Sbjct: 459 LPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPG 518
Query: 193 AAGQGPGRGLTARLGREREIDCGPRQAGHGGTATDTGRAGSGARHRPPRDRGTPGL 248
G +G LG + E P Q G GT G G+ H +G PGL
Sbjct: 519 VRGMDGPQGPKGSLGPQGE-PGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGL 573
Score = 30.8 bits (68), Expect = 1.2
Identities = 50/197 (25%), Positives = 63/197 (31%), Gaps = 31/197 (15%)
Query: 23 RSGKDPKSSPASSPSFAVLGPE-VRSTGGQAGSRRRPSAPCSQDR---AAAEGAPALLGG 78
++G + PA P GP+ +R G G + RP A G P L G
Sbjct: 1242 KTGPVGPAGPAGKP-----GPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGD 1296
Query: 79 SPSSGSPGH--------PPGSAFGVEAGCRALNVSE------------HARGGFALGLPF 118
+ + G GH PPG E G R L + A G G P
Sbjct: 1297 AGAKGEKGHPGLIGLIGPPGEQ--GEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPP 1354
Query: 119 GLSGGAYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSWQLPQLPAGSTSGSEPRARP 178
GL G A G P E + G P E LP T S +R
Sbjct: 1355 GLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSRL 1414
Query: 179 GLGPRQLPTGPRDGAAG 195
+PTG G+ G
Sbjct: 1415 MQEDEAIPTGGAPGSPG 1431
Score = 30.4 bits (67), Expect = 1.5
Identities = 58/226 (25%), Positives = 74/226 (32%), Gaps = 56/226 (24%)
Query: 31 SPASSPSFAVLGPE-VRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGHPP 89
SP V GP R G++G P P + +G G G PG PP
Sbjct: 1113 SPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPG-PP 1171
Query: 90 GSAFGVEAGCRALNVSEHARGGFAL-GLPFGLSGGAYLFLLLDGAGDPKPT----PEAPI 144
G E G R + ++ RG G P G P PT P P+
Sbjct: 1172 G-----EGGPRGQDGAKGDRGEDGEPGQP----------------GSPGPTGENGPPGPL 1210
Query: 145 SSADGRAWFPSESSWQLPQLPAGSTSGSEPRARPGLGPRQLPTGPRDGAAGQGPG--RGL 202
G A P Q G + +P A G + P GP A GP RGL
Sbjct: 1211 GKR-GPAGSPGSEGRQ-----GGKGAKGDPGAIGAPG-KTGPVGPAGPAGKPGPDGLRGL 1263
Query: 203 TARLGREREIDCGPRQAGHGGTATDTGRAGSGARHRPPRDRGTPGL 248
+G++ GR G+ + PP G PGL
Sbjct: 1264 PGSVGQQ-------------------GRPGATGQAGPPGPVGPPGL 1290
Score = 28.1 bits (61), Expect = 7.6
Identities = 27/87 (31%), Positives = 32/87 (36%), Gaps = 4/87 (4%)
Query: 162 PQLPAGSTSGSEPRARPGL-GPRQLPTGPRDGAAGQGPGRGLTARLGREREIDCGPRQAG 220
P G T P PG GPR P GP QGP G+ LG E P ++G
Sbjct: 1056 PSGEKGETGDVGPMGPPGPPGPRG-PAGPNGADGPQGPPGGV-GNLGPPGE-KGEPGESG 1112
Query: 221 HGGTATDTGRAGSGARHRPPRDRGTPG 247
G + G G + G PG
Sbjct: 1113 SPGIQGEPGVKGPRGERGEKGESGQPG 1139
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein
[Homo sapiens]
Length = 1736
Score = 43.5 bits (101), Expect = 2e-04
Identities = 65/263 (24%), Positives = 86/263 (32%), Gaps = 35/263 (13%)
Query: 17 PEPAFLRSGKDPKSSPAS-SPSFAVLGPEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPAL 75
P P +R P+ S P P + T G G A +G P L
Sbjct: 621 PGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGL 680
Query: 76 LGGSPSSGSPGHPPGSAFGVEAGCRALNVSEHARGGFALGLPFGLSGGAYLFLLLDGAGD 135
G S G PGHP G + +G P G+ G + L G+
Sbjct: 681 PGMPGSDGPPGHPGKEG---PPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGE 737
Query: 136 ------PKPTPEAPISSADGRAWFPSESSWQLPQLPAGSTSGSEPRARPGL-------GP 182
P + + G P P+ P G T + PGL G
Sbjct: 738 KGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGV 797
Query: 183 RQLP-----TGPRD--------GAAGQGPGRGLTARLG-REREIDCGPR----QAGHGGT 224
LP GP+ GA+G+ RGL+ + G R GPR G G
Sbjct: 798 PGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGK 857
Query: 225 ATDTGRAGSGARHRPPRDRGTPG 247
+ G +G H PP +RG PG
Sbjct: 858 SGAKGTSGGDGPHGPPGERGLPG 880
Score = 39.3 bits (90), Expect = 0.003
Identities = 65/233 (27%), Positives = 73/233 (31%), Gaps = 39/233 (16%)
Query: 42 GPEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCRA 101
GP+ R+ G G P + + G P G GS G P E G R
Sbjct: 772 GPKGRT--GPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARG 829
Query: 102 LNVSEHARGGFALGLPFGLSG--GAYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSW 159
L+ RG P G G GA G K T S DG P E
Sbjct: 830 LSGKSGPRGERGPTGPRGQRGPRGA------TGKSGAKGT-----SGGDGPHGPPGERGL 878
Query: 160 QLPQLPAGSTSGSEPRARPG-------------------LGPRQLP--TGPRDGAAGQGP 198
PQ P G P PG GP P GP+ A GP
Sbjct: 879 PGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGP 938
Query: 199 --GRGLTARLGREREIDCGPRQAGHGGTATDTGRAGSGARHRPPRDRGTPGLR 249
RG G E P AG GT D G G+ + P RG PG R
Sbjct: 939 MGERGHPGPPGPPGEQGL-PGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGER 990
Score = 35.8 bits (81), Expect = 0.036
Identities = 60/238 (25%), Positives = 79/238 (33%), Gaps = 49/238 (20%)
Query: 26 KDPKSSPASSPSFAVLGPEVRSTGGQAGSRRRPSA----------PCSQDRAAAEGAPAL 75
++ + PA S A G G G + P+ P + A G P +
Sbjct: 356 EETELGPALSAETAHSGAAAHGPRGLKGEKGEPAVLEPGMLVEGPPGPEGPAGLIGPPGI 415
Query: 76 LGGSPSSGSPGH--PPGSAFGVEAGCRALNVSEHARG--GFALGLPFGLSGGAYLFLLLD 131
G G PG PPG A L S+ A G G +L LPF G
Sbjct: 416 QGNPGPVGDPGERGPPGRA--------GLPGSDGAPGPPGTSLMLPFRFGSGG------- 460
Query: 132 GAGDPKPTPEAPISSADGRAWFPSESSWQLPQLPAGSTSGSEPRARPGLGPRQLPTGPRD 191
GD P A + A + + + P P G T P +PG + +G
Sbjct: 461 --GDKGPVVAAQEAQAQAILQ-QARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLG 517
Query: 192 GAAGQGPGRGLTARLGREREIDCGPRQAGHGGTATDTGRAGSGARHRPPRDRGTPGLR 249
+GP +GLT G G A GRAG+ P D G G R
Sbjct: 518 PQGPRGP-QGLT----------------GPPGKAGRRGRAGADGARGMPGDPGVKGDR 558
Score = 34.3 bits (77), Expect = 0.11
Identities = 65/255 (25%), Positives = 85/255 (33%), Gaps = 55/255 (21%)
Query: 46 RSTGGQAGSRRRPSAPCSQDRAAAEGAPAL------LGGSPSSGSPGHPPGS----AFGV 95
R G G+R P P + +G P L G + + G PG PPG
Sbjct: 537 RGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPG-PPGEDGERGDDG 595
Query: 96 EAGCRALNVSEHARGGFALGLPFGLSGGAYLFLLLDGAGDPKPT--PEAPISSADGRAWF 153
E G R L RG P G+ G + +DG PK + P+ G+
Sbjct: 596 EIGPRGLPGESGPRGLLGPKGPPGIPGPPGV-RGMDGPQGPKGSLGPQGE-PGPPGQQGT 653
Query: 154 PSESSWQLPQLPAGSTSGSEPRARPGL-------GP--------------RQLPTGPRDG 192
P PQ G P+ +PGL GP Q P+GP+
Sbjct: 654 PGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGP 713
Query: 193 AAGQGPG--------RGLTARLGREREI-------DCGPR----QAGHGGTATDTGRAGS 233
GP RGL G + E D G + + G G+ + G G
Sbjct: 714 LGYPGPRGVKGVDGIRGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGP 773
Query: 234 GARHRPPRDRGTPGL 248
R P D G PGL
Sbjct: 774 KGRTGPTGDPGPPGL 788
Score = 34.3 bits (77), Expect = 0.11
Identities = 55/217 (25%), Positives = 68/217 (31%), Gaps = 50/217 (23%)
Query: 43 PEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPG--------HPPGSAFG 94
P G G P AP A G P G ++G PG PPG A
Sbjct: 957 PGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPA-- 1014
Query: 95 VEAGCRALNVSEHARGGFALGLPFGLSGGAYLFLLLDGAGDPKPTPEAPISSADGRAWFP 154
S RG G P G G +P P+ P +A G P
Sbjct: 1015 ---------GSPGERGAAGSGGPIGPPG--------------RPGPQGPPGAA-GEKGVP 1050
Query: 155 SESSWQLPQLPAGSTSGSEPRARPGLGPRQLPTGPRDGAAGQGPGRGLTARLGRE----R 210
E P P G P PG P GP G AG+ +G G++
Sbjct: 1051 GEKG---PIGPTGRDGVQGPVGLPG------PAGP-PGVAGEDGDKGEVGDPGQKGTKGN 1100
Query: 211 EIDCGPRQAGHGGTATDTGRAGSGARHRPPRDRGTPG 247
+ + GP G G G+ G+ P RG G
Sbjct: 1101 KGEHGP--PGPPGPIGPVGQPGAAGADGEPGARGPQG 1135
Score = 32.7 bits (73), Expect = 0.31
Identities = 68/236 (28%), Positives = 80/236 (33%), Gaps = 48/236 (20%)
Query: 42 GPEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCRA 101
GP V + QA A Q R A G P +G + G G P E+G
Sbjct: 464 GPVVAAQEAQA------QAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLG 517
Query: 102 LNVSEHARGGFALGLPFGLSG-----GAYLFLLLDGA----GDPKPTPEAPISSADGRAW 152
+ RG L P G +G GA DGA GDP + DG
Sbjct: 518 ---PQGPRGPQGLTGPPGKAGRRGRAGA------DGARGMPGDPGVKGD---RGFDGLPG 565
Query: 153 FPSESSWQ-------LPQLPA-----GSTSGSEPRARPG-LGPRQL--PTGP-----RDG 192
P E + LP P G PR PG GPR L P GP G
Sbjct: 566 LPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPG 625
Query: 193 AAGQGPGRGLTARLGREREIDCGPRQAGHGGTATDTGRAGSGARHRPPRDRGTPGL 248
G +G LG + E P Q G GT G G+ H +G PGL
Sbjct: 626 VRGMDGPQGPKGSLGPQGE-PGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGL 680
Score = 30.8 bits (68), Expect = 1.2
Identities = 50/197 (25%), Positives = 63/197 (31%), Gaps = 31/197 (15%)
Query: 23 RSGKDPKSSPASSPSFAVLGPE-VRSTGGQAGSRRRPSAPCSQDR---AAAEGAPALLGG 78
++G + PA P GP+ +R G G + RP A G P L G
Sbjct: 1349 KTGPVGPAGPAGKP-----GPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGD 1403
Query: 79 SPSSGSPGH--------PPGSAFGVEAGCRALNVSE------------HARGGFALGLPF 118
+ + G GH PPG E G R L + A G G P
Sbjct: 1404 AGAKGEKGHPGLIGLIGPPGEQ--GEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPP 1461
Query: 119 GLSGGAYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSWQLPQLPAGSTSGSEPRARP 178
GL G A G P E + G P E LP T S +R
Sbjct: 1462 GLPGPAGPKGAKGATGPGGPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSRL 1521
Query: 179 GLGPRQLPTGPRDGAAG 195
+PTG G+ G
Sbjct: 1522 MQEDEAIPTGGAPGSPG 1538
Score = 30.4 bits (67), Expect = 1.5
Identities = 58/226 (25%), Positives = 74/226 (32%), Gaps = 56/226 (24%)
Query: 31 SPASSPSFAVLGPE-VRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGHPP 89
SP V GP R G++G P P + +G G G PG PP
Sbjct: 1220 SPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPG-PP 1278
Query: 90 GSAFGVEAGCRALNVSEHARGGFAL-GLPFGLSGGAYLFLLLDGAGDPKPT----PEAPI 144
G E G R + ++ RG G P G P PT P P+
Sbjct: 1279 G-----EGGPRGQDGAKGDRGEDGEPGQP----------------GSPGPTGENGPPGPL 1317
Query: 145 SSADGRAWFPSESSWQLPQLPAGSTSGSEPRARPGLGPRQLPTGPRDGAAGQGPG--RGL 202
G A P Q G + +P A G + P GP A GP RGL
Sbjct: 1318 GKR-GPAGSPGSEGRQ-----GGKGAKGDPGAIGAPG-KTGPVGPAGPAGKPGPDGLRGL 1370
Query: 203 TARLGREREIDCGPRQAGHGGTATDTGRAGSGARHRPPRDRGTPGL 248
+G++ GR G+ + PP G PGL
Sbjct: 1371 PGSVGQQ-------------------GRPGATGQAGPPGPVGPPGL 1397
Score = 28.1 bits (61), Expect = 7.6
Identities = 27/87 (31%), Positives = 32/87 (36%), Gaps = 4/87 (4%)
Query: 162 PQLPAGSTSGSEPRARPGL-GPRQLPTGPRDGAAGQGPGRGLTARLGREREIDCGPRQAG 220
P G T P PG GPR P GP QGP G+ LG E P ++G
Sbjct: 1163 PSGEKGETGDVGPMGPPGPPGPRG-PAGPNGADGPQGPPGGV-GNLGPPGE-KGEPGESG 1219
Query: 221 HGGTATDTGRAGSGARHRPPRDRGTPG 247
G + G G + G PG
Sbjct: 1220 SPGIQGEPGVKGPRGERGEKGESGQPG 1246
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 43.1 bits (100), Expect = 2e-04
Identities = 66/223 (29%), Positives = 75/223 (33%), Gaps = 40/223 (17%)
Query: 46 RSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGHP-----PGSAFGVEAGCR 100
R G AGSR P EG P G G PG P G A G +
Sbjct: 1497 RGPPGPAGSRGLPGVAGRPGAKGPEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEK 1556
Query: 101 ALNVSEHARGGFALGLPFGLSGGAYLFLLLDGAGDPK--PTPEAPISSADGRAWFPSESS 158
RG + G G L+L G PK P PI GRA P +S
Sbjct: 1557 GDVGPAGPRGATGVQGERGPPG-----LVLPGDPGPKGDPGDRGPI-GLTGRAGPPGDSG 1610
Query: 159 WQLPQLPAGSTSGSEPRARPGLGPRQLPTGP--RDGAAG----QGP--GRGLTARLGRER 210
P G PG P GP RDG G +GP GL + G ER
Sbjct: 1611 ------PPGEKGDPGRPGPPG------PVGPRGRDGEVGEKGDEGPPGDPGLPGKAG-ER 1657
Query: 211 EIDCGP------RQAGHGGTATDTGRAGSGARHRPPRDRGTPG 247
+ P + G G + GR GS P DRG PG
Sbjct: 1658 GLRGAPGVRGPVGEKGDQGDPGEDGRNGSPGSSGPKGDRGEPG 1700
Score = 41.6 bits (96), Expect = 7e-04
Identities = 67/240 (27%), Positives = 80/240 (33%), Gaps = 54/240 (22%)
Query: 50 GQAGSRRRPSAPCSQDRAAAEGAPALLG--GSPSSGSPGHPPGSAFGVEAGCRA-LNVSE 106
GQ P P + G P G G P P PG+A + G R
Sbjct: 1353 GQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDPGPRGPPGLPGTAMKGDKGDRGERGPPG 1412
Query: 107 HARGGFALGLPFGLSGGAYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSWQLPQLPA 166
GG A G P GL G L G+ P P+ P+ G+ +S P LP
Sbjct: 1413 PGEGGIAPGEP-GLPG-------LPGS----PGPQGPVGPP-GKKGEKGDSEDGAPGLPG 1459
Query: 167 --GSTSGSEPRARPG-LGPR-----------------QLPTGP-----------RDGAAG 195
GS PR PG +GP+ + P GP R GA G
Sbjct: 1460 QPGSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGERGPPGPAGSRGLPGVAGRPGAKG 1519
Query: 196 QGPGRGLTARLGREREID-------CGPRQAGHGGTATDTGRAGSGARHRPPRDRGTPGL 248
G T R G + E GP AG G D G AG +RG PGL
Sbjct: 1520 PEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAGPRGATGVQGERGPPGL 1579
Score = 37.7 bits (86), Expect = 0.010
Identities = 59/231 (25%), Positives = 80/231 (34%), Gaps = 36/231 (15%)
Query: 43 PEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCRAL 102
P VR G+ G + P R + G+ G G PG PPG G R
Sbjct: 1663 PGVRGPVGEKGDQGDPG---EDGRNGSPGSSGPKGDRGEPGPPG-PPGRLVDTGPGAREK 1718
Query: 103 NV-----SEHARGGFALGLPFGLSGGAYLFLLLDGAGDPKPTPEAPISSA---------- 147
E RG G P GL G + G P P + +
Sbjct: 1719 GEPGDRGQEGPRG--PKGDP-GLPGAPGERGIEGFRGPPGPQGDPGVRGPAGEKGDRGPP 1775
Query: 148 --DGRAWFPSESSWQLPQLPAGSTSGSEPRARPGL----GPRQLP--TGPRD--GAAGQG 197
DGR+ + P P G+ + R GL G + LP +GP G G+
Sbjct: 1776 GLDGRSGLDGKPGAAGPSGPNGAAGKAGDPGRDGLPGLRGEQGLPGPSGPPGLPGKPGED 1835
Query: 198 PGRGLTARLGREREIDCGPRQAGHGGTATDTGRAGSGARHRPPRDRGTPGL 248
GL + G + P + G G D+G +G R P +RG PG+
Sbjct: 1836 GKPGLNGKNGEPGD----PGEDGRKGEKGDSGASGREGRDGPKGERGAPGI 1882
Score = 37.4 bits (85), Expect = 0.012
Identities = 63/247 (25%), Positives = 77/247 (31%), Gaps = 45/247 (18%)
Query: 22 LRSGKDPKSSPASSPSFAVLGPE-------VRSTGGQAGSRRRPSAPCSQDRAAAEGAPA 74
LR P P GP+ + G G+ RP +P GAP
Sbjct: 1264 LRGQVGPPGDPGLPGRTGAPGPQGPPGSATAKGERGFPGADGRPGSPGRAGNPGTPGAPG 1323
Query: 75 LLGGSPSSGSPGHPPGSAFGVEAGCRALNVSEHARGGFALGLPFGLSGGAYLFLLLDGAG 134
L GSP P PG E G R A G G GL G G
Sbjct: 1324 -LKGSPGLPGPRGDPG-----ERGPRGPKGEPGAPGQVIGGEGPGLPG---------RKG 1368
Query: 135 DPKPT----PEAPISSADGRAWFPSESSWQLPQLPAGSTSGSE----PRARPGLGPRQLP 186
DP P+ P P+ R P LP + G + R PG G +
Sbjct: 1369 DPGPSGPPGPRGPLGDPGPRG---------PPGLPGTAMKGDKGDRGERGPPGPGEGGIA 1419
Query: 187 TGP--RDGAAGQGPGRGLTARLGRERE----IDCGPRQAGHGGTATDTGRAGSGARHRPP 240
G G G +G G++ E D P G G+ + G G P
Sbjct: 1420 PGEPGLPGLPGSPGPQGPVGPPGKKGEKGDSEDGAPGLPGQPGSPGEQGPRGPPGAIGPK 1479
Query: 241 RDRGTPG 247
DRG PG
Sbjct: 1480 GDRGFPG 1486
Score = 36.6 bits (83), Expect = 0.021
Identities = 64/237 (27%), Positives = 78/237 (32%), Gaps = 24/237 (10%)
Query: 28 PKSSPASSPSFAVLGPEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSS---GS 84
P + P+ AV P G G + P P GAP G S GS
Sbjct: 2214 PPGRGLTGPTGAVGLPGPPGPSGLVGPQGSPGLPGQVGETGKPGAPGRDGASGKDGDRGS 2273
Query: 85 PGHPPGSAFGVEAGCRALNVSEHARGGFALGLPFGLSG--GAYLFLLLDGAGDP------ 136
PG P G + A G +GLP G G GA L D G+P
Sbjct: 2274 PGVPGSPGLPGPVGPKGEPGPTGAPGQAVVGLP-GAKGEKGAPGGLAGDLVGEPGAKGDR 2332
Query: 137 -KPTPEAPISSADGRAWFPSESSWQLPQLPAGSTSGSEPRARPGLGPRQLPTGPRDGAAG 195
P P A GRA P + G+ + PG+G P P G G
Sbjct: 2333 GLPGPRGEKGEA-GRAGEPGDPG---EDGQKGAPGPKGFKGDPGVGVPGSPGPP--GPPG 2386
Query: 196 QGPGRGLTARLGREREI----DCGPR-QAGHGGTATDTGRAGSGARHRPPRDRGTPG 247
GL G + GPR + G G + + G AG R P G PG
Sbjct: 2387 VKGDLGLPGLPGAPGVVGFPGQTGPRGEMGQPGPSGERGLAGPPGREGIPGPLGPPG 2443
Score = 35.0 bits (79), Expect = 0.062
Identities = 66/262 (25%), Positives = 83/262 (31%), Gaps = 40/262 (15%)
Query: 26 KDPKSSPASSPSFAVLG----PEVRSTGGQAGSRRR---PSAPCSQDRAAAEGAPALLG- 77
K K P S+ G P ++ G+ G R + P P + A EG P L G
Sbjct: 2113 KGAKGEPGSNGDQGPKGDRGVPGIKGDRGEPGPRGQDGNPGLPGERGMAGPEGKPGLQGP 2172
Query: 78 -GSPSS----GSPGHPPGSAFGVEAGCRALNVSEHARGGF------------ALGLP--- 117
G P G PG P AG + + + G A+GLP
Sbjct: 2173 RGPPGPVGGHGDPGPPGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLTGPTGAVGLPGPP 2232
Query: 118 -----FGLSGGAYLFLLLDGAGDPKPTPEAPISSADGRAWFPS-ESSWQLPQLPAGSTSG 171
G G L + G P S DG P S LP P G
Sbjct: 2233 GPSGLVGPQGSPGLPGQVGETGKPGAPGRDGASGKDGDRGSPGVPGSPGLPG-PVGPKGE 2291
Query: 172 SEPRARPGLGPRQLPTGPRDGAAGQGPGRGLTARLGREREIDC-GPR----QAGHGGTAT 226
P PG LP + A G L G + + GPR +AG G
Sbjct: 2292 PGPTGAPGQAVVGLPGAKGEKGAPGGLAGDLVGEPGAKGDRGLPGPRGEKGEAGRAGEPG 2351
Query: 227 DTGRAGSGARHRPPRDRGTPGL 248
D G G P +G PG+
Sbjct: 2352 DPGEDGQKGAPGPKGFKGDPGV 2373
Score = 33.5 bits (75), Expect = 0.18
Identities = 66/257 (25%), Positives = 83/257 (32%), Gaps = 42/257 (16%)
Query: 17 PEPAFLRSGKDPKSSPASSPSFAVLGPE-VRSTGGQAGSRRRPSAPCSQDRAAAEGAPAL 75
P L PK P + G G G + P P G
Sbjct: 1576 PPGLVLPGDPGPKGDPGDRGPIGLTGRAGPPGDSGPPGEKGDPGRPGPPGPVGPRGRDGE 1635
Query: 76 LGGSPSSGSPGHP--PGSAFGVEAGCRALNVSEHARGGFALGLPFGLSG-----GAYLFL 128
+G G PG P PG +AG R L + RG P G G G
Sbjct: 1636 VGEKGDEGPPGDPGLPG-----KAGERGLRGAPGVRG------PVGEKGDQGDPGEDGRN 1684
Query: 129 LLDGAGDPK-----PTPEAP----ISSADG--RAWFPSESSWQLPQLPAGSTSGSEPRAR 177
G+ PK P P P + + G P + + P+ P G
Sbjct: 1685 GSPGSSGPKGDRGEPGPPGPPGRLVDTGPGAREKGEPGDRGQEGPRGPKGDPGLPGAPGE 1744
Query: 178 PGLGPRQLPTGPRD-----GAAGQGPGRGLTARLGREREIDCGPRQAGHGGTATDTGRAG 232
G+ + P GP+ G AG+ RG GR +D P AG G G+AG
Sbjct: 1745 RGIEGFRGPPGPQGDPGVRGPAGEKGDRGPPGLDGRSG-LDGKPGAAGPSGPNGAAGKAG 1803
Query: 233 SGARHRPPRDRGTPGLR 249
P RD G PGLR
Sbjct: 1804 D-----PGRD-GLPGLR 1814
Score = 31.6 bits (70), Expect = 0.68
Identities = 49/180 (27%), Positives = 59/180 (32%), Gaps = 31/180 (17%)
Query: 77 GGSPSSGSPGHPPGSAFGVEAGCRALNVSEHARG--GFALGL--PFGLSGGAYLFLLLDG 132
G S G PG F E G + +G G ALG P G SG A
Sbjct: 1982 GDSGEQGPPGKEGPIGFPGERGLKGDRGDPGPQGPPGLALGERGPPGPSGLA-------- 2033
Query: 133 AGDP-KP-TPEAPISSAD-GRAWFPSESSWQLPQLPAGSTSGSEPRARPGLGPRQLPTGP 189
G+P KP P P + G A P E + + G P PG P GP
Sbjct: 2034 -GEPGKPGIPGLPGRAGGVGEAGRPGERGERGEKGERGEQGRDGPPGLPGTPGPPGPPGP 2092
Query: 190 RDGAAGQGPGRGLTARLGREREIDCGPRQAGHGGTATDTGRAGSGARHRPPRDRGTPGLR 249
+ GPG + G G G GS P DRG PG++
Sbjct: 2093 KVSVDEPGPGLS---------------GEQGPPGLKGAKGEPGSNGDQGPKGDRGVPGIK 2137
Score = 31.2 bits (69), Expect = 0.89
Identities = 58/213 (27%), Positives = 76/213 (35%), Gaps = 46/213 (21%)
Query: 43 PEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCRAL 102
P VR G+ G R P R+ +G P G S +G+ G +AG
Sbjct: 1760 PGVRGPAGEKGDRGPPGL---DGRSGLDGKPGAAGPSGPNGAAG---------KAGDPGR 1807
Query: 103 NVSEHARGGFALGLPFGLSGGAYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSWQLP 162
+ RG GLP G SG L G P + ++ +G P E +
Sbjct: 1808 DGLPGLRG--EQGLP-GPSGPPGL------PGKPGEDGKPGLNGKNGEPGDPGEDGRKGE 1858
Query: 163 QLPAGSTSGSE-------PRARPG-LGPRQLPTGPRDGAAGQGPGRGLTARLGREREIDC 214
+ +G+ SG E R PG LGP+ P P G G PG+G
Sbjct: 1859 KGDSGA-SGREGRDGPKGERGAPGILGPQGPPGLP--GPVGP-PGQGF------------ 1902
Query: 215 GPRQAGHGGTATDTGRAGSGARHRPPRDRGTPG 247
P G G D G GS P +RG G
Sbjct: 1903 -PGVPGGTGPKGDRGETGSKGEQGLPGERGLRG 1934
Score = 30.4 bits (67), Expect = 1.5
Identities = 56/202 (27%), Positives = 70/202 (34%), Gaps = 30/202 (14%)
Query: 50 GQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCRALNVSEHAR 109
G+ G R + +G P L G + G PG PPG V+ L+ +
Sbjct: 2055 GRPGERGERGEKGERGEQGRDGPPGLPG---TPGPPG-PPGPKVSVDEPGPGLSGEQG-- 2108
Query: 110 GGFALGLPFGLSGGAYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSWQ-LPQLPAGS 168
P GL G GD P + + G P P LP G
Sbjct: 2109 -------PPGLKGAKGE---PGSNGDQGPKGDRGVPGIKGDRGEPGPRGQDGNPGLP-GE 2157
Query: 169 TSGSEPRARPGL-GPRQLPTGPRDGAAGQGP--GRGLTARLGREREIDCGPRQAGHGGTA 225
+ P +PGL GPR P GP G GP GL G + GP +G G
Sbjct: 2158 RGMAGPEGKPGLQGPRG-PPGPVGGHGDPGPPGAPGLAGPAGPQ-----GP--SGLKGEP 2209
Query: 226 TDTGRAGSGARHRPPRDRGTPG 247
+TG G G P G PG
Sbjct: 2210 GETGPPGRGLT-GPTGAVGLPG 2230
Score = 30.0 bits (66), Expect = 2.0
Identities = 55/209 (26%), Positives = 66/209 (31%), Gaps = 35/209 (16%)
Query: 43 PEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCRAL 102
P V GQ G R P G P G G PG PPGS G
Sbjct: 2400 PGVVGFPGQTGPRGEMGQPGPSGERGLAGPPGREGIPGPLGPPG-PPGS-----VGPPGA 2453
Query: 103 NVSEHARGGFALGLPFGLSGGAYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSWQLP 162
+ + +G +GLP G E I DGR P + +
Sbjct: 2454 SGLKGDKGDPGVGLP----------------GPRGERGEPGIRGEDGR---PGQEGPRGL 2494
Query: 163 QLPAGSTSGSEPRARPGLGPRQLPTGPRDGAAGQGP--GRGLTARLGREREIDCGPRQA- 219
P GS E + +G L D A GP RG +G GPR
Sbjct: 2495 TGPPGSR--GERGEKGDVGSAGLKGDKGDSAVILGPPGPRGAKGDMGER-----GPRGLD 2547
Query: 220 GHGGTATDTGRAGSGARHRPPRDRGTPGL 248
G G D G G P D+G+ GL
Sbjct: 2548 GDKGPRGDNGDPGDKGSKGEPGDKGSAGL 2576
Score = 29.6 bits (65), Expect = 2.6
Identities = 62/236 (26%), Positives = 74/236 (31%), Gaps = 41/236 (17%)
Query: 46 RSTGGQAGSRRRPSAPCSQDRAAAEGAPALLG--GSP-SSGSPGHPPGSAFGVEAGCRAL 102
R G G + P + A G LLG G P ++G PG P G R
Sbjct: 2553 RGDNGDPGDKGSKGEPGDKGSAGLPGLRGLLGPQGQPGAAGIPGDPGSPGKDGVPGIRG- 2611
Query: 103 NVSEHARGGFALGLPFGLSG--GAYLFLLLDG-------AGDPKPTPEAPISSADGRAWF 153
+G P GL G G LDG AG P A G
Sbjct: 2612 -----EKGDVGFMGPRGLKGERGVKGACGLDGEKGDKGEAGPPGRPGLAGHKGEMGEPGV 2666
Query: 154 PSESS---------------WQLPQLPAGSTSGSEPRARPGLGPRQLPTGPRDGAAG-QG 197
P +S + P G R PG+G P+G DG+AG G
Sbjct: 2667 PGQSGAPGKEGLIGPKGDRGFDGQPGPKGDQGEKGERGTPGIGGFPGPSG-NDGSAGPPG 2725
Query: 198 P-----GRGLTARLGREREI-DCGPRQAGHGGTATDTGRAGSGARHRPPRDRGTPG 247
P RG G++ E G R G G G G R P RG G
Sbjct: 2726 PPGSVGPRGPEGLQGQKGERGPPGERVVGAPGVPGAPGERGEQGRPGPAGPRGEKG 2781
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 42.7 bits (99), Expect = 3e-04
Identities = 64/225 (28%), Positives = 72/225 (32%), Gaps = 33/225 (14%)
Query: 32 PASSPSFAVLGPEVRSTGGQAGSRRRPSA---PCSQDRAAAEGAPALLGGSPSSGSPGH- 87
P + LGP R G G R P P + A G G SG+PG
Sbjct: 698 PGDPGAVGPLGP--RGERGNPGERGEPGITGLPGEKGMAGGHGPDGPKGSPGPSGTPGDT 755
Query: 88 -PPG-SAFGVEAGCRALNVSEHARGGFALGLPFGLSGGAYLFLLLDGA-GDPKPTPEAPI 144
PPG E G + RGG G +G DGA G P P
Sbjct: 756 GPPGLQGMPGERGIAGTPGPKGDRGGIGEKGAEGTAGN-------DGARGLPGPLGPPGP 808
Query: 145 SSADGRAWFPSESSWQLPQLPAGSTSGSEPRARPGLGPRQLPTGPRDGAAGQGPGRGLTA 204
+ G P P G R PG PTG A QGP G
Sbjct: 809 AGPTGEKGEPG---------PRGLVGPPGSRGNPGSRGENGPTGAVGFAGPQGPD-GQPG 858
Query: 205 RLGREREIDCGPRQAGHGGTATDTGRAGSGARHRPPRDRGTPGLR 249
G E P Q G G+ G AGS H P G PGL+
Sbjct: 859 VKGEPGE----PGQKGDAGSPGPQGLAGSPGPHGP---NGVPGLK 896
Score = 39.7 bits (91), Expect = 0.003
Identities = 55/213 (25%), Positives = 68/213 (31%), Gaps = 39/213 (18%)
Query: 43 PEVRSTGGQAGSRRRPSAPCSQDRAAA------EGAPALLGGSPSSGSPGHP--PGSAFG 94
P V+ G+ G + +P Q A + G P L GG + G PG PGSA
Sbjct: 857 PGVKGEPGEPGQKGDAGSPGPQGLAGSPGPHGPNGVPGLKGGRGTQGPPGATGFPGSAGR 916
Query: 95 VEAGCRALNVSEHARGGFALGLPFGLSGGAYLFLLLDGAGDPKPTPEAPISSADGRAWFP 154
V P G +G G P E G P
Sbjct: 917 VG--------------------PPGPAG---------APGPAGPLGEPGKEGPPGLRGDP 947
Query: 155 SESSWQLPQLPAGSTSGSEPRARPGLGPRQLPTGPRDGAAGQGPGRGLTARLGREREIDC 214
+ PAG G + PG + P GP G AG RG+ G+ E
Sbjct: 948 GSHGRVGDRGPAGPPGGPGDKGDPGEDGQPGPDGP-PGPAGTTGQRGIVGMPGQRGERGM 1006
Query: 215 GPRQAGHGGTATDTGRAGSGARHRPPRDRGTPG 247
P G GT G G+ PP G PG
Sbjct: 1007 -PGLPGPAGTPGKVGPTGATGDKGPPGPVGPPG 1038
Score = 38.1 bits (87), Expect = 0.007
Identities = 59/229 (25%), Positives = 73/229 (31%), Gaps = 33/229 (14%)
Query: 28 PKSSPASSPSFAVLGPE-VRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPG 86
PK SP S + GP ++ G+ G P + +GA G + G PG
Sbjct: 742 PKGSPGPSGTPGDTGPPGLQGMPGERGIAGTPGPKGDRGGIGEKGAEGTAGNDGARGLPG 801
Query: 87 H--PPGSAFGV----EAGCRALNVSEHARGGFALGLPFGLSGGAYLFLLLDGAGDPKPTP 140
PPG A E G R L +RG G +G AG P
Sbjct: 802 PLGPPGPAGPTGEKGEPGPRGLVGPPGSRGNPGSRGENGPTGAVGF------AGPQGPDG 855
Query: 141 EAPISSADGRAWFPSESSWQLPQLPAGSTSGSEPRARPGLGPRQLPTGPRDGAAGQGPGR 200
+ + G ++ PQ AGS P PGL + G QGP
Sbjct: 856 QPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPHGPNGVPGL---------KGGRGTQGPP- 905
Query: 201 GLTARLGREREIDCGPRQAGHGGTATDTGRAGSGARHRPPRDRGTPGLR 249
G T P AG G G G P G PGLR
Sbjct: 906 GATGF----------PGSAGRVGPPGPAGAPGPAGPLGEPGKEGPPGLR 944
Score = 36.6 bits (83), Expect = 0.021
Identities = 60/251 (23%), Positives = 74/251 (29%), Gaps = 42/251 (16%)
Query: 15 LYPEPAFLRSGKDPKSSPASSPSFAVLGPEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPA 74
L P +R P P S GP G+ G + RP Q G P
Sbjct: 120 LVPVVTGIRGRPGPAGPPGSQ------GPR-----GERGPKGRPGPRGPQGIDGEPGVPG 168
Query: 75 LLGGSPSSGSPGHPPGSAFGVEAGCRALNVSEHARGGFALGL------PFGLSGGAYLFL 128
G G P HP + + E + G +GL P G G L
Sbjct: 169 QPGAPGPPGHPSHPGPDGLSRPFSAQMAGLDEKSGLGSQVGLMPGSVGPVGPRGPQGLQG 228
Query: 129 LLDGAGDPKPTPEAPISSADGRAWFPSESSWQLPQLPAGSTSGSEPRARPGL-------- 180
GAG P P E P P GS P +PG
Sbjct: 229 QQGGAGPTGP---------------PGEPGDPGPMGPIGSRGPEGPPGKPGEDGEPGRNG 273
Query: 181 GPRQLPTGPRDGAAGQGPGRGLTARLGREREIDC-GPR-QAGHGGTATDTGRAGSGARHR 238
P ++ GA G GL G GP+ + G G+ + G G
Sbjct: 274 NPGEVGFAGSPGARGFPGAPGLPGLKGHRGHKGLEGPKGEVGAPGSKGEAGPTGPMGAMG 333
Query: 239 PPRDRGTPGLR 249
P RG PG R
Sbjct: 334 PLGPRGMPGER 344
Score = 36.2 bits (82), Expect = 0.028
Identities = 59/217 (27%), Positives = 69/217 (31%), Gaps = 36/217 (16%)
Query: 43 PEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLG--GSPS-SGSPGHPPGSAFGVEAGC 99
P R G GSR P + A G G G P G PG P G
Sbjct: 818 PGPRGLVGPPGSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGP 877
Query: 100 RALNVSEHARGGFALGLPFGLSGGAYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSW 159
+ L S G P G+ G L G G P G FP +
Sbjct: 878 QGLAGSPGPHG------PNGVPG------LKGGRGTQGPP---------GATGFPGSAGR 916
Query: 160 QLPQLPAGSTSGSEPRARPGL-GPRQLPTGPRD-------GAAGQGPGRGLTARLGRERE 211
P PAG+ + P PG GP L P G AG G G G + +
Sbjct: 917 VGPPGPAGAPGPAGPLGEPGKEGPPGLRGDPGSHGRVGDRGPAGPPGGPGDKGDPGEDGQ 976
Query: 212 IDCGPRQAGHGGTATDTGRAGSGARHRPPRDRGTPGL 248
P G G A TG+ G +RG PGL
Sbjct: 977 ----PGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGL 1009
Score = 35.8 bits (81), Expect = 0.036
Identities = 62/219 (28%), Positives = 69/219 (31%), Gaps = 35/219 (15%)
Query: 40 VLGPEVR-STGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAG 98
V GPE + G G RP P S G+ L G SSG PG P EAG
Sbjct: 580 VQGPEGKLGPLGAPGEDGRPGPPGSIGIRGQPGSMGLPGPKGSSGDPGKPG------EAG 633
Query: 99 CRALNVSEHARGGFALGLPFGLSGGAYLFLLLDGAGDPKPT-------PEAPISSA--DG 149
+ A G P G G L G P PT P P G
Sbjct: 634 NAGVPGQRGAPGKDGEVGPSGPVGPPGLAGERGEQGPPGPTGFQGLPGPPGPPGEGGKPG 693
Query: 150 RAWFPSESSWQLPQLPAGSTSGSEPRARPGLGPRQLPTGPRDGAAGQGPGRGLTARLGRE 209
P + P P G R PG+ LP G + A G GP
Sbjct: 694 DQGVPGDPGAVGPLGPRGERGNPGERGEPGI--TGLP-GEKGMAGGHGPD---------- 740
Query: 210 REIDCGPR-QAGHGGTATDTGRAGSGARHRPPRDRGTPG 247
GP+ G GT DTG G GTPG
Sbjct: 741 -----GPKGSPGPSGTPGDTGPPGLQGMPGERGIAGTPG 774
Score = 35.4 bits (80), Expect = 0.047
Identities = 57/230 (24%), Positives = 67/230 (29%), Gaps = 14/230 (6%)
Query: 23 RSGKDPKSSPASSPSFAVLGPEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSS 82
+ G P P +GP G G P P G P +G + S
Sbjct: 230 QGGAGPTGPPGEPGDPGPMGPI-----GSRGPEGPPGKPGEDGEPGRNGNPGEVGFAGSP 284
Query: 83 GSPGHPPGSAFGVEAGCRALNVSEHARGGFALGLP-----FGLSGGAYLFLLLDGAGDPK 137
G+ G P G R E +G +G P G +G L G P
Sbjct: 285 GARGFPGAPGLPGLKGHRGHKGLEGPKG--EVGAPGSKGEAGPTGPMGAMGPLGPRGMPG 342
Query: 138 PTPEAPISSADGRAWFPSESSWQLPQLPAGSTSGSEPRARPGLGPRQLPTGPRDGAAGQG 197
A G+ P P G S PG+ PTG R QG
Sbjct: 343 ERGRLGPQGAPGQRGAHGMPGKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQG 402
Query: 198 PGRGLTARLGREREIDCGPRQAGHGGTATDTGRAGSGARHRPPRDRGTPG 247
RG T G P G GT G GS PP G PG
Sbjct: 403 Q-RGETGPPGPVGSPGL-PGAIGTDGTPGAKGPTGSPGTSGPPGSAGPPG 450
Score = 35.4 bits (80), Expect = 0.047
Identities = 60/228 (26%), Positives = 73/228 (32%), Gaps = 39/228 (17%)
Query: 25 GKDPKSSPASSPSFAVLGPEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGS 84
GKD + P+ +GP G+ G + P Q G P G G
Sbjct: 645 GKDGEVGPSGP-----VGPP--GLAGERGEQGPPGPTGFQGLPGPPGPPGEGGKPGDQGV 697
Query: 85 PGHPPGSAFGVEAGCRALNVSEHARGGFALGLPF--GLSGGAYLFLLLDGA-GDPKPTPE 141
PG P G R N E G GLP G++GG DG G P P+
Sbjct: 698 PGDPGAVGPLGPRGERG-NPGERGEPGIT-GLPGEKGMAGGHGP----DGPKGSPGPSGT 751
Query: 142 APISSADGRAWFPSESSWQLPQLPAGSTSGSEPRARPGLGPRQLPTGPRDGAAGQGPGRG 201
+ G P E P G R G+G + +G AG RG
Sbjct: 752 PGDTGPPGLQGMPGERGIAGTPGPKGD--------RGGIGEKGA-----EGTAGNDGARG 798
Query: 202 LTARLGREREIDCGPRQAGHGGTATDTGRAGSGARHRPPRDRGTPGLR 249
L LG G G + G G PP RG PG R
Sbjct: 799 LPGPLG----------PPGPAGPTGEKGEPGPRGLVGPPGSRGNPGSR 836
Score = 34.3 bits (77), Expect = 0.11
Identities = 54/215 (25%), Positives = 65/215 (30%), Gaps = 32/215 (14%)
Query: 43 PEVRSTGGQAGSRRRPSA---------PCSQDRAAAEGAPALLGGSPSSGSPGHPPGSAF 93
P V G+AG + P P + + G P +G G G P F
Sbjct: 470 PGVPGFKGEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPVGERGAPGNRGF 529
Query: 94 GVEAGCRALNVSEHARGGFALGLPFGLSGGAYLFLLLDGAGDPKPTPEAPISSADGRAWF 153
G ++ RG P G SG GDP E + A G
Sbjct: 530 PGSDGLPGPKGAQGERG------PVGSSGPK------GSQGDPGRPGEPGLPGARGLTGN 577
Query: 154 PSESSWQLPQLPAGSTSGSEPRARPGLGPRQLPTGPRDGAAGQGPGRGLTARLGREREID 213
P Q P G P PG R P G G GQ GL G +
Sbjct: 578 PGV------QGPEGKLG---PLGAPGEDGRPGPPGSI-GIRGQPGSMGLPGPKGSSGDPG 627
Query: 214 CGPRQAGHGGTATDTGRAGSGARHRPPRDRGTPGL 248
P +AG+ G G G P G PGL
Sbjct: 628 -KPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPPGL 661
Score = 33.1 bits (74), Expect = 0.24
Identities = 61/244 (25%), Positives = 74/244 (30%), Gaps = 41/244 (16%)
Query: 17 PEPAFLRSGKDPKSSPASSPSFAVLGPEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALL 76
PE + G+ P SP P T G G++ +P + + G P
Sbjct: 397 PEGPQGQRGETGPPGPVGSPGL----PGAIGTDGTPGAKGPTGSPGTSGPPGSAGPPGSP 452
Query: 77 GGSPSSG------SPGHPPGSAFGVEAGCRALNVSEHARGGFALGLPFGLSGGAYLFLLL 130
G S+G PG P F EAG + +G P G G
Sbjct: 453 GPQGSTGPQGIRGQPGDPGVPGFKGEAGPKGEPGPHGIQGPIG---PPGEEGKR------ 503
Query: 131 DGAGDPKPT-PEAPIS--SADGRAWFPSESSWQLPQLPAGSTSGSEPRARPGLGPRQLPT 187
GDP P P+ A G FP LP + E GP+
Sbjct: 504 GPRGDPGTVGPPGPVGERGAPGNRGFPGSDG-----LPGPKGAQGERGPVGSSGPKGSQG 558
Query: 188 GP-RDGAAGQGPGRGLTARLGREREIDCGPRQAGHGGTATDTGRAGSGARHRPPRD---R 243
P R G G RGLT P G G G G R PP R
Sbjct: 559 DPGRPGEPGLPGARGLTG----------NPGVQGPEGKLGPLGAPGEDGRPGPPGSIGIR 608
Query: 244 GTPG 247
G PG
Sbjct: 609 GQPG 612
Score = 30.4 bits (67), Expect = 1.5
Identities = 58/215 (26%), Positives = 71/215 (33%), Gaps = 35/215 (16%)
Query: 50 GQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGHP-------PGSAFGVEAGCRAL 102
G G+R P AP G L G G+PG P A G G R +
Sbjct: 282 GSPGARGFPGAPGLPGLKGHRGHKGLEGPKGEVGAPGSKGEAGPTGPMGAMG-PLGPRGM 340
Query: 103 NVSEHARGGFALGLPFGLSG--GAYLFLLLDGAGDP-KPTPEAPISSADGRAWFPSESSW 159
E R G P G G GA+ G P KP P P+ G + FP
Sbjct: 341 P-GERGRLG-----PQGAPGQRGAH--------GMPGKPGPMGPLG-IPGSSGFPGNPGM 385
Query: 160 QLPQLPAGSTSGSEPRARPGL----GPRQLPTGPRD-GAAGQGPGRGLTARLGREREIDC 214
+ P G+ P+ + G GP P P G G +G T G
Sbjct: 386 KGEAGPTGARGPEGPQGQRGETGPPGPVGSPGLPGAIGTDGTPGAKGPTGSPGTSGP--- 442
Query: 215 GPRQAGHGGTATDTGRAGSGARHRPPRDRGTPGLR 249
P AG G+ G G P D G PG +
Sbjct: 443 -PGSAGPPGSPGPQGSTGPQGIRGQPGDPGVPGFK 476
Score = 28.5 bits (62), Expect = 5.8
Identities = 47/160 (29%), Positives = 52/160 (32%), Gaps = 25/160 (15%)
Query: 50 GQAGSRRRPSAPCSQDRAAAEGAPALLG--------GSPSSGSPGHPPGSAFGVEAGCRA 101
G+ G R P A G P +G G P S P PPG AG R
Sbjct: 1065 GERGDRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQRGDPGSRGPIGPPG-----RAGKRG 1119
Query: 102 LNVSEHARGGFALGLPFGLSG--GAYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSW 159
L + RG G G G F L G P P P + G A P
Sbjct: 1120 LPGPQGPRGDKGDHGDRGDRGQKGHRGFTGLQGL----PGPPGP-NGEQGSAGIPGPFG- 1173
Query: 160 QLPQLPAGSTSGSEPRARPG-LGPRQLPTGPRDGAAGQGP 198
P+ P G S PG LGP P G R GP
Sbjct: 1174 --PRGPPGPVGPSGKEGNPGPLGPIG-PPGVRGSVGEAGP 1210
Score = 28.1 bits (61), Expect = 7.6
Identities = 63/250 (25%), Positives = 74/250 (29%), Gaps = 42/250 (16%)
Query: 24 SGKDPKSSPASSPSFAVLGPEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSG 83
+G+ PA +P A GP G+ G P S R G GG G
Sbjct: 914 AGRVGPPGPAGAPGPA--GP--LGEPGKEGPPGLRGDPGSHGRVGDRGPAGPPGGPGDKG 969
Query: 84 SPGH--------PPGSAFGV-EAGCRALNVSEHARGGFALGLPFGLSGGAYLFLLLDGAG 134
PG PPG A + G + RG L P G G G
Sbjct: 970 DPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGKVGPTGATGDKG 1029
Query: 135 DP-------------KPTPEAPISS--ADGRAWFPSESSWQLPQLPAGSTSGSEPRARPG 179
P +P PE P + GR E + PAG PG
Sbjct: 1030 PPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGERGDRGDPGPAGLPGSQGAPGTPG 1089
Query: 180 LGPRQLPTGPRDGAAGQGPGRGLTARLGREREIDCGPRQAGHGGTATDTGRAGSGARHRP 239
P G G AGQ G +G P +AG G G G H
Sbjct: 1090 ------PVGA-PGDAGQRGDPGSRGPIGP-------PGRAGKRGLPGPQGPRGDKGDHGD 1135
Query: 240 PRDRGTPGLR 249
DRG G R
Sbjct: 1136 RGDRGQKGHR 1145
>gi|22027589 alpha 1 type XIII collagen isoform 9 [Homo sapiens]
Length = 688
Score = 42.4 bits (98), Expect = 4e-04
Identities = 64/233 (27%), Positives = 82/233 (35%), Gaps = 21/233 (9%)
Query: 23 RSGKDPKSSPASSPSFAVLGPEVR-STGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPS 81
R + PK+SP + A GP R GQ G+R P P G P G
Sbjct: 106 RRREAPKTSPGCNCPPAFQGPTGRPGLPGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGL 165
Query: 82 SGSPGHP-PGSAFGVEAGCRALNVSEHARGGFALGLPFGLSGGAYLFLLLDGAGDPKPTP 140
+G PG P P G + C E+ +P L + L L +
Sbjct: 166 TGPPGQPGPQGQKGEKGQC-----GEYPHRECLSSMPAALRSSQIIALKLLPLLNSVRLA 220
Query: 141 EAPISSADGRAWFPSESSWQLPQLPAGSTSGSEPRARPGL----GPRQLPTGPRDGAAGQ 196
P+ S++S Q P P G S P PGL GP LP P G G
Sbjct: 221 PPPVIKRRTFQGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPP--GPKGD 278
Query: 197 GPGRGLTARLGREREIDCGPRQAGHGGTATDTGRAGSGARHRPPRDRGTPGLR 249
+G R G ER + P G G G A +G + P G PG +
Sbjct: 279 PGIQGYHGRKG-ERGM---PGMPGKHGAKGAPGIAVAGMKGEP----GIPGTK 323
Score = 41.6 bits (96), Expect = 7e-04
Identities = 65/247 (26%), Positives = 80/247 (32%), Gaps = 28/247 (11%)
Query: 8 QPLRALDLYPEPAFLRSGKDPKSSPASSPSFAVLG-PEVRSTGGQAGSRRRPS---APCS 63
Q +R L L P L P +P +G P G+ G R +P P
Sbjct: 426 QEIRTLALMGPPG-LPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGP 484
Query: 64 QDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCRALNVSEHARGGFALGLPFGLSGG 123
Q +G P + G + GSPG +AG +G +P GL G
Sbjct: 485 QGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVP-GLPGP 543
Query: 124 AYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSWQLPQ-LPAGSTSGSEPRARPGLGP 182
G P P EA + A G F E + P LP S P GP
Sbjct: 544 EGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGP 603
Query: 183 RQLPTGPRDGAAGQGPGRGLTARLGREREIDCGPRQAGHGGTATDTGRAGSGARHRPPRD 242
+P G AG RG G G TG AG H PP D
Sbjct: 604 IGVP-----GPAGPKGERG----------------SKGDPGMTGPTGAAGLPGLHGPPGD 642
Query: 243 RGTPGLR 249
+G G R
Sbjct: 643 KGNRGER 649
Score = 28.9 bits (63), Expect = 4.4
Identities = 50/211 (23%), Positives = 64/211 (30%), Gaps = 47/211 (22%)
Query: 52 AGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCRALNVSEHARGG 111
AG + P P ++ AEG+P L G G G G++ G GG
Sbjct: 311 AGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKG-DAGNSIG---------------GG 354
Query: 112 FALGLPFGLSGGAYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSWQLPQLPAGSTSG 171
P GL G P P EA + G P + + G
Sbjct: 355 RGEPGPPGL------------PGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGP 402
Query: 172 SEPRARPGLGP---------------RQLPTGPRDGAAGQGPGRGLTARLGREREIDCGP 216
+ PG G R L G GQ G G++ EI P
Sbjct: 403 KGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGL-P 461
Query: 217 RQAGHGGTATDTGRAGSGARHRPPRDRGTPG 247
GH G G+ G PP +G PG
Sbjct: 462 GPPGHDGEKGPRGKPGDMG---PPGPQGPPG 489
>gi|4885363 goosecoid homeobox 2 [Homo sapiens]
Length = 205
Score = 42.4 bits (98), Expect = 4e-04
Identities = 39/124 (31%), Positives = 50/124 (40%), Gaps = 18/124 (14%)
Query: 132 GAGDPKPTPEAPISSADGRAWFPSESSWQLPQLPAGSTSGSEPRARPGL----------- 180
GAG P P I S+ P+ ++ P PAG S ++P PG
Sbjct: 13 GAGRPCPFSIEHILSSLPERSLPARAA--CPPQPAGRQSPAKPE-EPGAPEAAPCACCCC 69
Query: 181 -GPRQLPTGPRDGAAGQGPGRGLTARLGREREIDCGPRQAGHGGTATDTGRAGSGARHRP 239
GPR P GP + AAG G RLG + G A GG+ G G G++ R
Sbjct: 70 CGPRAAPCGPPEAAAGLGARLAWPLRLGPAVPLSLG---APAGGSGALPGAVGPGSQRRT 126
Query: 240 PRDR 243
R R
Sbjct: 127 RRHR 130
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 42.0 bits (97), Expect = 5e-04
Identities = 65/232 (28%), Positives = 71/232 (30%), Gaps = 34/232 (14%)
Query: 42 GPE-VRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCR 100
GPE + GG G P + + G P G GS G P E G R
Sbjct: 841 GPEGPKGRGGPNGDPGPLGPPGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKGGR 900
Query: 101 ALNVSEHARGGFALGLPFGLSGGAYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSWQ 160
RG P G G + G P P S DG A P E
Sbjct: 901 GTPGKPGPRGQRGPTGPRGERGPRGI------TGKPGPKGN---SGGDGPAGPPGERGPN 951
Query: 161 LPQLPAGSTSGSEPRARPGLG-----PRQL----------PTGPRDGAAGQGPGRGLTAR 205
PQ P G P PG P Q P GP QGP G T
Sbjct: 952 GPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGP-TGETGP 1010
Query: 206 LGREREIDCG--------PRQAGHGGTATDTGRAGSGARHRPPRDRGTPGLR 249
+G P AG GT D G AG + PP RG PG R
Sbjct: 1011 MGERGHPGPPGPPGEQGLPGLAGKEGTKGDPGPAGLPGKDGPPGLRGFPGDR 1062
Score = 35.8 bits (81), Expect = 0.036
Identities = 65/258 (25%), Positives = 85/258 (32%), Gaps = 21/258 (8%)
Query: 5 LEGQPLRALDLYP--EPAFLRSGKDPKSSPASSPSFAVLGPEVRSTGGQAGSRRRPSAPC 62
++GQP ++ P EP +P + P A+ P + G+ G P A
Sbjct: 701 MDGQPGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADG 760
Query: 63 SQDRAAAEGAPALLGGSPSSGSP---GHPPGSAFGVEAGCRALNVSEHARGGFALGLPFG 119
EG P GG G G+P G R L ++ +G G P G
Sbjct: 761 PPGHPGKEGPPGEKGGQGPPGPQGPIGYPGPRGVKGADGIRGLKGTKGEKG--EDGFP-G 817
Query: 120 LSGGAYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSWQLPQLPAGSTSGSEPRARPG 179
G + G P P E GR + P P G PG
Sbjct: 818 FKGDMGIKGDRGEIGPPGPRGEDGPEGPKGRGGPNGDPG---PLGPPGEKGKLGVPGLPG 874
Query: 180 LGPRQLPTGP-----RDGAAGQGPGRGLTARLG-REREIDCGPR----QAGHGGTATDTG 229
RQ P G GA G+ GRG + G R + GPR G G G
Sbjct: 875 YPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKG 934
Query: 230 RAGSGARHRPPRDRGTPG 247
+G PP +RG G
Sbjct: 935 NSGGDGPAGPPGERGPNG 952
Score = 35.8 bits (81), Expect = 0.036
Identities = 52/208 (25%), Positives = 63/208 (30%), Gaps = 29/208 (13%)
Query: 43 PEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGHP-PGSAFGV--EAGC 99
P R G AG R ++ A EG P G G+PG P P G+ G
Sbjct: 1389 PGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGE 1448
Query: 100 RALNVSEHARGGFALGLPFGLSGGAYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSW 159
+ L S G P GL G GD P E G P E
Sbjct: 1449 QGLPGSPGPDGPPGPMGPPGLPG---------LKGDSGPKGEKGHPGLIGLIGPPGEQGE 1499
Query: 160 QLPQLPAGSTSGSEPRARPGLGPRQLPTGPRDGAAGQGPGRGLTARLGREREIDCGPRQA 219
+ + G S P+ G+ P GP GP P
Sbjct: 1500 KGDRGLPGPQGSSGPKGEQGITGPSGPIGPPGPPGLPGP-----------------PGPK 1542
Query: 220 GHGGTATDTGRAGSGARHRPPRDRGTPG 247
G G++ TG G PP G PG
Sbjct: 1543 GAKGSSGPTGPKGEAGHPGPPGPPGPPG 1570
Score = 35.0 bits (79), Expect = 0.062
Identities = 63/252 (25%), Positives = 75/252 (29%), Gaps = 26/252 (10%)
Query: 17 PEPAFLRSGKDPKSSPASSPSFAVLGPEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALL 76
P P L+ P + +GP G G P A Q G P +
Sbjct: 1224 PGPVGLQGLPGPPGEKGETGDVGQMGPP--GPPGPRGPSGAPGADGPQGPPGGIGNPGAV 1281
Query: 77 G--------GSPSSGSPGHPPGSAFGVEAGCRALNVSEHARGGFALGLPFGLSGGAYLFL 128
G G P G PPG E G + + A G P G G
Sbjct: 1282 GEKGEPGEAGEPGLPGEGGPPGPKG--ERGEKGESGPSGAAGPPGPKGPPGDDGPKGSPG 1339
Query: 129 LLDGAGDPKPTPEAPISSADGRAWFPSESSWQLPQLPAGSTSGSEPRARPGLGPRQLPTG 188
+ GDP P E + DG + G T P PG P G
Sbjct: 1340 PVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPGPAG 1399
Query: 189 P--RDGAAGQGPGRGLTARLGREREIDCGPRQA----------GHGGTATDTGRAGSGAR 236
P R G G GL G+ I GP+ A G G + G GS
Sbjct: 1400 PEGRQGEKGAKGEAGLEGPPGKTGPI--GPQGAPGKPGPDGLRGIPGPVGEQGLPGSPGP 1457
Query: 237 HRPPRDRGTPGL 248
PP G PGL
Sbjct: 1458 DGPPGPMGPPGL 1469
Score = 34.3 bits (77), Expect = 0.11
Identities = 62/212 (29%), Positives = 70/212 (33%), Gaps = 43/212 (20%)
Query: 46 RSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCRALNVS 105
R G+ G R P P G LLG G PG P + + G + NV
Sbjct: 663 RGDDGEVGPRGLPGEP---------GPRGLLGPKGPPGPPGPPGVTGMDGQPGPKG-NVG 712
Query: 106 EHARGG--------FALGLPFGLSGGAYLFLLLDGAGDPKPTPEAP-ISSADGRAWFPSE 156
G A GLP G + G P P P + ADG P +
Sbjct: 713 PQGEPGPPGQQGNPGAQGLP-----GPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGK 767
Query: 157 SSWQLPQLPAGSTSGSEPRARPG-LGPRQLPTGPRDGAAGQGPGRGLTARLGREREIDCG 215
P G G P PG GP P GPR G G RGL G + E D
Sbjct: 768 EG------PPGEKGGQGP---PGPQGPIGYP-GPR-GVKGADGIRGLKGTKGEKGE-DGF 815
Query: 216 PRQAGHGGTATDTGRAGSGARHRPPRDRGTPG 247
P G G D G G PP RG G
Sbjct: 816 PGFKGDMGIKGDRGEIG------PPGPRGEDG 841
Score = 32.0 bits (71), Expect = 0.52
Identities = 67/243 (27%), Positives = 80/243 (32%), Gaps = 16/243 (6%)
Query: 17 PEPAFLRSGKDPKSSPASSPSFAVLGPEVRSTG--GQAGSRRRPSAPCSQDRAAAEGAPA 74
P PA L GKD P L V + G G G P S GA
Sbjct: 1041 PGPAGL-PGKDGPPGLRGFPGDRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGPAGAAG 1099
Query: 75 LLGGSPSSGSPGHPPGSAFGVEAGCRALNVSEHARGGFALGLPFGLSGGAYLFLLLDGAG 134
+G P P PPG A E G + G L P GL G A G
Sbjct: 1100 PIG-IPGRPGPQGPPGPAG--EKGAPGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDG 1156
Query: 135 DPKPTPEAPISSADGRAWFPSESSWQLPQLPAGST--SGSE----PRARPGLGPRQLPTG 188
D E + G PQ P G SG++ PR + GL ++ G
Sbjct: 1157 DKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQQGLFGQKGDEG 1216
Query: 189 PRDGAAGQGPG--RGLTARLGREREI-DCGPR-QAGHGGTATDTGRAGSGARHRPPRDRG 244
PR GP +GL G + E D G G G +G G+ PP G
Sbjct: 1217 PRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGAPGADGPQGPPGGIG 1276
Query: 245 TPG 247
PG
Sbjct: 1277 NPG 1279
Score = 30.8 bits (68), Expect = 1.2
Identities = 53/209 (25%), Positives = 67/209 (32%), Gaps = 36/209 (17%)
Query: 50 GQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCRALNVSEHAR 109
G G R P P G P G + G G PPG G R + + A
Sbjct: 1213 GDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMG-PPGPP-----GPRGPSGAPGAD 1266
Query: 110 GGFALGLPFGLSGGAYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSWQLPQLPAGST 169
G P G GG + G+P E + G E + P+G+
Sbjct: 1267 G------PQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPSGAA 1320
Query: 170 SGSEPRARPG-------LGPRQLPTGP----RDGAAGQGPGRGLTARLGREREIDCGPRQ 218
P+ PG GP P P G AGQ G ++ D P Q
Sbjct: 1321 GPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPG-------DKGDDGEPGQ 1373
Query: 219 AGHGGTATDTGRAGSGARHRPPRDRGTPG 247
G G + G +G PP RG PG
Sbjct: 1374 TGSPGPTGEPGPSG------PPGKRGPPG 1396
>gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens]
Length = 1142
Score = 42.0 bits (97), Expect = 5e-04
Identities = 51/198 (25%), Positives = 68/198 (34%), Gaps = 6/198 (3%)
Query: 50 GQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCRALNVSEHAR 109
G+AG P AP S + +G P G + G PG F G + +
Sbjct: 292 GEAGL---PGAPGSPGQKGHKGEPGENGLHGAPGFPGQKGEQGFEGSKGETGEKGEQGEK 348
Query: 110 GGFALGLPFGLSGGAYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSWQLPQLPAGST 169
G AL GL+G L L G P P E + G P Q PQ P G
Sbjct: 349 GDPALA---GLNGENGLKGDLGPHGPPGPKGEKGDTGPPGPPALPGSLGIQGPQGPPGKE 405
Query: 170 SGSEPRARPGLGPRQLPTGPRDGAAGQGPGRGLTARLGREREIDCGPRQAGHGGTATDTG 229
R + G + P GP QG + L ++ + + G G +TG
Sbjct: 406 GQRGRRGKTGPPGKPGPPGPPGPPGIQGIHQTLGGYYNKDNKGNDEHEAGGLKGDKGETG 465
Query: 230 RAGSGARHRPPRDRGTPG 247
G P +G PG
Sbjct: 466 LPGFPGSVGPKGQKGEPG 483
Score = 36.6 bits (83), Expect = 0.021
Identities = 54/204 (26%), Positives = 69/204 (33%), Gaps = 18/204 (8%)
Query: 50 GQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCRALNVSEHAR 109
G G + P P ++ G P ++G G PG P G + S +
Sbjct: 474 GPKGQKGEPGEPFTKGEKGDRGEPGVIGSQGVKGEPGDPGPPGLIGSPGLKGQQGSAGSM 533
Query: 110 GGFA----LGLPFGLSGGAYLFLLLDGAGDPKPTPEAP-ISSADGRAWFPSESSWQLPQL 164
G +GLP G G + GDP P + G A P +S LP
Sbjct: 534 GPRGPPGDVGLP-GEHGIPGKQGIKGEKGDPGGIIGPPGLPGPKGEAGPPGKS---LPGE 589
Query: 165 PAGSTSGSEPRARPGLGPRQLPTGPRDGAAGQGP-GRGLTARLGREREIDCGPRQAGHGG 223
P + P R G R LP G GP G G+ R G + GP AG G
Sbjct: 590 PGLDGNPGAPGPRGPKGERGLP-GVHGSPGDIGPQGIGIPGRTGAQ-----GP--AGEPG 641
Query: 224 TATDTGRAGSGARHRPPRDRGTPG 247
G G P + G PG
Sbjct: 642 IQGPRGLPGLPGTPGTPGNDGVPG 665
Score = 35.4 bits (80), Expect = 0.047
Identities = 53/224 (23%), Positives = 69/224 (30%), Gaps = 27/224 (12%)
Query: 50 GQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCRALNVSEHAR 109
G G R P P + +G P + G +G PG + G + S+
Sbjct: 747 GSKGERGYPGIPGEKGDEGLQGIPGIPGAPGPTGPPGLMGRTGHPGPTGAKGEKGSDGPP 806
Query: 110 G----GFALGLPFGLSGGAYLFLLLDGA----------------GDPKPTPEAPISSADG 149
G G+PF G + G GDP P E G
Sbjct: 807 GKPGPPGPPGIPFNERNGMSSLYKIKGGVNVPSYPGPPGPPGPKGDPGPVGEPGAMGLPG 866
Query: 150 RAWFPSESSWQLPQLPAGSTSGSEPRARPGLGPRQLPTGPRD----GAAGQGPGRGLTAR 205
FP + P P G S P GP +P P + G G G + +
Sbjct: 867 LEGFPGVKGDRGPAGPPGIAGMSGKPGAP--GPPGVPGEPGERGPVGDIGFPGPEGPSGK 924
Query: 206 LGREREIDCGPRQAGHGGTATDTGRAGSGARHRPPRDRGTPGLR 249
G + D P G G D G G P DRG+ G R
Sbjct: 925 PGINGK-DGIPGAQGIMGKPGDRGPKGERGDQGIPGDRGSQGER 967
Score = 32.3 bits (72), Expect = 0.40
Identities = 63/265 (23%), Positives = 85/265 (32%), Gaps = 48/265 (18%)
Query: 2 GRPLEGQPLRALDLYPEPAFLRSGKDPKSSPASSPSFAVLGPEVRSTGGQAGSRRRPSAP 61
G+ L G+P LD P R K + P S +GP+ G+ G++ P
Sbjct: 583 GKSLPGEP--GLDGNPGAPGPRGPKGERGLPGVHGSPGDIGPQGIGIPGRTGAQGPAGEP 640
Query: 62 CSQDRAAAEGAPALLGGSPSSGSPGH--------PPGSAFGV----EAGCRALNVSEHAR 109
Q G P G + G PG PPG + + G N + +
Sbjct: 641 GIQGPRGLPGLPGTPGTPGNDGVPGRDGKPGLPGPPGDPIALPLLGDIGALLKNFCGNCQ 700
Query: 110 GGF-ALGLPFGLSGGA-----YLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSWQLPQ 163
L G GGA Y + G P+ P P +G E + P
Sbjct: 701 ASVPGLKSNKGEEGGAGEPGKYDSMARKGDIGPRGPPGIP--GREGPKGSKGERGY--PG 756
Query: 164 LPAGSTSGSEPRARPGLGPRQLPTGPRDGAAGQGPGRGLTARLGREREIDCGPRQAGHGG 223
+P G + PG+ PTGP PG +GR GH G
Sbjct: 757 IP-GEKGDEGLQGIPGIPGAPGPTGP--------PG-----LMGR----------TGHPG 792
Query: 224 TATDTGRAGSGARHRPPRDRGTPGL 248
G GS P G PG+
Sbjct: 793 PTGAKGEKGSDGPPGKPGPPGPPGI 817
>gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens]
Length = 1714
Score = 42.0 bits (97), Expect = 5e-04
Identities = 63/234 (26%), Positives = 80/234 (34%), Gaps = 16/234 (6%)
Query: 17 PEPAFLRSGKDPKSSPASSPSFAVLGPE-VRSTGGQAGSRRRPSAPCSQDRAAAEGAPAL 75
P P+ L K K P + VLGP R G G + P ++ G P L
Sbjct: 1178 PGPSGLPGPKGEKGYPGEDST--VLGPPGPRGEPGPVGDQGERGEPGAEGYKGHVGVPGL 1235
Query: 76 LGGSPSSGSPGHPPGSAFGVEAGCRALNVSEHARGGFALGLPFGLSGGAYLFLLLDGAGD 135
G + G PG P E G + SE +G P G G L LL G
Sbjct: 1236 RGATGQQGPPGEPGDQG---EQGLKGERGSEGNKGKKGAPGPSGKPGIPGLQGLLGPKGI 1292
Query: 136 PKPTPEAPISSADGRAWFPSESSWQLPQLPAGSTSGSEPRARPGL-GPRQLPTGPRDGAA 194
IS G+ P + + G T + PG+ G LP P G
Sbjct: 1293 QGYHGADGISGNPGKIGPPGKQGLPGIRGGPGRTGLAGAPGPPGVKGSSGLPGSP--GIQ 1350
Query: 195 GQGPGRGLTARLGREREIDCGPRQAGHGGTATDTGRAGSGARHRPPRDRGTPGL 248
G +GL + G + G R GH G D G G P + G GL
Sbjct: 1351 GPKGEQGLPGQPGIQ-----GKR--GHRGAQGDQGPCGDPGLKGQPGEYGVQGL 1397
Score = 37.4 bits (85), Expect = 0.012
Identities = 66/236 (27%), Positives = 79/236 (33%), Gaps = 62/236 (26%)
Query: 50 GQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGH--PPGSAFGVEAGCRALNVSEH 107
G G +P P Q +G G SG+PG PPG
Sbjct: 1270 GAPGPSGKPGIPGLQGLLGPKGIQGYHGADGISGNPGKIGPPGKQ--------------- 1314
Query: 108 ARGGFALGLPFGLSGGAYLFLLLDGAGDP-----KPTPEAP-ISSADGRAWFPSESSWQL 161
GLP G+ GG L G P P +P I G P + Q
Sbjct: 1315 -------GLP-GIRGGPGRTGLAGAPGPPGVKGSSGLPGSPGIQGPKGEQGLPGQPGIQG 1366
Query: 162 PQLPAGSTSGSEPRARPGL-------GPRQL--------PTGPRDGAAG-------QGP- 198
+ G+ P PGL G + L P GP +G AG +GP
Sbjct: 1367 KRGHRGAQGDQGPCGDPGLKGQPGEYGVQGLTGFQGFPGPKGP-EGDAGIVGISGPKGPI 1425
Query: 199 -GRGLTARLGREREID----CGPRQAGHGGTATDTGRAGSGARHRPPRDRGTPGLR 249
RG T LGRE I GPR G G +TG G + PP G PG R
Sbjct: 1426 GHRGNTGPLGREGIIGPTGRTGPR--GEKGFRGETGPQGPRGQPGPPGPPGAPGPR 1479
Score = 34.3 bits (77), Expect = 0.11
Identities = 56/213 (26%), Positives = 72/213 (33%), Gaps = 33/213 (15%)
Query: 43 PEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCRAL 102
P +R G G + P + A +G+P L+GG +G PG P G R
Sbjct: 638 PGIRGKKGFKGRQGFPGDFGDRGPAGLDGSPGLVGG---TGPPGFP---------GLRGS 685
Query: 103 NVSEHARGGFALGLPFGLSGGAYLFLLLDGAGDPKPTPEAPISSADGRAWFPSE-SSWQL 161
G + P GLSG L + G+ E G +P + + L
Sbjct: 686 VGPVGPIGPAGIPGPMGLSGNKGLPGIKGDKGEQGTAGEL------GEPGYPGDKGAVGL 739
Query: 162 PQLPA--GSTSGSEPRARPGLGPRQLPTGPRD-----GAAGQGPGRGLTARLGREREIDC 214
P P G + S PGL P GP G GQ G LG
Sbjct: 740 PGPPGMRGKSGPSGQTGDPGLQGPSGPPGPEGFPGDIGIPGQNGPEGPKGLLGNRGP--- 796
Query: 215 GPRQAGHGGTATDTGRAGSGARHRPPRDRGTPG 247
P G GT + G G+ P RG PG
Sbjct: 797 -PGPPGLKGTQGEEGPIGAFGELGP---RGKPG 825
Score = 33.5 bits (75), Expect = 0.18
Identities = 66/233 (28%), Positives = 76/233 (32%), Gaps = 41/233 (17%)
Query: 25 GKDPKSSPASSPSFAVLGPEVRSTG--GQAGSRRRPSAPCSQDRAAA---EGAPALLGGS 79
GK ++ P P EV TG G+ G R P Q G P + G
Sbjct: 849 GKIGETGPVGLPG------EVGMTGSIGEKGERGSPGPLGPQGEKGVMGYPGPPGVPGPI 902
Query: 80 PSSGSPGHPPGSAFGVEAGCRALNVSEHARGGFALGLPFGLSGGAYLFLLLDGAGDP-KP 138
G PGH G R S+ +G P GL G + GD K
Sbjct: 903 GPLGLPGH---------VGARGPPGSQGPKGQRGSRGPDGLLGEQGIQGAKGEKGDQGKR 953
Query: 139 TPEAPISSADGRAWFPSESSWQ----LPQLPAGSTSGSEPRARPGLGPRQLPTGPRDGAA 194
P I G+ P E +Q L LP GST PGL Q GP
Sbjct: 954 GPHGLI----GKTGNPGERGFQGKPGLQGLP-GSTGDRGLPGEPGLRGLQGDVGPPGEMG 1008
Query: 195 GQGPGRGLTARLGREREIDCGPRQAGHGGTATDTGRAGSGARHRPPRDRGTPG 247
+GP G E E G G D G AGS P RG PG
Sbjct: 1009 MEGPP-------GTEGESGL----QGEPGAKGDVGTAGSVGGTGEPGLRGEPG 1050
Score = 30.0 bits (66), Expect = 2.0
Identities = 52/206 (25%), Positives = 63/206 (30%), Gaps = 47/206 (22%)
Query: 43 PEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCRAL 102
P + G AG+ P P Q A EG P G GSPG E G +
Sbjct: 581 PGEQGIPGFAGNIGSPGYPGRQGLAGPEGNPGPKGAQGFIGSPGEAGQLGPEGERGIPGI 640
Query: 103 NVSEHARGGFALGLPFGLSGGAYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSWQLP 162
+ +G FG G A LDG+
Sbjct: 641 RGKKGFKGRQGFPGDFGDRGPAG----LDGS----------------------------- 667
Query: 163 QLPAGSTSGSEPRARPGLGPRQLPTGPRDGAAGQGPGRGLTARLGREREIDCGPRQAGHG 222
G G+ P PGL P GP A GP GL+ G + G
Sbjct: 668 ---PGLVGGTGPPGFPGLRGSVGPVGPIGPAGIPGP-MGLSGNKG----LPGIKGDKGEQ 719
Query: 223 GTATDTGRAGSGARHRPPRDRGTPGL 248
GTA + G G P D+G GL
Sbjct: 720 GTAGELGEPGY------PGDKGAVGL 739
>gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens]
Length = 717
Score = 41.6 bits (96), Expect = 7e-04
Identities = 65/247 (26%), Positives = 80/247 (32%), Gaps = 28/247 (11%)
Query: 8 QPLRALDLYPEPAFLRSGKDPKSSPASSPSFAVLG-PEVRSTGGQAGSRRRPS---APCS 63
Q +R L L P L P +P +G P G+ G R +P P
Sbjct: 455 QEIRTLALMGPPG-LPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGP 513
Query: 64 QDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCRALNVSEHARGGFALGLPFGLSGG 123
Q +G P + G + GSPG +AG +G +P GL G
Sbjct: 514 QGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVP-GLPGP 572
Query: 124 AYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSWQLPQ-LPAGSTSGSEPRARPGLGP 182
G P P EA + A G F E + P LP S P GP
Sbjct: 573 EGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGP 632
Query: 183 RQLPTGPRDGAAGQGPGRGLTARLGREREIDCGPRQAGHGGTATDTGRAGSGARHRPPRD 242
+P G AG RG G G TG AG H PP D
Sbjct: 633 IGVP-----GPAGPKGERG----------------SKGDPGMTGPTGAAGLPGLHGPPGD 671
Query: 243 RGTPGLR 249
+G G R
Sbjct: 672 KGNRGER 678
Score = 38.9 bits (89), Expect = 0.004
Identities = 58/216 (26%), Positives = 76/216 (35%), Gaps = 22/216 (10%)
Query: 39 AVLGPEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGHP-PGSAFGVEA 97
+++GP R GQ G+R P P G P G +G PG P P G +
Sbjct: 154 SIIGP--RGPPGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLTGPPGQPGPQGQKGEKG 211
Query: 98 GCRALNVSEHARGGFALGLPFGLSGGAYLFLLLDGAGDPKPTPEAPISSADGRAWFPSES 157
C E+ +P L + L L + P+ S++
Sbjct: 212 QC-----GEYPHRECLSSMPAALRSSQIIALKLLPLLNSVRLAPPPVIKRRTFQGEQSQA 266
Query: 158 SWQLPQLPAGSTSGSEPRARPGL----GPRQLPTGPRDGAAGQGPGRGLTARLGREREID 213
S Q P P G S P PGL GP LP P G G +G R G ER +
Sbjct: 267 SIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPP--GPKGDPGIQGYHGRKG-ERGM- 322
Query: 214 CGPRQAGHGGTATDTGRAGSGARHRPPRDRGTPGLR 249
P G G G A +G + P G PG +
Sbjct: 323 --PGMPGKHGAKGAPGIAVAGMKGEP----GIPGTK 352
Score = 28.9 bits (63), Expect = 4.4
Identities = 50/211 (23%), Positives = 64/211 (30%), Gaps = 47/211 (22%)
Query: 52 AGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCRALNVSEHARGG 111
AG + P P ++ AEG+P L G G G G++ G GG
Sbjct: 340 AGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKG-DAGNSIG---------------GG 383
Query: 112 FALGLPFGLSGGAYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSWQLPQLPAGSTSG 171
P GL G P P EA + G P + + G
Sbjct: 384 RGEPGPPGL------------PGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGP 431
Query: 172 SEPRARPGLGP---------------RQLPTGPRDGAAGQGPGRGLTARLGREREIDCGP 216
+ PG G R L G GQ G G++ EI P
Sbjct: 432 KGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGL-P 490
Query: 217 RQAGHGGTATDTGRAGSGARHRPPRDRGTPG 247
GH G G+ G PP +G PG
Sbjct: 491 GPPGHDGEKGPRGKPGDMG---PPGPQGPPG 518
>gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens]
Length = 655
Score = 41.6 bits (96), Expect = 7e-04
Identities = 65/247 (26%), Positives = 80/247 (32%), Gaps = 28/247 (11%)
Query: 8 QPLRALDLYPEPAFLRSGKDPKSSPASSPSFAVLG-PEVRSTGGQAGSRRRPS---APCS 63
Q +R L L P L P +P +G P G+ G R +P P
Sbjct: 393 QEIRTLALMGPPG-LPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGP 451
Query: 64 QDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCRALNVSEHARGGFALGLPFGLSGG 123
Q +G P + G + GSPG +AG +G +P GL G
Sbjct: 452 QGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVP-GLPGP 510
Query: 124 AYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSWQLPQ-LPAGSTSGSEPRARPGLGP 182
G P P EA + A G F E + P LP S P GP
Sbjct: 511 EGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGP 570
Query: 183 RQLPTGPRDGAAGQGPGRGLTARLGREREIDCGPRQAGHGGTATDTGRAGSGARHRPPRD 242
+P G AG RG G G TG AG H PP D
Sbjct: 571 IGVP-----GPAGPKGERG----------------SKGDPGMTGPTGAAGLPGLHGPPGD 609
Query: 243 RGTPGLR 249
+G G R
Sbjct: 610 KGNRGER 616
Score = 33.5 bits (75), Expect = 0.18
Identities = 59/241 (24%), Positives = 76/241 (31%), Gaps = 53/241 (21%)
Query: 28 PKSSPASSPSFAVLGPEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGH 87
P+ SP + +++GP R GQ G+R P P G P G +G PG
Sbjct: 123 PQGSPGDA-GLSIIGP--RGPPGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLTGPPGQ 179
Query: 88 P-PGSAFGVEAGCRALNVSEHARGGFALGLPFGLSGGAYLFLLLDGAGDP-KPTPEAPIS 145
P P G + C G P G P P P P+
Sbjct: 180 PGPQGQKGEKGQCGEYPHRGEQSQASIQGPP----------------GPPGPPGPSGPL- 222
Query: 146 SADGRAWFPSESSWQLPQLPAGSTSGSEPRARPGL-------GPRQLPTGPRDGAAGQGP 198
G P P P G P+ PG+ G R +P P A P
Sbjct: 223 ---GHPGLPG------PMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAP 273
Query: 199 GRGLTARLGR--------EREIDCGPRQAGHGGTATDTGRAGS---GARHRPPRDRGTPG 247
G + G E+ + P G G + G AG+ G R P G PG
Sbjct: 274 GIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEP----GPPG 329
Query: 248 L 248
L
Sbjct: 330 L 330
Score = 28.9 bits (63), Expect = 4.4
Identities = 50/211 (23%), Positives = 64/211 (30%), Gaps = 47/211 (22%)
Query: 52 AGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCRALNVSEHARGG 111
AG + P P ++ AEG+P L G G G G++ G GG
Sbjct: 278 AGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKG-DAGNSIG---------------GG 321
Query: 112 FALGLPFGLSGGAYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSWQLPQLPAGSTSG 171
P GL G P P EA + G P + + G
Sbjct: 322 RGEPGPPGL------------PGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGP 369
Query: 172 SEPRARPGLGP---------------RQLPTGPRDGAAGQGPGRGLTARLGREREIDCGP 216
+ PG G R L G GQ G G++ EI P
Sbjct: 370 KGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGL-P 428
Query: 217 RQAGHGGTATDTGRAGSGARHRPPRDRGTPG 247
GH G G+ G PP +G PG
Sbjct: 429 GPPGHDGEKGPRGKPGDMG---PPGPQGPPG 456
>gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens]
Length = 657
Score = 41.6 bits (96), Expect = 7e-04
Identities = 65/247 (26%), Positives = 80/247 (32%), Gaps = 28/247 (11%)
Query: 8 QPLRALDLYPEPAFLRSGKDPKSSPASSPSFAVLG-PEVRSTGGQAGSRRRPS---APCS 63
Q +R L L P L P +P +G P G+ G R +P P
Sbjct: 395 QEIRTLALMGPPG-LPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGP 453
Query: 64 QDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCRALNVSEHARGGFALGLPFGLSGG 123
Q +G P + G + GSPG +AG +G +P GL G
Sbjct: 454 QGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVP-GLPGP 512
Query: 124 AYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSWQLPQ-LPAGSTSGSEPRARPGLGP 182
G P P EA + A G F E + P LP S P GP
Sbjct: 513 EGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGP 572
Query: 183 RQLPTGPRDGAAGQGPGRGLTARLGREREIDCGPRQAGHGGTATDTGRAGSGARHRPPRD 242
+P G AG RG G G TG AG H PP D
Sbjct: 573 IGVP-----GPAGPKGERG----------------SKGDPGMTGPTGAAGLPGLHGPPGD 611
Query: 243 RGTPGLR 249
+G G R
Sbjct: 612 KGNRGER 618
Score = 32.0 bits (71), Expect = 0.52
Identities = 61/252 (24%), Positives = 80/252 (31%), Gaps = 51/252 (20%)
Query: 23 RSGKDPKSSPASS--PSFAVLGPEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSP 80
R + PK+SP + P F GQ G+R P P G P G
Sbjct: 106 RRREAPKTSPGCNCPPVFQ----------GQPGTRGFPGFPGPIGLDGKPGHPGPKGDMG 155
Query: 81 SSGSPGHP-PGSAFGVEAGCRALNVSEHARGGFALGLPFGLSGGAYLFLLLDGA-----G 134
+G PG P P G + C E+ +P L + L + + G
Sbjct: 156 LTGPPGQPGPQGQKGEKGQC-----GEYPHRECLSSMPAALRSSQIIALKGEQSQASIQG 210
Query: 135 DPKPTPEAPISSADGRAWFPSESSWQLPQLPAGSTSGSEPRARPGL-------GPRQLPT 187
P P S G P P P G P+ PG+ G R +P
Sbjct: 211 PPGPPGPPGPSGPLGHPGLPG------PMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPG 264
Query: 188 GPRDGAAGQGPGRGLTARLGR--------EREIDCGPRQAGHGGTATDTGRAGS---GAR 236
P A PG + G E+ + P G G + G AG+ G R
Sbjct: 265 MPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGR 324
Query: 237 HRPPRDRGTPGL 248
P G PGL
Sbjct: 325 GEP----GPPGL 332
Score = 28.9 bits (63), Expect = 4.4
Identities = 50/211 (23%), Positives = 64/211 (30%), Gaps = 47/211 (22%)
Query: 52 AGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCRALNVSEHARGG 111
AG + P P ++ AEG+P L G G G G++ G GG
Sbjct: 280 AGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKG-DAGNSIG---------------GG 323
Query: 112 FALGLPFGLSGGAYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSWQLPQLPAGSTSG 171
P GL G P P EA + G P + + G
Sbjct: 324 RGEPGPPGL------------PGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGP 371
Query: 172 SEPRARPGLGP---------------RQLPTGPRDGAAGQGPGRGLTARLGREREIDCGP 216
+ PG G R L G GQ G G++ EI P
Sbjct: 372 KGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGL-P 430
Query: 217 RQAGHGGTATDTGRAGSGARHRPPRDRGTPG 247
GH G G+ G PP +G PG
Sbjct: 431 GPPGHDGEKGPRGKPGDMG---PPGPQGPPG 458
>gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens]
Length = 660
Score = 41.6 bits (96), Expect = 7e-04
Identities = 65/247 (26%), Positives = 80/247 (32%), Gaps = 28/247 (11%)
Query: 8 QPLRALDLYPEPAFLRSGKDPKSSPASSPSFAVLG-PEVRSTGGQAGSRRRPS---APCS 63
Q +R L L P L P +P +G P G+ G R +P P
Sbjct: 398 QEIRTLALMGPPG-LPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGP 456
Query: 64 QDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCRALNVSEHARGGFALGLPFGLSGG 123
Q +G P + G + GSPG +AG +G +P GL G
Sbjct: 457 QGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVP-GLPGP 515
Query: 124 AYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSWQLPQ-LPAGSTSGSEPRARPGLGP 182
G P P EA + A G F E + P LP S P GP
Sbjct: 516 EGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGP 575
Query: 183 RQLPTGPRDGAAGQGPGRGLTARLGREREIDCGPRQAGHGGTATDTGRAGSGARHRPPRD 242
+P G AG RG G G TG AG H PP D
Sbjct: 576 IGVP-----GPAGPKGERG----------------SKGDPGMTGPTGAAGLPGLHGPPGD 614
Query: 243 RGTPGLR 249
+G G R
Sbjct: 615 KGNRGER 621
Score = 32.0 bits (71), Expect = 0.52
Identities = 62/234 (26%), Positives = 77/234 (32%), Gaps = 51/234 (21%)
Query: 23 RSGKDPKSSPASS--PSFAVLGPEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSP 80
R + PK+SP + P F GQ G+R P P G P G
Sbjct: 106 RRREAPKTSPGCNCPPVFQ----------GQPGTRGFPGFPGPIGLDGKPGHPGPKGDMG 155
Query: 81 SSGSPGHP-PGSAFGVEAGCRALNVSEHARGGFALGLPFGLSGGAYLFLLLDGAGDPKPT 139
+G PG P P G + C G Y LL +
Sbjct: 156 LTGPPGQPGPQGQKGEKGQC-----------------------GEYPHRLLPLLNSVRLA 192
Query: 140 PEAPISSADGRAWFPSESSWQLPQLPAGSTSGSEPRARPGL----GPRQLPTGPRDGAAG 195
P P+ S++S Q P P G S P PGL GP LP P G G
Sbjct: 193 P-PPVIKRRTFQGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPP--GPKG 249
Query: 196 QGPGRGLTARLGREREIDCGPRQAGHGGTATDTGRAGSGARHRPPRDRGTPGLR 249
+G R G ER + P G G G A +G + P G PG +
Sbjct: 250 DPGIQGYHGRKG-ERGM---PGMPGKHGAKGAPGIAVAGMKGEP----GIPGTK 295
Score = 28.9 bits (63), Expect = 4.4
Identities = 50/211 (23%), Positives = 64/211 (30%), Gaps = 47/211 (22%)
Query: 52 AGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCRALNVSEHARGG 111
AG + P P ++ AEG+P L G G G G++ G GG
Sbjct: 283 AGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKG-DAGNSIG---------------GG 326
Query: 112 FALGLPFGLSGGAYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSWQLPQLPAGSTSG 171
P GL G P P EA + G P + + G
Sbjct: 327 RGEPGPPGL------------PGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGP 374
Query: 172 SEPRARPGLGP---------------RQLPTGPRDGAAGQGPGRGLTARLGREREIDCGP 216
+ PG G R L G GQ G G++ EI P
Sbjct: 375 KGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGL-P 433
Query: 217 RQAGHGGTATDTGRAGSGARHRPPRDRGTPG 247
GH G G+ G PP +G PG
Sbjct: 434 GPPGHDGEKGPRGKPGDMG---PPGPQGPPG 461
>gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens]
Length = 664
Score = 41.6 bits (96), Expect = 7e-04
Identities = 65/247 (26%), Positives = 80/247 (32%), Gaps = 28/247 (11%)
Query: 8 QPLRALDLYPEPAFLRSGKDPKSSPASSPSFAVLG-PEVRSTGGQAGSRRRPS---APCS 63
Q +R L L P L P +P +G P G+ G R +P P
Sbjct: 402 QEIRTLALMGPPG-LPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGP 460
Query: 64 QDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCRALNVSEHARGGFALGLPFGLSGG 123
Q +G P + G + GSPG +AG +G +P GL G
Sbjct: 461 QGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVP-GLPGP 519
Query: 124 AYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSWQLPQ-LPAGSTSGSEPRARPGLGP 182
G P P EA + A G F E + P LP S P GP
Sbjct: 520 EGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGP 579
Query: 183 RQLPTGPRDGAAGQGPGRGLTARLGREREIDCGPRQAGHGGTATDTGRAGSGARHRPPRD 242
+P G AG RG G G TG AG H PP D
Sbjct: 580 IGVP-----GPAGPKGERG----------------SKGDPGMTGPTGAAGLPGLHGPPGD 618
Query: 243 RGTPGLR 249
+G G R
Sbjct: 619 KGNRGER 625
Score = 30.8 bits (68), Expect = 1.2
Identities = 60/251 (23%), Positives = 77/251 (30%), Gaps = 53/251 (21%)
Query: 19 PAFLR-SGKDPKSSPASSPSFAVLGPEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLG 77
PAF +G+ +++GP R GQ G+R P P G P G
Sbjct: 121 PAFQGPTGRPGLPGSPGDAGLSIIGP--RGPPGQPGTRGFPGFPGPIGLDGKPGHPGPKG 178
Query: 78 GSPSSGSPGHP-PGSAFGVEAGCRALNVSEHARGGFALGLPFGLSGGAYLFLLLDGAGDP 136
+G PG P P G + C G P G P
Sbjct: 179 DMGLTGPPGQPGPQGQKGEKGQCGEYPHRGEQSQASIQGPP----------------GPP 222
Query: 137 -KPTPEAPISSADGRAWFPSESSWQLPQLPAGSTSGSEPRARPGL-------GPRQLPTG 188
P P P+ G P P P G P+ PG+ G R +P
Sbjct: 223 GPPGPSGPL----GHPGLPG------PMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGM 272
Query: 189 PRDGAAGQGPGRGLTARLGR--------EREIDCGPRQAGHGGTATDTGRAGS---GARH 237
P A PG + G E+ + P G G + G AG+ G R
Sbjct: 273 PGKHGAKGAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRG 332
Query: 238 RPPRDRGTPGL 248
P G PGL
Sbjct: 333 EP----GPPGL 339
Score = 28.9 bits (63), Expect = 4.4
Identities = 50/211 (23%), Positives = 64/211 (30%), Gaps = 47/211 (22%)
Query: 52 AGSRRRPSAPCSQDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCRALNVSEHARGG 111
AG + P P ++ AEG+P L G G G G++ G GG
Sbjct: 287 AGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKG-DAGNSIG---------------GG 330
Query: 112 FALGLPFGLSGGAYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSWQLPQLPAGSTSG 171
P GL G P P EA + G P + + G
Sbjct: 331 RGEPGPPGL------------PGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGP 378
Query: 172 SEPRARPGLGP---------------RQLPTGPRDGAAGQGPGRGLTARLGREREIDCGP 216
+ PG G R L G GQ G G++ EI P
Sbjct: 379 KGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGL-P 437
Query: 217 RQAGHGGTATDTGRAGSGARHRPPRDRGTPG 247
GH G G+ G PP +G PG
Sbjct: 438 GPPGHDGEKGPRGKPGDMG---PPGPQGPPG 465
>gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens]
Length = 676
Score = 41.6 bits (96), Expect = 7e-04
Identities = 65/247 (26%), Positives = 80/247 (32%), Gaps = 28/247 (11%)
Query: 8 QPLRALDLYPEPAFLRSGKDPKSSPASSPSFAVLG-PEVRSTGGQAGSRRRPS---APCS 63
Q +R L L P L P +P +G P G+ G R +P P
Sbjct: 414 QEIRTLALMGPPG-LPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGP 472
Query: 64 QDRAAAEGAPALLGGSPSSGSPGHPPGSAFGVEAGCRALNVSEHARGGFALGLPFGLSGG 123
Q +G P + G + GSPG +AG +G +P GL G
Sbjct: 473 QGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVP-GLPGP 531
Query: 124 AYLFLLLDGAGDPKPTPEAPISSADGRAWFPSESSWQLPQ-LPAGSTSGSEPRARPGLGP 182
G P P EA + A G F E + P LP S P GP
Sbjct: 532 EGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGP 591
Query: 183 RQLPTGPRDGAAGQGPGRGLTARLGREREIDCGPRQAGHGGTATDTGRAGSGARHRPPRD 242
+P G AG RG G G TG AG H PP D
Sbjct: 592 IGVP-----GPAGPKGERG----------------SKGDPGMTGPTGAAGLPGLHGPPGD 630
Query: 243 RGTPGLR 249
+G G R
Sbjct: 631 KGNRGER 637
Score = 36.2 bits (82), Expect = 0.028
Identities = 66/220 (30%), Positives = 77/220 (35%), Gaps = 36/220 (16%)
Query: 54 SRRRPSAP-------CSQDRAAAEGAPALLGGSPSSGSPGH--PPGSAFGVEAGCRALNV 104
SRRR AP C G P L G + G PG PG A G R
Sbjct: 104 SRRRREAPKTSPGCNCPPAFQGPTGRPGLPGDKGAIGMPGRVGSPGDAGLSIIGPRGPPG 163
Query: 105 SEHARGGFALGLPFGLSG-----GAYLFLLLDGA-GDPKPTPEAPISSADGRAWFP---- 154
RG P GL G G + L G G P P + G +P
Sbjct: 164 QPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLTGPPGQPGPQGQKGEKGQCGE--YPHRGE 221
Query: 155 -SESSWQLPQLPAGSTSGSEPRARPGL----GPRQLPTGPRDGAAGQGPGRGLTARLGRE 209
S++S Q P P G S P PGL GP LP P G G +G R G E
Sbjct: 222 QSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPP--GPKGDPGIQGYHGRKG-E 278
Query: 210 REIDCGPRQAGHGGTATDTGRAGSGARHRPPRDRGTPGLR 249
R + P G G G A +G + P G PG +
Sbjct: 279 RGM---PGMPGKHGAKGAPGIAVAGMKGEP----GIPGTK 311
Score = 29.3 bits (64), Expect = 3.4
Identities = 64/253 (25%), Positives = 82/253 (32%), Gaps = 40/253 (15%)
Query: 25 GKDPKSSPASSPSF-AVLGPEVRSTGGQAGSRRRPSAPCSQDRAAAEGAPALLGGSPSSG 83
G S P P +GP G G + P R G P + G + G
Sbjct: 235 GPPGPSGPLGHPGLPGPMGPP--GLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKG 292
Query: 84 SPGHPPGSAFGVEAGCRALNVSEHARGGFALGLPFGLSG-----GAYLFLLLDGAGDPKP 138
+PG G E G + A G + GLP GL G G + G G+P P
Sbjct: 293 APGIAVAGMKG-EPGIPGTKGEKGAEG--SPGLP-GLLGQKGEKGDAGNSIGGGRGEPGP 348
Query: 139 T----PEAPISSA--DGRAWFPSESSWQLPQLPAGSTSGSEP---RARPGLGP------- 182
P P A DG+ P + + + AG P + PG G
Sbjct: 349 PGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGEMVDYNGN 408
Query: 183 --------RQLPTGPRDGAAGQGPGRGLTARLGREREIDCGPRQAGHGGTATDTGRAGSG 234
R L G GQ G G++ EI P GH G G+ G
Sbjct: 409 INEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGL-PGPPGHDGEKGPRGKPGDM 467
Query: 235 ARHRPPRDRGTPG 247
PP +G PG
Sbjct: 468 G---PPGPQGPPG 477
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.136 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,727,963
Number of Sequences: 37866
Number of extensions: 1006803
Number of successful extensions: 7181
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 695
Number of HSP's that attempted gapping in prelim test: 4911
Number of HSP's gapped (non-prelim): 2065
length of query: 251
length of database: 18,247,518
effective HSP length: 100
effective length of query: 151
effective length of database: 14,460,918
effective search space: 2183598618
effective search space used: 2183598618
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.