Guide to the Human Genome
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Name: GSC2 Sequence: fasta or formatted (205aa) NCBI GI: 4885363
Description:

goosecoid homeobox 2

Referenced in:

Homeobox and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            17.1         35           4
 C cysteine            4.9         10           5
 D aspartate           0.5          1           1
 E glutamate           6.3         13           2
 F phenylalanine       2.0          4           1
 G glycine            10.2         21           2
 H histidine           1.5          3           1
 I isoleucine          2.0          4           1
 K lysine              3.4          7           2
 L leucine             8.3         17           2
 M methionine          0.5          1           1
 N asparagine          1.0          2           1
 P proline            12.2         25           2
 Q glutamine           3.9          8           1
 R arginine           12.2         25           2
 S serine              7.3         15           2
 T threonine           1.5          3           1
 V valine              3.4          7           1
 W tryptophan          1.5          3           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   goosecoid homeobox 2 
GSC                   0.204   goosecoid 
RAX                   0.175   retina and anterior neural fold homeobox 
DRGX                  0.155   dorsal root ganglia homeobox 
PITX2                 0.152   paired-like homeodomain transcription factor 2 isofo...
PITX2                 0.152   paired-like homeodomain transcription factor 2 isofo...
PITX2                 0.152   paired-like homeodomain transcription factor 2 isofo...
PITX1                 0.152   paired-like homeodomain transcription factor 1 [Hom...
OTX1                  0.152   orthodenticle homeobox 1 
ESX1                  0.152   extraembryonic, spermatogenesis, homeobox 1-like [Ho...
PITX3                 0.150   paired-like homeodomain 3 
MIXL1                 0.150   Mix-like homeobox protein 1 
VSX1                  0.147   visual system homeobox 1 isoform a 
RAX2                  0.145   retina and anterior neural fold homeobox 2 
CRX                   0.145   cone-rod homeobox protein 
PHOX2A                0.142   paired-like homeobox 2a 
PAX7                  0.137   paired box 7 isoform 1 
PAX7                  0.137   paired box 7 isoform 2 
PAX7                  0.137   paired box 7 isoform 3 
PHOX2B                0.137   paired-like homeobox 2b 
PRRX2                 0.137   paired related homeobox 2 
OTX2                  0.137   orthodenticle homeobox 2 isoform b 
PAX3                  0.135   paired box 3 isoform PAX3i 
PAX3                  0.135   paired box 3 isoform PAX3g 
PAX3                  0.135   paired box 3 isoform PAX3h 
PAX3                  0.135   paired box 3 isoform PAX3e 
PAX3                  0.135   paired box 3 isoform PAX3d 
PAX3                  0.135   paired box 3 isoform PAX3 
ARX                   0.135   aristaless related homeobox 
PAX6                  0.132   paired box gene 6 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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