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Search of human proteins with 42476085
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|42476085 IKK interacting protein isoform 3.1 [Homo sapiens]
(70 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|42476085 IKK interacting protein isoform 3.1 [Homo sapiens] 149 6e-37
gi|42491362 IKK interacting protein isoform 2 [Homo sapiens] 123 3e-29
gi|24233517 IKK interacting protein isoform 1 [Homo sapiens] 123 3e-29
gi|239756562 PREDICTED: hypothetical protein [Homo sapiens] 32 0.11
gi|18780273 collagen, type XXI, alpha 1 precursor [Homo sapiens] 32 0.11
gi|239751535 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24
gi|239746046 PREDICTED: hypothetical protein XP_002343643 [Homo ... 31 0.24
gi|157364939 phosphodiesterase 6C [Homo sapiens] 30 0.41
gi|239758117 PREDICTED: hypothetical protein [Homo sapiens] 30 0.53
gi|11277468 CD27-binding (Siva) protein isoform 1 [Homo sapiens] 30 0.53
gi|221625422 ephrin receptor EphA5 isoform b precursor [Homo sap... 29 0.70
gi|221625401 ephrin receptor EphA5 isoform a precursor [Homo sap... 29 0.70
gi|116256350 tuberous sclerosis 2 isoform 4 [Homo sapiens] 29 0.91
gi|116256352 tuberous sclerosis 2 isoform 1 [Homo sapiens] 29 0.91
gi|167412124 tuberous sclerosis 2 isoform 5 [Homo sapiens] 29 0.91
gi|239753274 PREDICTED: hypothetical protein [Homo sapiens] 29 0.91
gi|239750867 PREDICTED: hypothetical protein XP_002347588 [Homo ... 29 0.91
gi|239747844 PREDICTED: hypothetical protein XP_002346445 [Homo ... 29 0.91
gi|239745228 PREDICTED: hypothetical protein XP_002343392 [Homo ... 29 0.91
gi|239741651 PREDICTED: hypothetical protein XP_002342270 [Homo ... 29 0.91
gi|217330594 tubulin tyrosine ligase-like family, member 4 [Homo... 29 0.91
gi|239751010 PREDICTED: hypothetical protein [Homo sapiens] 28 1.2
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 28 1.6
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ... 28 1.6
gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo ... 28 1.6
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ... 28 1.6
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
gi|239754100 PREDICTED: hypothetical protein XP_002345880 [Homo ... 28 2.0
gi|169206489 PREDICTED: hypothetical protein [Homo sapiens] 28 2.0
gi|239748649 PREDICTED: hypothetical protein [Homo sapiens] 28 2.0
>gi|42476085 IKK interacting protein isoform 3.1 [Homo sapiens]
Length = 70
Score = 149 bits (375), Expect = 6e-37
Identities = 70/70 (100%), Positives = 70/70 (100%)
Query: 1 MSEVKSRKKSGPKGAPAAEPGKRSEGGKTPVARSSGGGGWADPRTCLSLLSLGTCLGLAC 60
MSEVKSRKKSGPKGAPAAEPGKRSEGGKTPVARSSGGGGWADPRTCLSLLSLGTCLGLAC
Sbjct: 1 MSEVKSRKKSGPKGAPAAEPGKRSEGGKTPVARSSGGGGWADPRTCLSLLSLGTCLGLAC 60
Query: 61 GRNLKLSWNN 70
GRNLKLSWNN
Sbjct: 61 GRNLKLSWNN 70
>gi|42491362 IKK interacting protein isoform 2 [Homo sapiens]
Length = 350
Score = 123 bits (309), Expect = 3e-29
Identities = 59/59 (100%), Positives = 59/59 (100%)
Query: 1 MSEVKSRKKSGPKGAPAAEPGKRSEGGKTPVARSSGGGGWADPRTCLSLLSLGTCLGLA 59
MSEVKSRKKSGPKGAPAAEPGKRSEGGKTPVARSSGGGGWADPRTCLSLLSLGTCLGLA
Sbjct: 1 MSEVKSRKKSGPKGAPAAEPGKRSEGGKTPVARSSGGGGWADPRTCLSLLSLGTCLGLA 59
>gi|24233517 IKK interacting protein isoform 1 [Homo sapiens]
Length = 377
Score = 123 bits (309), Expect = 3e-29
Identities = 59/59 (100%), Positives = 59/59 (100%)
Query: 1 MSEVKSRKKSGPKGAPAAEPGKRSEGGKTPVARSSGGGGWADPRTCLSLLSLGTCLGLA 59
MSEVKSRKKSGPKGAPAAEPGKRSEGGKTPVARSSGGGGWADPRTCLSLLSLGTCLGLA
Sbjct: 1 MSEVKSRKKSGPKGAPAAEPGKRSEGGKTPVARSSGGGGWADPRTCLSLLSLGTCLGLA 59
>gi|239756562 PREDICTED: hypothetical protein [Homo sapiens]
Length = 235
Score = 32.0 bits (71), Expect = 0.11
Identities = 22/58 (37%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Query: 5 KSRKKSGPKGAPAAEPGKRSEGGKTPV------ARSSGGGGWADPRTCLSLLSLGTCL 56
KS KK +G AA GG P A++ GGGG PR LL L CL
Sbjct: 174 KSHKKPRRRGQKAAPAKNSGGGGNKPQKAAAAGAKNRGGGGGKKPRRGRRLLGLLPCL 231
>gi|18780273 collagen, type XXI, alpha 1 precursor [Homo sapiens]
Length = 957
Score = 32.0 bits (71), Expect = 0.11
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 9 KSGPKGAPAAEPGKRSEGGKTPVARSSGGGGWADPRTCLSLLS 51
K GP G P PGK + GK + G G DP C S+++
Sbjct: 905 KEGPPGDPGL-PGKDGDHGKPGIQGQPGPPGICDPSLCFSVIA 946
>gi|239751535 PREDICTED: hypothetical protein [Homo sapiens]
Length = 255
Score = 30.8 bits (68), Expect = 0.24
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 12 PKGAPAAEPGKRSEGGKTPVARSSGGGGWA 41
P+G A G + GG PV R+ GGG WA
Sbjct: 35 PRGPRAGGGGGDAGGGGAPVRRARGGGCWA 64
>gi|239746046 PREDICTED: hypothetical protein XP_002343643 [Homo
sapiens]
Length = 255
Score = 30.8 bits (68), Expect = 0.24
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 12 PKGAPAAEPGKRSEGGKTPVARSSGGGGWA 41
P+G A G + GG PV R+ GGG WA
Sbjct: 35 PRGPRAGGGGGDAGGGGAPVRRARGGGCWA 64
>gi|157364939 phosphodiesterase 6C [Homo sapiens]
Length = 858
Score = 30.0 bits (66), Expect = 0.41
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 19 EPGKRSEGGKTPVARSSGGGGWADPRTCLSL 49
E K+ EGG A SGGG +TCL L
Sbjct: 828 EEAKKQEGGAEKAAEDSGGGDDKKSKTCLML 858
>gi|239758117 PREDICTED: hypothetical protein [Homo sapiens]
Length = 465
Score = 29.6 bits (65), Expect = 0.53
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 4 VKSRKKSGPKGAPAAEPGKRSEGGKTPVARSSGGGG 39
VKSRKK +G AA G+ + GKT GGGG
Sbjct: 244 VKSRKKLRQRGQKAAAAGQEAAAGKT-----CGGGG 274
>gi|11277468 CD27-binding (Siva) protein isoform 1 [Homo sapiens]
Length = 175
Score = 29.6 bits (65), Expect = 0.53
Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 12/72 (16%)
Query: 9 KSGPKGAPAAEPGKRSEGGKTPVARSSGGGGWADPRTCLSLLS------------LGTCL 56
K GP GAP A G+ G + RS G ADP S+ G C
Sbjct: 72 KPGPTGAPRAARGQMLIGPDGRLIRSLGQASEADPSGVASIACSSCVRAVDGKAVCGQCE 131
Query: 57 GLACGRNLKLSW 68
CG+ ++ W
Sbjct: 132 RALCGQCVRTCW 143
>gi|221625422 ephrin receptor EphA5 isoform b precursor [Homo
sapiens]
Length = 1015
Score = 29.3 bits (64), Expect = 0.70
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Query: 10 SGPKGAPAAEPGKRSEGGKTPVARSSGGGGWADPR-----TCLSL 49
SGP+GA P S GG TP+ +S G ++ PR TCL L
Sbjct: 4 SGPRGAGRRRPP--SGGGDTPITPASLAGCYSAPRRAPLWTCLLL 46
>gi|221625401 ephrin receptor EphA5 isoform a precursor [Homo
sapiens]
Length = 1037
Score = 29.3 bits (64), Expect = 0.70
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Query: 10 SGPKGAPAAEPGKRSEGGKTPVARSSGGGGWADPR-----TCLSL 49
SGP+GA P S GG TP+ +S G ++ PR TCL L
Sbjct: 4 SGPRGAGRRRPP--SGGGDTPITPASLAGCYSAPRRAPLWTCLLL 46
>gi|116256350 tuberous sclerosis 2 isoform 4 [Homo sapiens]
Length = 1740
Score = 28.9 bits (63), Expect = 0.91
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 6 SRKKSGPKGAPAAEPGKRSEGGKTPV 31
S GP+ APAA+P K S G + PV
Sbjct: 1108 SATSPGPRTAPAAKPEKASAGTRVPV 1133
>gi|116256352 tuberous sclerosis 2 isoform 1 [Homo sapiens]
Length = 1807
Score = 28.9 bits (63), Expect = 0.91
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 6 SRKKSGPKGAPAAEPGKRSEGGKTPV 31
S GP+ APAA+P K S G + PV
Sbjct: 1152 SATSPGPRTAPAAKPEKASAGTRVPV 1177
>gi|167412124 tuberous sclerosis 2 isoform 5 [Homo sapiens]
Length = 1784
Score = 28.9 bits (63), Expect = 0.91
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 6 SRKKSGPKGAPAAEPGKRSEGGKTPV 31
S GP+ APAA+P K S G + PV
Sbjct: 1152 SATSPGPRTAPAAKPEKASAGTRVPV 1177
>gi|239753274 PREDICTED: hypothetical protein [Homo sapiens]
Length = 263
Score = 28.9 bits (63), Expect = 0.91
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 6 SRKKSGPKGAPAAEPGKRSEGGKTPVARSSGGGGWADPR 44
SR+KS P+G P PG + G +SGG D R
Sbjct: 39 SRRKSAPRGGPGVLPGTKLNG----FCAASGGSRLGDQR 73
>gi|239750867 PREDICTED: hypothetical protein XP_002347588 [Homo
sapiens]
Length = 800
Score = 28.9 bits (63), Expect = 0.91
Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 5 KSRKKSGPKGAPAAEPGKRSEGGKTPVARSSG-GGGWADPRTCLSLLS 51
K R GP+G + G RS G ARS G GW P LLS
Sbjct: 532 KVRNPPGPRGGAMSAAGTRSPPGPAESARSRGPRPGWDTPEKGDHLLS 579
>gi|239747844 PREDICTED: hypothetical protein XP_002346445 [Homo
sapiens]
Length = 263
Score = 28.9 bits (63), Expect = 0.91
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 6 SRKKSGPKGAPAAEPGKRSEGGKTPVARSSGGGGWADPR 44
SR+KS P+G P PG + G +SGG D R
Sbjct: 39 SRRKSAPRGGPGVLPGTKLNG----FCAASGGSRLGDQR 73
>gi|239745228 PREDICTED: hypothetical protein XP_002343392 [Homo
sapiens]
Length = 488
Score = 28.9 bits (63), Expect = 0.91
Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 5 KSRKKSGPKGAPAAEPGKRSEGGKTPVARSSG-GGGWADPRTCLSLLS 51
K R GP+G + G RS G ARS G GW P LLS
Sbjct: 404 KVRNPPGPRGGAMSAAGTRSPPGPAESARSRGPRPGWDTPEKGDHLLS 451
>gi|239741651 PREDICTED: hypothetical protein XP_002342270 [Homo
sapiens]
Length = 337
Score = 28.9 bits (63), Expect = 0.91
Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 15/50 (30%)
Query: 5 KSRKKSGPKGAPAAEPGKRSEGG---------------KTPVARSSGGGG 39
KSRKK G AA G +S GG KT A+S GGGG
Sbjct: 156 KSRKKPQHWGQKAATAGAKSPGGGGKKPGQEKPAATGEKTRAAKSRGGGG 205
Score = 26.6 bits (57), Expect = 4.5
Identities = 15/46 (32%), Positives = 19/46 (41%)
Query: 5 KSRKKSGPKGAPAAEPGKRSEGGKTPVARSSGGGGWADPRTCLSLL 50
KSR G K A G + GGK P R G + + L+ L
Sbjct: 252 KSRGGGGIKPQKPAAAGAKIHGGKKPRRRGQSSGNGVEGQNSLAFL 297
>gi|217330594 tubulin tyrosine ligase-like family, member 4 [Homo
sapiens]
Length = 1199
Score = 28.9 bits (63), Expect = 0.91
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 1 MSEVKSRKKSGPKG-APAAEPGKRSEGGKTPVARSSGGGGWADPRTCLSLLSLGTCLGL 58
+ + S K+SGP G PA P K SEG P A W + + LS G GL
Sbjct: 13 LRQKNSFKQSGPSGTVPATPPEKPSEGRVWPQAHQQVKPIWKLEKKQVETLSAGLGPGL 71
>gi|239751010 PREDICTED: hypothetical protein [Homo sapiens]
Length = 220
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 5 KSRKKSGPKGAPAAEPGKRSEGGKTPVARSSGGGGWADPRTCLS 48
++R + PA PG+RS G P G GG P + L+
Sbjct: 166 RARGAPPARRTPARSPGRRSPGWGGPCTPGGGSGGECSPSSRLA 209
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 11 GPKGAPAAEPGKRSEGGKTPVARSSGGGGWADP 43
G KG A PG++ EGG VA GG G A P
Sbjct: 822 GGKGERGA-PGEKGEGGPPGVAGPPGGSGPAGP 853
>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
sapiens]
Length = 384
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/44 (31%), Positives = 19/44 (43%)
Query: 3 EVKSRKKSGPKGAPAAEPGKRSEGGKTPVARSSGGGGWADPRTC 46
+ +R G + + PG R +G AR S GG P TC
Sbjct: 143 QAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTC 186
>gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo
sapiens]
Length = 209
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/44 (31%), Positives = 19/44 (43%)
Query: 3 EVKSRKKSGPKGAPAAEPGKRSEGGKTPVARSSGGGGWADPRTC 46
+ +R G + + PG R +G AR S GG P TC
Sbjct: 143 QAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTC 186
>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
sapiens]
Length = 384
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/44 (31%), Positives = 19/44 (43%)
Query: 3 EVKSRKKSGPKGAPAAEPGKRSEGGKTPVARSSGGGGWADPRTC 46
+ +R G + + PG R +G AR S GG P TC
Sbjct: 143 QAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTC 186
>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/44 (31%), Positives = 19/44 (43%)
Query: 3 EVKSRKKSGPKGAPAAEPGKRSEGGKTPVARSSGGGGWADPRTC 46
+ +R G + + PG R +G AR S GG P TC
Sbjct: 143 QAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTC 186
>gi|239754100 PREDICTED: hypothetical protein XP_002345880 [Homo
sapiens]
Length = 125
Score = 27.7 bits (60), Expect = 2.0
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 23 RSEGGKTPVARSSGGGGWADPRTCLSLLSLGTCLGLACGRN 63
RS+ + P S GG G ++ L GT +GL C R+
Sbjct: 23 RSQTSRGPAQPSKGGPGVLGSKSSLGRGPTGTLVGLPCSRS 63
>gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 27.7 bits (60), Expect = 2.0
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 10 SGPKGAPA---AEPGKRSEGGKTPVARSSGGGG 39
SG + P A PGK + G P AR GGGG
Sbjct: 376 SGARTLPTPSRARPGKPAPRGSAPPARLRGGGG 408
>gi|239748649 PREDICTED: hypothetical protein [Homo sapiens]
Length = 125
Score = 27.7 bits (60), Expect = 2.0
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 23 RSEGGKTPVARSSGGGGWADPRTCLSLLSLGTCLGLACGRN 63
RS+ + P S GG G ++ L GT +GL C R+
Sbjct: 23 RSQTSRGPAQPSKGGPGVLGSKSSLGRGPTGTLVGLPCSRS 63
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.131 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,529,612
Number of Sequences: 37866
Number of extensions: 155727
Number of successful extensions: 1014
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 938
Number of HSP's gapped (non-prelim): 123
length of query: 70
length of database: 18,247,518
effective HSP length: 43
effective length of query: 27
effective length of database: 16,619,280
effective search space: 448720560
effective search space used: 448720560
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.