Guide to the Human Genome
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Name: LOC100293129 Sequence: fasta or formatted (465aa) NCBI GI: 239758117
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.8         55           4
 C cysteine            1.9          9           1
 D aspartate           2.4         11           1
 E glutamate           4.5         21           1
 F phenylalanine       0.6          3           1
 G glycine            14.0         65           4
 H histidine           2.6         12           2
 I isoleucine          2.6         12           3
 K lysine              9.5         44           2
 L leucine             6.7         31           4
 M methionine          1.5          7           1
 N asparagine          2.6         12           1
 P proline             6.0         28           2
 Q glutamine           7.3         34           1
 R arginine           11.0         51           3
 S serine              7.1         33           2
 T threonine           2.2         10           1
 V valine              3.7         17           2
 W tryptophan          1.7          8           1
 Y tyrosine            0.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100292062          0.385   PREDICTED: hypothetical protein XP_002346314 
LOC100291835          0.385   PREDICTED: hypothetical protein XP_002346266 
LOC100290552          0.355   PREDICTED: hypothetical protein XP_002347697 
LOC100287688          0.349   PREDICTED: hypothetical protein XP_002342270 
LOC100290780          0.333   PREDICTED: hypothetical protein XP_002348295 
LOC100292035          0.295   PREDICTED: hypothetical protein XP_002345623 
LOC100292383          0.264   PREDICTED: hypothetical protein 
LOC100292262          0.248   PREDICTED: hypothetical protein 
LOC100292370          0.132   PREDICTED: hypothetical protein 
LOC100292724          0.047   PREDICTED: hypothetical protein 
LOC100291599          0.042   PREDICTED: hypothetical protein XP_002346265 
LOC100293021          0.038   PREDICTED: hypothetical protein 
LOC100293793          0.038   PREDICTED: hypothetical protein 
LOC100293418          0.037   PREDICTED: hypothetical protein 
LOC100291569          0.035   PREDICTED: hypothetical protein XP_002346264 
LOC338758             0.033   PREDICTED: hypothetical protein 
LOC338758             0.031   PREDICTED: hypothetical protein 
LOC338758             0.031   PREDICTED: hypothetical protein 
HIST1H1E              0.029   histone cluster 1, H1e 
LOC728650             0.029   PREDICTED: hypothetical protein 
LOC728650             0.028   PREDICTED: hypothetical protein 
LOC642424             0.028   PREDICTED: similar to hCG1742442 
SCAF1                 0.027   SR-related CTD-associated factor 1 
HIST1H1B              0.026   histone cluster 1, H1b 
CYLC2                 0.026   cylicin 2 
LOC100133599          0.025   PREDICTED: hypothetical protein 
MBD2                  0.024   methyl-CpG binding domain protein 2 testis-specific i...
MBD2                  0.024   methyl-CpG binding domain protein 2 isoform 1 
HRNR                  0.024   hornerin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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