Guide to the Human Genome
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Name: LOC100291551 Sequence: fasta or formatted (263aa) NCBI GI: 239747844
Description:

PREDICTED: hypothetical protein XP_002346445

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.0         42           3
 C cysteine            3.8         10           1
 D aspartate           1.9          5           1
 E glutamate           3.8         10           1
 F phenylalanine       3.0          8           1
 G glycine            12.5         33           2
 H histidine           1.9          5           1
 I isoleucine          0.4          1           1
 K lysine              1.5          4           1
 L leucine             8.4         22           2
 M methionine          0.4          1           1
 N asparagine          0.8          2           1
 P proline             9.9         26           2
 Q glutamine           4.2         11           1
 R arginine           12.2         32           4
 S serine             11.4         30           2
 T threonine           4.2         11           2
 V valine              2.7          7           1
 W tryptophan          1.1          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346445 
LOC100293319          0.996   PREDICTED: hypothetical protein 
COL3A1                0.037   collagen type III alpha 1 preproprotein 
KLF16                 0.035   BTE-binding protein 4 
LOC100132848          0.033   PREDICTED: hypothetical protein 
COL1A2                0.029   alpha 2 type I collagen 
CXorf67               0.029   hypothetical protein LOC340602 
FOXD1                 0.029   forkhead box D1 
LOC348751             0.027   PREDICTED: hypothetical protein 
LOC348751             0.027   PREDICTED: hypothetical protein isoform 4 
LOC348751             0.027   PREDICTED: hypothetical protein isoform 2 
LOC728650             0.027   PREDICTED: hypothetical protein 
LOC728046             0.027   PREDICTED: hypothetical protein 
LOC100287063          0.025   PREDICTED: hypothetical protein 
SCAF1                 0.025   SR-related CTD-associated factor 1 
LOC100293975          0.025   PREDICTED: hypothetical protein 
LOC100290812          0.025   PREDICTED: hypothetical protein XP_002347678 
LOC100288205          0.025   PREDICTED: hypothetical protein XP_002343496 
LOC100292122          0.023   PREDICTED: hypothetical protein XP_002345138 
LOC100292591          0.023   PREDICTED: hypothetical protein 
LOC100286986          0.023   PREDICTED: hypothetical protein XP_002344191 
DACT3                 0.023   thymus expressed gene 3-like 
SP8                   0.023   Sp8 transcription factor isoform 1 
SP8                   0.023   Sp8 transcription factor isoform 2 
LOC100292150          0.023   PREDICTED: hypothetical protein 
LOC100290302          0.023   PREDICTED: hypothetical protein XP_002346480 
LOC100287337          0.023   PREDICTED: hypothetical protein XP_002342320 
LOC100132891          0.023   PREDICTED: hypothetical protein 
LOC100132891          0.023   PREDICTED: hypothetical protein 
LOC100132891          0.023   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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