Guide to the Human Genome
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Name: LOC100287688 Sequence: fasta or formatted (337aa) NCBI GI: 239741651
Description:

PREDICTED: hypothetical protein XP_002342270

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.2         48           4
 C cysteine            2.1          7           1
 D aspartate           2.1          7           1
 E glutamate           5.0         17           1
 F phenylalanine       0.6          2           1
 G glycine            14.8         50           4
 H histidine           1.2          4           1
 I isoleucine          1.5          5           1
 K lysine              9.2         31           2
 L leucine             7.4         25           4
 M methionine          1.2          4           1
 N asparagine          1.8          6           1
 P proline             6.5         22           1
 Q glutamine           6.5         22           1
 R arginine           11.3         38           3
 S serine              7.1         24           2
 T threonine           3.6         12           1
 V valine              2.4          8           1
 W tryptophan          1.2          4           1
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342270 
LOC100293129          0.495   PREDICTED: hypothetical protein 
LOC100292035          0.476   PREDICTED: hypothetical protein XP_002345623 
LOC100291835          0.438   PREDICTED: hypothetical protein XP_002346266 
LOC100292383          0.389   PREDICTED: hypothetical protein 
LOC100292062          0.377   PREDICTED: hypothetical protein XP_002346314 
LOC100290780          0.369   PREDICTED: hypothetical protein XP_002348295 
LOC100292262          0.349   PREDICTED: hypothetical protein 
LOC100290552          0.335   PREDICTED: hypothetical protein XP_002347697 
LOC100292370          0.138   PREDICTED: hypothetical protein 
C6orf174              0.038   hypothetical protein LOC387104 
HIST1H1E              0.037   histone cluster 1, H1e 
MARCKS                0.034   myristoylated alanine-rich protein kinase C substra...
TNRC18                0.032   trinucleotide repeat containing 18 
LOC284988             0.031   PREDICTED: hypothetical protein 
LOC100130128          0.031   PREDICTED: hypothetical protein 
CHD6                  0.031   chromodomain helicase DNA binding protein 6 
LOC100292655          0.031   PREDICTED: similar to armadillo repeat containing, ...
LOC100130128          0.029   PREDICTED: hypothetical protein 
LOC643355             0.029   PREDICTED: hypothetical protein 
LOC100130128          0.029   PREDICTED: hypothetical protein 
LOC643355             0.029   PREDICTED: hypothetical protein 
FLJ37078              0.029   hypothetical protein LOC222183 
LOC338758             0.029   PREDICTED: hypothetical protein 
SPEN                  0.029   spen homolog, transcriptional regulator 
MEPCE                 0.029   bin3, bicoid-interacting 3 
LOC338758             0.028   PREDICTED: hypothetical protein 
LOC100289737          0.028   PREDICTED: hypothetical protein XP_002347183 
LOC338758             0.028   PREDICTED: hypothetical protein 
LOC100288678          0.028   PREDICTED: hypothetical protein XP_002343039 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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