Guide to the Human Genome
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Name: LOC100287186 Sequence: fasta or formatted (125aa) NCBI GI: 239748649
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {125aa} PREDICTED: hypothetical protein XP_002342580
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.4         13           2
 C cysteine            3.2          4           1
 D aspartate           0.8          1           1
 E glutamate           4.8          6           1
 F phenylalanine       1.6          2           1
 G glycine            12.0         15           2
 H histidine           0.8          1           1
 I isoleucine          0.0          0           0
 K lysine              2.4          3           1
 L leucine             8.8         11           2
 M methionine          0.8          1           1
 N asparagine          0.0          0           0
 P proline            12.8         16           1
 Q glutamine           2.4          3           1
 R arginine           10.4         13           1
 S serine             12.0         15           2
 T threonine           6.4          8           1
 V valine              8.0         10           2
 W tryptophan          1.6          2           1
 Y tyrosine            0.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291863          1.000   PREDICTED: hypothetical protein XP_002345880 
LOC100287186          0.983   PREDICTED: hypothetical protein XP_002342580 
NCOA2                 0.039   nuclear receptor coactivator 2 
LOC729296             0.039   PREDICTED: similar to hCG2017976 
LOC729296             0.039   PREDICTED: hypothetical protein 
LOC729296             0.039   PREDICTED: similar to hCG2017976 
MAP4                  0.039   microtubule-associated protein 4 isoform 4 
MAP4                  0.039   microtubule-associated protein 4 isoform 1 
PRG4                  0.034   proteoglycan 4 isoform D 
PRG4                  0.034   proteoglycan 4 isoform C 
PRG4                  0.034   proteoglycan 4 isoform B 
ZNF395                0.034   zinc finger protein 395 
PRG4                  0.034   proteoglycan 4 isoform A 
TP53I13               0.034   tumor protein p53 inducible protein 13 
TBX1                  0.030   T-box 1 isoform C 
ZXDB                  0.030   zinc finger, X-linked, duplicated B 
NACA                  0.030   nascent polypeptide-associated complex alpha subuni...
LOC100288869          0.030   PREDICTED: hypothetical protein XP_002343771 
COL5A2                0.026   alpha 2 type V collagen preproprotein 
LOC100293898          0.026   PREDICTED: hypothetical protein 
C19orf57              0.026   hypothetical protein LOC79173 
COL1A2                0.026   alpha 2 type I collagen 
LOC652119             0.021   PREDICTED: similar to putative DUX4 protein 
LOC652119             0.021   PREDICTED: similar to putative DUX4 protein 
CCDC8                 0.021   coiled-coil domain containing 8 
COL11A2               0.021   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.021   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.021   collagen, type XI, alpha 2 isoform 1 preproprotein ...
MYO1F                 0.021   myosin IF 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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