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Search of human proteins with 40787999
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|40787999 single-stranded DNA binding protein 2 [Homo
sapiens]
(361 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|40787999 single-stranded DNA binding protein 2 [Homo sapiens] 779 0.0
gi|58218981 single stranded DNA binding protein 3 isoform c [Hom... 654 0.0
gi|21955170 single stranded DNA binding protein 3 isoform a [Hom... 639 0.0
gi|21314684 single stranded DNA binding protein 3 isoform b [Hom... 612 e-175
gi|58218984 single stranded DNA binding protein 4 isoform b [Hom... 573 e-163
gi|14249150 single stranded DNA binding protein 4 isoform a [Hom... 560 e-160
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 78 1e-14
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 75 7e-14
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 74 2e-13
gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo s... 73 3e-13
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 72 1e-12
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 71 2e-12
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 71 2e-12
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 71 2e-12
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 70 2e-12
gi|154759255 collagen, type XXVIII precursor [Homo sapiens] 69 5e-12
gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo s... 69 7e-12
gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens] 69 7e-12
gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens] 69 7e-12
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 69 9e-12
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 68 1e-11
gi|160707881 formin 2 [Homo sapiens] 68 1e-11
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 67 2e-11
gi|21389357 MAPK-interacting and spindle-stabilizing protein [Ho... 67 3e-11
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 66 4e-11
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 66 4e-11
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 66 4e-11
gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo ... 66 4e-11
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 66 4e-11
gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo s... 66 4e-11
>gi|40787999 single-stranded DNA binding protein 2 [Homo sapiens]
Length = 361
Score = 779 bits (2012), Expect = 0.0
Identities = 361/361 (100%), Positives = 361/361 (100%)
Query: 1 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF 60
MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
Sbjct: 1 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF 60
Query: 61 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP 120
LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
Sbjct: 61 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP 120
Query: 121 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTP 180
GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTP
Sbjct: 121 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTP 180
Query: 181 PRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGNY 240
PRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGNY
Sbjct: 181 PRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGNY 240
Query: 241 VGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGM 300
VGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGM
Sbjct: 241 VGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGM 300
Query: 301 ESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMGGNFLNPFQSESYSPSMTMS 360
ESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMGGNFLNPFQSESYSPSMTMS
Sbjct: 301 ESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMGGNFLNPFQSESYSPSMTMS 360
Query: 361 V 361
V
Sbjct: 361 V 361
>gi|58218981 single stranded DNA binding protein 3 isoform c [Homo
sapiens]
Length = 361
Score = 654 bits (1686), Expect = 0.0
Identities = 303/364 (83%), Positives = 329/364 (90%), Gaps = 6/364 (1%)
Query: 1 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF 60
M+ KGK SAVPSD QAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
Sbjct: 1 MFAKGKG--SAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF 58
Query: 61 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP 120
LHSWWCVFWDLYCAAPERR+TCEHSSEAKAFHDYSAAAAPSPVLGNIPP DGMP GP+PP
Sbjct: 59 LHSWWCVFWDLYCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPP 118
Query: 121 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTP 180
GFFQPFMSPRY GGPRPP+R+ NQ GGVPG+QPLLP+ MDPTRQQGHPNMGG MQRM P
Sbjct: 119 GFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNP 178
Query: 181 PRGMVPL--GPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPG 238
PRGM P+ GPQNYG MRPP N+L GP MPG+NMGPG GRPWPNP +ANSIPYSS+SPG
Sbjct: 179 PRGMGPMGPGPQNYGSGMRPPPNSL-GPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPG 237
Query: 239 NYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLG 298
YVGPPGGGGPPGTPIMPSPADSTNS DN+YT++N VPPG +R NFPMGPGSDGPMGG+G
Sbjct: 238 TYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMG 297
Query: 299 GMESHHMNGSLGSGDMDSISKNSPNNMS-LSNQPGTPRDDGEMGGNFLNPFQSESYSPSM 357
GME HHMNGSLGSGD+D + KNSPNN+S +SN PGTPRDDGE+GGNFL+ FQ+++YSPSM
Sbjct: 298 GMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELGGNFLHSFQNDNYSPSM 357
Query: 358 TMSV 361
TMSV
Sbjct: 358 TMSV 361
>gi|21955170 single stranded DNA binding protein 3 isoform a [Homo
sapiens]
Length = 388
Score = 639 bits (1648), Expect = 0.0
Identities = 303/391 (77%), Positives = 329/391 (84%), Gaps = 33/391 (8%)
Query: 1 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF 60
M+ KGK SAVPSD QAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
Sbjct: 1 MFAKGKG--SAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF 58
Query: 61 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP 120
LHSWWCVFWDLYCAAPERR+TCEHSSEAKAFHDYSAAAAPSPVLGNIPP DGMP GP+PP
Sbjct: 59 LHSWWCVFWDLYCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPP 118
Query: 121 GFF---------------------------QPFMSPRYPGGPRPPLRIPNQALGGVPGSQ 153
GFF QPFMSPRY GGPRPP+R+ NQ GGVPG+Q
Sbjct: 119 GFFQGPPGSQPSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQ 178
Query: 154 PLLPSGMDPTRQQGHPNMGGPMQRMTPPRGMVPL--GPQNYGGAMRPPLNALGGPGMPGM 211
PLLP+ MDPTRQQGHPNMGG MQRM PPRGM P+ GPQNYG MRPP N+L GP MPG+
Sbjct: 179 PLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSL-GPAMPGI 237
Query: 212 NMGPGGGRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTL 271
NMGPG GRPWPNP +ANSIPYSS+SPG YVGPPGGGGPPGTPIMPSPADSTNS DN+YT+
Sbjct: 238 NMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTM 297
Query: 272 MNAVPPGPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMS-LSNQ 330
+N VPPG +R NFPMGPGSDGPMGG+GGME HHMNGSLGSGD+D + KNSPNN+S +SN
Sbjct: 298 INPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNP 357
Query: 331 PGTPRDDGEMGGNFLNPFQSESYSPSMTMSV 361
PGTPRDDGE+GGNFL+ FQ+++YSPSMTMSV
Sbjct: 358 PGTPRDDGELGGNFLHSFQNDNYSPSMTMSV 388
>gi|21314684 single stranded DNA binding protein 3 isoform b [Homo
sapiens]
Length = 368
Score = 612 bits (1579), Expect = e-175
Identities = 292/372 (78%), Positives = 318/372 (85%), Gaps = 15/372 (4%)
Query: 1 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF 60
M+ KGK SAVPSD QAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
Sbjct: 1 MFAKGKG--SAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF 58
Query: 61 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP 120
LHSWWCVFWDLYCAAPERR+TCEHSSEAKAFHDYSAAAAPSPVLGNIPP DGMP GP+PP
Sbjct: 59 LHSWWCVFWDLYCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPP 118
Query: 121 GFFQ--------PFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMG 172
GFFQ P P P P + +Q GGVPG+QPLLP+ MDPTRQQGHPNMG
Sbjct: 119 GFFQGPPGSQPSPHAQPP-PHNPSSMMGPHSQPPGGVPGTQPLLPNSMDPTRQQGHPNMG 177
Query: 173 GPMQRMTPPRGMVPL--GPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSI 230
G MQRM PPRGM P+ GPQNYG MRPP N+L GP MPG+NMGPG GRPWPNP +ANSI
Sbjct: 178 GSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSL-GPAMPGINMGPGAGRPWPNPNSANSI 236
Query: 231 PYSSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGS 290
PYSS+SPG YVGPPGGGGPPGTPIMPSPADSTNS DN+YT++N VPPG +R NFPMGPGS
Sbjct: 237 PYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGS 296
Query: 291 DGPMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMS-LSNQPGTPRDDGEMGGNFLNPFQ 349
DGPMGG+GGME HHMNGSLGSGD+D + KNSPNN+S +SN PGTPRDDGE+GGNFL+ FQ
Sbjct: 297 DGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELGGNFLHSFQ 356
Query: 350 SESYSPSMTMSV 361
+++YSPSMTMSV
Sbjct: 357 NDNYSPSMTMSV 368
>gi|58218984 single stranded DNA binding protein 4 isoform b [Homo
sapiens]
Length = 363
Score = 573 bits (1476), Expect = e-163
Identities = 269/365 (73%), Positives = 303/365 (83%), Gaps = 6/365 (1%)
Query: 1 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF 60
MY KG SAVPSDSQAREKLALYVYEYLLH+GAQKSAQTFLSEIRWEKNITLGEPPGF
Sbjct: 1 MYAKG-GKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGF 59
Query: 61 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP 120
LHSWWCVFWDLYCAAP+RRE CEHS EAKAF DYSAAAAPSPV+G++ PGD M G +
Sbjct: 60 LHSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAA 119
Query: 121 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPT-RQQGHPNMGGPMQRMT 179
GFFQPFMSPR+PGGPRP LR+P+Q G+PGSQPLLP M+P+ R QGHP+MGGPMQR+T
Sbjct: 120 GFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVT 179
Query: 180 PPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGN 239
PPRGM +GPQ+YGG MRPP N+L GPG+P MNMGPG PW +P + NSIPYSS+SPG+
Sbjct: 180 PPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASP-SGNSIPYSSSSPGS 238
Query: 240 YVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGG 299
Y GPPGGGGPPGTPIMPSP DSTNS +NMYT+MN + G R NFP+GPG +GPM +
Sbjct: 239 YTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSA 298
Query: 300 MESHHMNGSLGSGDMDSISKNSPNNMS-LSNQPGTPRDDGEM--GGNFLNPFQSESYSPS 356
ME HH+NGSLGSGDMD + K+SP ++ LSN PGTPRDDGEM G FL+PF SESYSP
Sbjct: 299 MEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPG 358
Query: 357 MTMSV 361
MTMSV
Sbjct: 359 MTMSV 363
>gi|14249150 single stranded DNA binding protein 4 isoform a [Homo
sapiens]
Length = 385
Score = 560 bits (1443), Expect = e-160
Identities = 269/387 (69%), Positives = 303/387 (78%), Gaps = 28/387 (7%)
Query: 1 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF 60
MY KG SAVPSDSQAREKLALYVYEYLLH+GAQKSAQTFLSEIRWEKNITLGEPPGF
Sbjct: 1 MYAKG-GKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGF 59
Query: 61 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP 120
LHSWWCVFWDLYCAAP+RRE CEHS EAKAF DYSAAAAPSPV+G++ PGD M G +
Sbjct: 60 LHSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAA 119
Query: 121 GFF----------------------QPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPS 158
GFF QPFMSPR+PGGPRP LR+P+Q G+PGSQPLLP
Sbjct: 120 GFFQGPPGSQPSPHNPNAPMMGPHGQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPG 179
Query: 159 GMDPT-RQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGG 217
M+P+ R QGHP+MGGPMQR+TPPRGM +GPQ+YGG MRPP N+L GPG+P MNMGPG
Sbjct: 180 AMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGV 239
Query: 218 GRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPP 277
PW +P + NSIPYSS+SPG+Y GPPGGGGPPGTPIMPSP DSTNS +NMYT+MN +
Sbjct: 240 RGPWASP-SGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQ 298
Query: 278 GPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMS-LSNQPGTPRD 336
G R NFP+GPG +GPM + ME HH+NGSLGSGDMD + K+SP ++ LSN PGTPRD
Sbjct: 299 GAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRD 358
Query: 337 DGEM--GGNFLNPFQSESYSPSMTMSV 361
DGEM G FL+PF SESYSP MTMSV
Sbjct: 359 DGEMAAAGTFLHPFPSESYSPGMTMSV 385
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 78.2 bits (191), Expect = 1e-14
Identities = 75/233 (32%), Positives = 94/233 (40%), Gaps = 27/233 (11%)
Query: 112 GMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNM 171
G+P P PG P +PG P PP + + G PG+ P LP P GHP
Sbjct: 1104 GLPGLPGTPGAKGQPGLPGFPGTPGPP---GPKGISGPPGN-PGLPGEPGPVGGGGHPGQ 1159
Query: 172 GGPM-QRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSI 230
GP ++ P + +P G +P G PG+PG++ G G P N +
Sbjct: 1160 PGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPG-L 1218
Query: 231 PYSSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGS 290
P PG + G PG GPPG P P PA G+ PGP P PG
Sbjct: 1219 PGPKGEPG-FHGFPGVQGPPGPPGSPGPALEGPKGN----------PGPQGP-----PGR 1262
Query: 291 DGPMG--GLGGMESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMG 341
GP G GL G E G G+G + K +P L PG D G G
Sbjct: 1263 PGPTGFQGLPGPEG--PPGLPGNGGIKG-EKGNPGQPGLPGLPGLKGDQGPPG 1312
Score = 70.9 bits (172), Expect = 2e-12
Identities = 81/266 (30%), Positives = 95/266 (35%), Gaps = 61/266 (22%)
Query: 109 PGDGMPVGPVPPGFFQPFMSPRYPGGPRPPLRI-----------------PNQALGGVPG 151
PG G+P P P GF P + P PG P P RI P AL G PG
Sbjct: 704 PGIGLPGPPGPKGF--PGI-PGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPG 760
Query: 152 SQ--PLLPSGMDPTRQQGHPNMGGPMQR-----MTPPRGMVPLGPQNYGGAMRPPLNALG 204
P + P +G P GP R + P+G V GP G M PP
Sbjct: 761 PPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDV--GPNGQPGPMGPP----- 813
Query: 205 GPGMPGMNM-GPGGGRPWPNPTNA---NSIPYSSASPG----NYVGPPGGGGPPGTPIMP 256
G+PG+ + GP G P P + IP PG + GPPG G PG P P
Sbjct: 814 --GLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAP 871
Query: 257 SPADSTNSGDNMYTLMNAVPPG-PNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMD 315
P PPG P P G G G +G M G LG
Sbjct: 872 GPIG---------------PPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRS 916
Query: 316 SISKNSPNNMSLSNQPGTPRDDGEMG 341
+ + L QPG P GE G
Sbjct: 917 GV-PGLKGDDGLQGQPGLPGPTGEKG 941
Score = 67.4 bits (163), Expect = 2e-11
Identities = 78/255 (30%), Positives = 95/255 (37%), Gaps = 45/255 (17%)
Query: 109 PGDGMPVGPVPPGF--FQPFMSPR----YPGGPRPPLRIPNQALGGVPGSQPLLPSGMDP 162
PG +P P PPG F+ + P+ +PG P PP R L G+PG P
Sbjct: 751 PGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGR---TGLDGLPG----------P 797
Query: 163 TRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGP-GMPGMNMGPG-GGRP 220
G GPM P G+ +G Q G PP + GP G PG++ PG G P
Sbjct: 798 KGDVGPNGQPGPM----GPPGLPGIGVQ---GPPGPP--GIPGPIGQPGLHGIPGEKGDP 848
Query: 221 WPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPG-- 278
P + P SPG G PG GPPG+P +P A ++ + PPG
Sbjct: 849 GPPGLDVPGPPGERGSPG-IPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPP 907
Query: 279 -----PNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGS-------GDMDSISKNSPNNMS 326
P R P G DG G G GS G G MD S
Sbjct: 908 GPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKG 967
Query: 327 LSNQPGTPRDDGEMG 341
PG P G G
Sbjct: 968 EPGLPGIPGVSGPKG 982
Score = 66.6 bits (161), Expect = 3e-11
Identities = 86/280 (30%), Positives = 103/280 (36%), Gaps = 64/280 (22%)
Query: 108 PPGD-GMPVGPVPPGFFQPFMSPRYPG--------------------GPRPPLRIPNQAL 146
PPG+ G P P PG P SP PG GP PL IP ++
Sbjct: 858 PPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRS- 916
Query: 147 GGVPG--------SQPLLPSGMDPTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRP 198
GVPG QP LP +G P + GP M P LG + G
Sbjct: 917 -GVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNL----LGSKGEKGEP-- 969
Query: 199 PLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPS- 257
G PG+PG++ GP G + P P S PG GPPG G PG P P
Sbjct: 970 -----GLPGIPGVS-GPKGYQGLPGDPGQ---PGLSGQPG-LPGPPGPKGNPGLPGQPGL 1019
Query: 258 ---PADSTNSGDNMYTLMNAV--PPGPNR-PNFPMGPGSDGPMGGLG--GMESHHMNGSL 309
P GD + V PPGP+ P P PG G G G G+ S + G
Sbjct: 1020 IGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLP 1079
Query: 310 GSGDMDSIS--------KNSPNNMSLSNQPGTPRDDGEMG 341
G + K S + L PGTP G+ G
Sbjct: 1080 GPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPG 1119
Score = 61.6 bits (148), Expect = 1e-09
Identities = 79/278 (28%), Positives = 93/278 (33%), Gaps = 72/278 (25%)
Query: 108 PPG-------DGMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGM 160
PPG DG+P P P G P P +PG P G+PG +P
Sbjct: 70 PPGPRGQKGDDGIPGPPGPKGIRGPPGLPGFPGTP------------GLPG----MPGHD 113
Query: 161 DPTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMN-------- 212
QG P G P G + G PP G PG+PGM
Sbjct: 114 GAPGPQGIPGCNGTKGERGFP------GSPGFPGLQGPP----GPPGIPGMKGEPGSIIM 163
Query: 213 ---MGPGGGRPWPNPTNANSIPYSSASPGNY--VGPPGGGGPPGTPIMPSPADSTNSGDN 267
GP G +P P +P + PG GPPG GPPG P +P P N G N
Sbjct: 164 SSLPGPKGNPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGP--KGNMGLN 221
Query: 268 MYTLMNAV-------PPGP-------NRP---NFPMG----PGSDGPMG--GLGGMESHH 304
PPGP RP F G PG GP G G+ G
Sbjct: 222 FQGPKGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGDQGLPGDRGPPGPPGIRGPPGPP 281
Query: 305 MNGSLGSGDMDSISK-NSPNNMSLSNQPGTPRDDGEMG 341
G+ K P + QPG P G+ G
Sbjct: 282 GGEKGEKGEQGEPGKRGKPGKDGENGQPGIPGLPGDPG 319
Score = 61.6 bits (148), Expect = 1e-09
Identities = 71/253 (28%), Positives = 85/253 (33%), Gaps = 43/253 (16%)
Query: 108 PPG----DGMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPT 163
PPG G P P PG P +PG P PP G+PG P+G
Sbjct: 1129 PPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPG-----PAGQKG- 1182
Query: 164 RQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMR--PPLNALGGP-------GMPGMNMG 214
+ G P G P P G+ L Q G + P L GP G PG+
Sbjct: 1183 -EPGQPGFGNP-----GPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGP 1236
Query: 215 PGG-GRPWPNPTNANSIPYSSASPGN-----YVGPPGGGGPPGTPIMPSPADSTNSGDNM 268
PG G P P P PG + G PG GPPG P G+
Sbjct: 1237 PGPPGSPGPALEGPKGNPGPQGPPGRPGPTGFQGLPGPEGPPGLP-----------GNGG 1285
Query: 269 YTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMSLS 328
P P P P G GP G G +NG G + + P S
Sbjct: 1286 IKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGV-PGFPGMKGPS 1344
Query: 329 NQPGTPRDDGEMG 341
PG+ +GE G
Sbjct: 1345 GVPGSAGPEGEPG 1357
Score = 60.1 bits (144), Expect = 3e-09
Identities = 78/276 (28%), Positives = 94/276 (34%), Gaps = 39/276 (14%)
Query: 93 DYSAAAAPSPVLGNIPPGDGMPVGPVPPGFFQPFMSPRY------PGGPRPP-LRIP--- 142
D P P+ PG G+ P PPG P P G P PP L +P
Sbjct: 800 DVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPP 859
Query: 143 -NQALGGVPGSQ-PLLPSGM----DPTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGG-- 194
+ G+PG+ P+ P G G P G M M PP PLG G
Sbjct: 860 GERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVP 919
Query: 195 AMRPPLNALGGPGMPGMNMGPGG-------GRPWPNPTNANSIPYSSASPGNYVGPPGGG 247
++ G PG+PG G G P P N PG G PG
Sbjct: 920 GLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPG-LPGIPGVS 978
Query: 248 GPPGTPIMP-SPADSTNSGDNMYTLMNAVPPGP-NRPNFPMGPGSDGPMGGLGGMESHHM 305
GP G +P P SG PPGP P P PG GP G G +
Sbjct: 979 GPKGYQGLPGDPGQPGLSGQPGL----PGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGF 1034
Query: 306 NGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMG 341
G G + P + QPG+P G+ G
Sbjct: 1035 PGPQG-------VEGPPGPSGVPGQPGSPGLPGQKG 1063
Score = 59.3 bits (142), Expect = 5e-09
Identities = 70/263 (26%), Positives = 94/263 (35%), Gaps = 37/263 (14%)
Query: 108 PPG-DGMPVGPV---PPGFFQPFMSPR----YPGGPRPPLRIPNQALGGVPGSQP----- 154
PPG DG P P PPG P + P PG P PP ++ L G G +
Sbjct: 421 PPGLDGQPGAPGLPGPPGPAGPHIPPSDEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDT 480
Query: 155 ---LLPSGMD-PTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPG 210
+ +G+ P Q G P + GP + P G + GA P G PG+PG
Sbjct: 481 CFNCIGTGISGPPGQPGLPGLPGPPGSLGFPGQK---GEKGQAGATGPK----GLPGIPG 533
Query: 211 MNMGPGGGRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPS-------PADSTN 263
PG P + + P G +G PG G PG P P P
Sbjct: 534 APGAPGFPGSKGEPGDILTFPGMKGDKGE-LGSPGAPGLPGLPGTPGQDGLPGLPGPKGE 592
Query: 264 SGDNMYTLMNAVPPGPNRPNFP-----MGPGSDGPMGGLGGMESHHMNGSLGSGDMDSIS 318
G + P P P P MGP GP G +G + G+ G +
Sbjct: 593 PGGITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPK 652
Query: 319 KNSPNNMSLSNQPGTPRDDGEMG 341
+ ++ +PG P + G G
Sbjct: 653 GDPGQTITQPGKPGLPGNPGRDG 675
Score = 57.4 bits (137), Expect = 2e-08
Identities = 73/251 (29%), Positives = 89/251 (35%), Gaps = 45/251 (17%)
Query: 108 PPGD-GMPVGPVPPGFFQP-----------FMSPRYPGGPRPPLRIPNQ-ALGGVPGSQP 154
PPG G P P PG P F P+ GP P +P Q G+PG +
Sbjct: 1004 PPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKG 1063
Query: 155 LLPSGMDPTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNAL----GGPGMPG 210
G G P + GP + P P P G P L L G G PG
Sbjct: 1064 --DKGDPGISSIGLPGLPGP--KGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPG 1119
Query: 211 MNMGPGGGRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYT 270
+ PG P P P + P + PG GP GGGG PG P P + G +
Sbjct: 1120 LPGFPGTPGP-PGPKGISGPPGNPGLPGE-PGPVGGGGHPGQP--GPPGEKGKPGQDGIP 1175
Query: 271 LMNAVPPGPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMSLSNQ 330
P +P F G+ GP G G ++G G G + I N
Sbjct: 1176 GPAGQKGEPGQPGF----GNPGPPGLPG------LSGQKGDGGLPGIPGN---------- 1215
Query: 331 PGTPRDDGEMG 341
PG P GE G
Sbjct: 1216 PGLPGPKGEPG 1226
Score = 57.0 bits (136), Expect = 3e-08
Identities = 66/204 (32%), Positives = 79/204 (38%), Gaps = 41/204 (20%)
Query: 146 LGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGG 205
L G PG P P G P Q+G + GP P+G+ GP G P G
Sbjct: 61 LPGFPG--PEGPPG--PRGQKGDDGIPGP----PGPKGI--RGPPGLPGFPGTP----GL 106
Query: 206 PGMPGMNMGPGG-GRPWPNPTNAN-SIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTN 263
PGMPG + PG G P N T P S PG GPPG PPG P M
Sbjct: 107 PGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPG-LQGPPG---PPGIPGM-------- 154
Query: 264 SGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMDSISKNSPN 323
G+ +M+++P P +P PG G G G + G +G P
Sbjct: 155 KGEPGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTG------IPGPIGP-------PGPPG 201
Query: 324 NMSLSNQPGTPRDDGEMGGNFLNP 347
M PG P G MG NF P
Sbjct: 202 LMGPPGPPGLPGPKGNMGLNFQGP 225
Score = 56.2 bits (134), Expect = 4e-08
Identities = 69/243 (28%), Positives = 84/243 (34%), Gaps = 53/243 (21%)
Query: 108 PPGDGMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQG 167
PPG + P PPG F R G P I +PG P G+D Q G
Sbjct: 387 PPGAAVMGPPGPPG----FPGERGQKGDEGPPGI------SIPG-----PPGLD--GQPG 429
Query: 168 HPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPG--------GGR 219
P + GP P GP PP + + PG PG PG G +
Sbjct: 430 APGLPGPPG---------PAGPH------IPPSDEICEPGPPGPPGSPGDKGLQGEQGVK 474
Query: 220 PWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMP-SPADSTNSGDNMYTLMNAVPPG 278
T N I + P G PG GPPG+ P + +G + +P
Sbjct: 475 GDKGDTCFNCIGTGISGPPGQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGA 534
Query: 279 PNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDG 338
P P FP G G + GM+ G LG SP L PGTP DG
Sbjct: 535 PGAPGFPGSKGEPGDILTFPGMKGD--KGELG----------SPGAPGLPGLPGTPGQDG 582
Query: 339 EMG 341
G
Sbjct: 583 LPG 585
Score = 54.3 bits (129), Expect = 2e-07
Identities = 70/246 (28%), Positives = 89/246 (36%), Gaps = 57/246 (23%)
Query: 112 GMPVGPVPPGFFQPFMSPRYPGGPRPPLRIP----NQALGGVPGSQPLLPSGMDPTRQQG 167
G+P P PGF P G P L P ++ G PG+ P LP Q G
Sbjct: 530 GIPGAPGAPGF------PGSKGEPGDILTFPGMKGDKGELGSPGA-PGLPGLPGTPGQDG 582
Query: 168 HPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGM--NMGPGGGRPWPNPT 225
P + GP P G+ + G PP G PG+PG+ N+GP G + P
Sbjct: 583 LPGLPGPKGE---PGGIT------FKGERGPP----GNPGLPGLPGNIGPMGPPGFGPP- 628
Query: 226 NANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFP 285
P G G G PG P +P P GD T+ P +P P
Sbjct: 629 ----------GPVGEKGIQGVAGNPGQPGIPGP-----KGDPGQTITQ-----PGKPGLP 668
Query: 286 MGPGSDGPMG-----GLGGMES-HHMNGSLGSGDMDSISKNSPNN----MSLSNQPGTPR 335
PG DG +G GL G + GS G + I P + PG P
Sbjct: 669 GNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPG 728
Query: 336 DDGEMG 341
G +G
Sbjct: 729 TPGRIG 734
Score = 49.7 bits (117), Expect = 4e-06
Identities = 73/269 (27%), Positives = 92/269 (34%), Gaps = 58/269 (21%)
Query: 109 PGDGMPVGPVPPGFFQPFMSPRYPGGPR-------------PPLRIPNQALGGVPG--SQ 153
PGD P GP PG P P PGG + P + G+PG
Sbjct: 263 PGDRGPPGP--PGIRGP---PGPPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIPGLPGD 317
Query: 154 PLLPS--GMDPTR-QQGHPNMGGPMQRMTP---------PRGMVPL-------GPQNYGG 194
P P G D + Q+G GP + P +G + L G + + G
Sbjct: 318 PGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPG 377
Query: 195 AMRPPLNALGGPGMPGMN-MGPGGGRPWPNPTNANSIPYSSASPGNYV-GPPGGGGPPGT 252
PP G PG PG MGP G +P PG + GPPG G PG
Sbjct: 378 IQGPP----GLPGPPGAAVMGPPGPPGFPGERGQKG---DEGPPGISIPGPPGLDGQPGA 430
Query: 253 PIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSG 312
P +P P +G ++ PGP P P PG G G G + G G
Sbjct: 431 PGLPGPPGP--AGPHIPPSDEICEPGP--PGPPGSPGDKGLQGEQG------VKGDKGDT 480
Query: 313 DMDSISKNSPNNMSLSNQPGTPRDDGEMG 341
+ I PG P G +G
Sbjct: 481 CFNCIGTGISGPPGQPGLPGLPGPPGSLG 509
Score = 49.3 bits (116), Expect = 5e-06
Identities = 74/253 (29%), Positives = 89/253 (35%), Gaps = 56/253 (22%)
Query: 99 APSPVLGNIPPGDGMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGS--QPLL 156
+P P L P G+ P GP PG P PG PP N + G G+ QP L
Sbjct: 1242 SPGPALEG-PKGNPGPQGP--PGRPGPTGFQGLPGPEGPPGLPGNGGIKGEKGNPGQPGL 1298
Query: 157 PS------GMDPTRQQGHPNMGGPMQRMTPPRGM--VPLGPQNYGGAMRPPLNALGGPGM 208
P P QG+P G + M G+ VP P G + P + G G
Sbjct: 1299 PGLPGLKGDQGPPGLQGNPGRPG-LNGMKGDPGLPGVPGFPGMKGPSGVP--GSAGPEGE 1355
Query: 209 PGMNMGPGGGRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNM 268
PG+ +GP G P P+ + I A P G PG G PG
Sbjct: 1356 PGL-IGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPG----------------- 1397
Query: 269 YTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMSLS 328
P GP P GP D GL G + G+G K P L
Sbjct: 1398 -------PQGPQGLPGPTGPPGDPGRNGLPGFD--------GAGG----RKGDP---GLP 1435
Query: 329 NQPGTPRDDGEMG 341
QPGT DG G
Sbjct: 1436 GQPGTRGLDGPPG 1448
Score = 40.8 bits (94), Expect = 0.002
Identities = 44/152 (28%), Positives = 52/152 (34%), Gaps = 21/152 (13%)
Query: 102 PVLGNIPPGDGMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMD 161
P L +P GM PG P P G P PP L G G ++
Sbjct: 1329 PGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPP------GLPGPSGQSIIIKGDAG 1382
Query: 162 PTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPW 221
P G P + G P GPQ G PP + G G+PG + G GG +
Sbjct: 1383 PPGIPGQPGLKGLPG---------PQGPQGLPGPTGPPGDP-GRNGLPGFD-GAGGRKGD 1431
Query: 222 PNPTNANSIPYSSASPGNYVGPPGGGGPPGTP 253
P PG P G GPPG P
Sbjct: 1432 PGLPGQPGTRGLDGPPG----PDGLQGPPGPP 1459
Score = 30.8 bits (68), Expect = 2.0
Identities = 35/125 (28%), Positives = 39/125 (31%), Gaps = 13/125 (10%)
Query: 242 GPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMG-PGSDGPMGGLGGM 300
G PG G PG P P P PPGP P G PG G GL GM
Sbjct: 51 GFPGLEGHPGLPGFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGPPGLPGFPG-TPGLPGM 109
Query: 301 ESHH----------MNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMGGNFLNPFQS 350
H NG+ G S P PG P GE G ++
Sbjct: 110 PGHDGAPGPQGIPGCNGTKGERGFPG-SPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPG 168
Query: 351 ESYSP 355
+P
Sbjct: 169 PKGNP 173
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 75.5 bits (184), Expect = 7e-14
Identities = 83/274 (30%), Positives = 96/274 (35%), Gaps = 51/274 (18%)
Query: 85 SSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQ 144
SS D S +PS + GN P G P G +P P PG P+ P P Q
Sbjct: 14 SSAQNLNEDVSQEESPSLIAGN-------PQGAPPQGGNKPQGPPSPPGKPQGP---PPQ 63
Query: 145 ALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALG 204
G+QP P P + QG P GG + PP G P GP G R P + G
Sbjct: 64 G-----GNQPQGPP-PPPGKPQGPPPQGGNKPQGPPPPGK-PQGPPPQGDKSRSPRSPPG 116
Query: 205 GPGMPGMNMG-------PGGGRPWPNPTNANSIPYSSASPGNYVGPPGGG--------GP 249
P P G P G+P P + P PG GPP G P
Sbjct: 117 KPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRSP 176
Query: 250 PGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGMESHHMNGSL 309
PG P P P G N PP P +P P G + P G G
Sbjct: 177 PGKPQGPPP-----QGGNQ---PQGPPPPPGKPQGPPPQGGNKPQ---GPPPPGKPQGPP 225
Query: 310 GSGDMDSISKNSPNNMSLSNQPGTPRDDGEMGGN 343
GD S S SP PG P+ GGN
Sbjct: 226 PQGDNKSQSARSP--------PGKPQGPPPQGGN 251
Score = 73.9 bits (180), Expect = 2e-13
Identities = 84/282 (29%), Positives = 92/282 (32%), Gaps = 49/282 (17%)
Query: 102 PVLGNIPPGD----GMPVGPVPPGFFQPFMSPRYPGGPR-PPLRIPNQALGGVPGSQPLL 156
P GN P G G P GP P G QP P PG P+ PP + N+ G P +P
Sbjct: 41 PQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQG 100
Query: 157 PSGMD---------PTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAM---RPPLNALG 204
P P + QG P GG + PP P GP GG PP
Sbjct: 101 PPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQ 160
Query: 205 GPGMPGMN-----MGPGGGRPWPNPTNANSIPYSSASPGNYVGPP--GGGGPPGTPIMPS 257
GP G N P G P P N PG GPP GG P G P
Sbjct: 161 GPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGK 220
Query: 258 PADSTNSGDNMYTLMNAVPPG----------------PNRPNFPMGPGSDGPMGGLGGME 301
P GDN + PPG P P P GP G G
Sbjct: 221 PQGPPPQGDNKSQSARS-PPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPP 279
Query: 302 SHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMGGN 343
G G S S SP PG P+ GGN
Sbjct: 280 PGKPQGPPPQGGSKSRSSRSP--------PGKPQGPPPQGGN 313
Score = 69.3 bits (168), Expect = 5e-12
Identities = 71/229 (31%), Positives = 81/229 (35%), Gaps = 43/229 (18%)
Query: 100 PSPVLGNIPPGD----GMPVGPVPPGFFQPFMSPRYPGGPRPP----------LRIPNQA 145
P P GN P G G P GP P G +P P PG P+ P R P
Sbjct: 183 PPPQGGNQPQGPPPPPGKPQGPPPQGGNKP-QGPPPPGKPQGPPPQGDNKSQSARSPPGK 241
Query: 146 LGGVP---GSQPLLPSGMDPTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGG----AMRP 198
G P G+QP P P + QG P GG + PP G P GP GG + R
Sbjct: 242 PQGPPPQGGNQPQGPPP-PPGKPQGPPPQGGNKPQGPPPPGK-PQGPPPQGGSKSRSSRS 299
Query: 199 PLNALGGPGMPGMNM----GPGGGRPWPNPTNANSIPYSSASPGNYVGPPGGGG------ 248
P GP G N P G+P P + P PG GPP GG
Sbjct: 300 PPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSA 359
Query: 249 --PPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMG 295
PPG P P + N PP P P P + P G
Sbjct: 360 RSPPGKPQGPPQQEGNNP-------QGPPPPAGGNPQQPQAPPAGQPQG 401
Score = 67.4 bits (163), Expect = 2e-11
Identities = 68/219 (31%), Positives = 78/219 (35%), Gaps = 35/219 (15%)
Query: 108 PPGDGMPVGPVPPGFFQPFMSPRYPGGPR-PPLRIPNQALGGVPGSQPLLP--------- 157
PPG P GP P G QP P PG P+ PP + N+ G P +P P
Sbjct: 176 PPGK--PQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQ 233
Query: 158 -SGMDPTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGP- 215
+ P + QG P GG + PP P GP GG N GP PG GP
Sbjct: 234 SARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGG------NKPQGPPPPGKPQGPP 287
Query: 216 --GG----------GRPW-PNPTNANSIPYSSASPGNYVGPP--GGGGPPGTPIMPSPAD 260
GG G+P P P N PG GPP GG P G P P
Sbjct: 288 PQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQG 347
Query: 261 STNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGG 299
G + + P P P G GP GG
Sbjct: 348 PPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPAGG 386
Score = 65.9 bits (159), Expect = 6e-11
Identities = 64/212 (30%), Positives = 75/212 (35%), Gaps = 45/212 (21%)
Query: 95 SAAAAPSPVLGNIPPGDGMPVGPVPPGFFQPFMSPRYPGGPR-PPLRIPNQALGGVPGSQ 153
S+ + P G P G P GP PP PG P+ PP + N+ G P +
Sbjct: 172 SSRSPPGKPQGPPPQGGNQPQGPPPP-----------PGKPQGPPPQGGNKPQGPPPPGK 220
Query: 154 PLLP----------SGMDPTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNAL 203
P P + P + QG P GG + PP P GP GG N
Sbjct: 221 PQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGG------NKP 274
Query: 204 GGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGNYVGPP--GGGGPPGTPIMP-SPAD 260
GP PG G P P + S + PG GPP GG P G P P P
Sbjct: 275 QGPPPPGKPQG-------PPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQG 327
Query: 261 STNSGDNMYTLMNAVPPGPNRPNFPMGPGSDG 292
G N P GP P P GP G
Sbjct: 328 PPPQGGNK-------PQGPPPPGKPQGPPPQG 352
Score = 42.7 bits (99), Expect = 5e-04
Identities = 43/127 (33%), Positives = 50/127 (39%), Gaps = 28/127 (22%)
Query: 100 PSPVLGNIPPGD----GMPVGPVPPGFFQPF--MSPRYPGGPRPPLRIPNQALGGVPGSQ 153
P P GN P G G P GP P G +P P P GP P +++ PG
Sbjct: 307 PPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGK- 365
Query: 154 PLLPSGMDPTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNM 213
P G P +Q+G+ G P PP G P PQ PP GP P
Sbjct: 366 ---PQG--PPQQEGNNPQGPP-----PPAGGNPQQPQ------APPAGQPQGPPRP---- 405
Query: 214 GPGGGRP 220
P GGRP
Sbjct: 406 -PQGGRP 411
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 73.9 bits (180), Expect = 2e-13
Identities = 86/295 (29%), Positives = 102/295 (34%), Gaps = 48/295 (16%)
Query: 110 GDGMPVGPVP-PGFFQPFMSPRYPGGPRPPLRIPNQALGG---VPGSQ----PLLPSG-- 159
G+ P GP PG P S PG PP + Q L G +PG + P+ P G
Sbjct: 650 GEPGPHGPPGVPGSVGPKGSSGSPGPQGPPGPVGLQGLRGEVGLPGVKGDKGPMGPPGPK 709
Query: 160 -----MDPTRQQGHPNMGGPMQRMTPPRG---MVPLGPQNYGG-----------AMRPPL 200
P G P M G + P M P GP + G +R P
Sbjct: 710 GDQGEKGPRGLTGEPGMRGLPGAVGEPGAKGAMGPAGPDGHQGPRGEQGLTGMPGIRGPP 769
Query: 201 NALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGNYV--------------GPPGG 246
G PG PG+ GP G + P I +PG V GPPG
Sbjct: 770 GPSGDPGKPGLT-GPQGPQGLPGTPGRPGIKGEPGAPGKIVTSEGSSMLTVPGPPGPPGA 828
Query: 247 GGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGMESHHMN 306
GPPG P P PA + L PPGP P P GP GP G G +
Sbjct: 829 MGPPGPPGAPGPAGPAGLPGHQEVLNLQGPPGPPGPRGPPGPSIPGPPGP-RGPPGEGLP 887
Query: 307 GSLGSGDMDSISKNSPNNMS-LSNQPGTPRDDGEMGGNFLNPFQSESYSPSMTMS 360
G G S NS +S PG P G+ G Q E P + S
Sbjct: 888 GP--PGPPGSFLSNSETFLSGPPGPPGPPGPKGDQGPPGPRGHQGEQGLPGFSTS 940
Score = 70.9 bits (172), Expect = 2e-12
Identities = 75/261 (28%), Positives = 92/261 (35%), Gaps = 47/261 (18%)
Query: 112 GMPVGPVPPGFFQPFMSPRYPG--GPRPPLRIPNQ----ALGGVPGS--QPLLPSGMDPT 163
GMP PPG P P PG GP+ P +P + G PG+ + + G
Sbjct: 761 GMPGIRGPPG---PSGDPGKPGLTGPQGPQGLPGTPGRPGIKGEPGAPGKIVTSEGSSML 817
Query: 164 RQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGG---GRP 220
G P G M PP P GP G LN G PG PG PG G P
Sbjct: 818 TVPGPPGPPGAMGPPGPPGAPGPAGPAGLPGHQEV-LNLQGPPGPPGPRGPPGPSIPGPP 876
Query: 221 WPNPTNANSIPYSSASPGNYV-----------GPPGGGGPPGTPIMPSPADS-------- 261
P +P PG+++ GPPG GP G P P
Sbjct: 877 GPRGPPGEGLPGPPGPPGSFLSNSETFLSGPPGPPGPPGPKGDQGPPGPRGHQGEQGLPG 936
Query: 262 -TNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMDSISKN 320
+ SG + + L PPGP P P G D + G G+ S G
Sbjct: 937 FSTSGSSSFGLNLQGPPGPPGPQGPKGDKGDPGVPGALGIPSGPSEG------------G 984
Query: 321 SPNNMSLSNQPGTPRDDGEMG 341
S + M +S PG P G G
Sbjct: 985 SSSTMYVSGPPGPPGPPGPPG 1005
Score = 63.5 bits (153), Expect = 3e-10
Identities = 66/215 (30%), Positives = 81/215 (37%), Gaps = 50/215 (23%)
Query: 100 PSPVLGNIPPGDGMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSG 159
P P PPG+G+P P PPG F G P PP G PG
Sbjct: 873 PGPPGPRGPPGEGLPGPPGPPGSFLSNSETFLSGPPGPP---------GPPG-------- 915
Query: 160 MDPTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGR 219
P QG P G P G G ++G LN G PG PG GP G +
Sbjct: 916 --PKGDQGPPGPRGHQGEQGLP-GFSTSGSSSFG------LNLQGPPGPPG-PQGPKGDK 965
Query: 220 PWPNPTNANSIPYSSASPGN----YV-GPPGGGGPPGTPIMPSPA--------DSTNSGD 266
P A IP + G+ YV GPPG GPPG P S + D
Sbjct: 966 GDPGVPGALGIPSGPSEGGSSSTMYVSGPPGPPGPPGPPGSISSSGQEIQQYISEYMQSD 1025
Query: 267 NMYTLMNAV--PPGPNRPNFPMGPGSDGPMGGLGG 299
++ + ++ V PPGP PG GP+ + G
Sbjct: 1026 SIRSYLSGVQGPPGP--------PGPPGPVTTITG 1052
Score = 38.5 bits (88), Expect = 0.009
Identities = 45/149 (30%), Positives = 49/149 (32%), Gaps = 16/149 (10%)
Query: 201 NALGGPGMPGM--NMGPGGGRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSP 258
N G PG G + GP G R +P IP PG GP G G G P M P
Sbjct: 564 NLRGSPGPKGDMGSPGPKGDRGFPGTPG---IPGPLGHPGPQ-GPKGQKGSVGDPGMEGP 619
Query: 259 ADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMDSIS 318
M A PPG G GP G G S GS GS
Sbjct: 620 MGQRGREGPMGPRGEAGPPGSGEKGERGAAGEPGPHGPPGVPGSVGPKGSSGSPG----P 675
Query: 319 KNSPNNMSLS------NQPGTPRDDGEMG 341
+ P + L PG D G MG
Sbjct: 676 QGPPGPVGLQGLRGEVGLPGVKGDKGPMG 704
Score = 38.1 bits (87), Expect = 0.012
Identities = 46/147 (31%), Positives = 62/147 (42%), Gaps = 12/147 (8%)
Query: 202 ALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTP-IMPSPAD 260
++G PG PG G P + S+ S G VGPPG GPPG P + S
Sbjct: 1144 SIGLPGPPGPP-----GLPGTSYEELLSLLRGSEFRG-IVGPPGPPGPPGIPGNVWSSIS 1197
Query: 261 STNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMDSIS-K 319
+ ++T + PGP P P PG GP G G + ++ S S + IS
Sbjct: 1198 VEDLSSYLHTAGLSFIPGP--PGPPGPPGPRGPPGVSGALATYAAENS-DSFRSELISYL 1254
Query: 320 NSPNNMS-LSNQPGTPRDDGEMGGNFL 345
SP+ S + PG P G G + L
Sbjct: 1255 TSPDVRSFIVGPPGPPGPQGPPGDSRL 1281
Score = 28.9 bits (63), Expect = 7.5
Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 13/108 (12%)
Query: 204 GGPGMPGMNMGPGGGRPWPNPTNANSIPYSS------ASPG--NYV----GPPGGGGPPG 251
G PG PG PG NS + S SP +++ GPPG GPPG
Sbjct: 1218 GPPGPPGPRGPPGVSGALATYAAENSDSFRSELISYLTSPDVRSFIVGPPGPPGPQGPPG 1277
Query: 252 TPIMPSPADSTNSGDNMYTLMNAVPPGPN-RPNFPMGPGSDGPMGGLG 298
+ S S + G + + ++V G + + G G G +G G
Sbjct: 1278 DSRLLSTDASHSRGSSSSSHSSSVRRGSSYSSSMSTGGGGAGSLGAGG 1325
Score = 28.9 bits (63), Expect = 7.5
Identities = 28/97 (28%), Positives = 34/97 (35%), Gaps = 23/97 (23%)
Query: 204 GGPGMPGMNMGPGGGRPWPNPTNANS-IPYSSASPGNYVGPPGGGGPPGTPIMPSPADST 262
G PG PG PG + + +N + + + G GPPG G GTP
Sbjct: 1399 GPPGQPGPQGPPGISKVFSAYSNVTADLMDFFQTYGAIQGPPGQKGEMGTP--------- 1449
Query: 263 NSGDNMYTLMNAVPPGPNRPNFPMG-PGSDGPMGGLG 298
P G P P G PG GP G G
Sbjct: 1450 ------------GPKGDRGPAGPPGHPGPPGPRGHKG 1474
Score = 28.5 bits (62), Expect = 9.8
Identities = 38/138 (27%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 204 GGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTN 263
G PG PG + G G ++ I +S G +G PG GPPG P
Sbjct: 1109 GPPGPPGAS-GDGSLLSLDYAELSSRILSYMSSSGISIGLPGPPGPPGLP--------GT 1159
Query: 264 SGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMDSISKNSPN 323
S + + +L+ G PG GP G G + S S+ D+ S +
Sbjct: 1160 SYEELLSLLR----GSEFRGIVGPPGPPGPPGIPGNVWS-----SISVEDLSSYL----H 1206
Query: 324 NMSLSNQPGTPRDDGEMG 341
LS PG P G G
Sbjct: 1207 TAGLSFIPGPPGPPGPPG 1224
>gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo
sapiens]
Length = 921
Score = 73.2 bits (178), Expect = 3e-13
Identities = 81/277 (29%), Positives = 98/277 (35%), Gaps = 43/277 (15%)
Query: 78 RRETCEHSSEAKAFHDYSAAAAPSPVLGNI-PPGDGMPVGPVPPGFFQPFMSPRYPGGPR 136
RRETC H+ A PS PPG+ P GP PG P
Sbjct: 248 RRETC---------HELPARITPSQTTDERGPPGEQGPPGP--------------PGPPG 284
Query: 137 PPLRIPNQALGGVPGSQ-PLLPSGMDPTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGA 195
P + G+ G + P P G P G P G + P GP G+
Sbjct: 285 VP------GIDGIDGDRGPKGPPG--PPGPAGEPGKPGAPGKPGTPGADGLTGPDGSPGS 336
Query: 196 MRPPLNALGGPGMPGMNMGPGGGRPWP-NPTNANSIPYSSASPGNYVGPPGGGGPPGTPI 254
+ G PG+PG PG G P P P +P G VG PG GPPG P
Sbjct: 337 IGSK-GQKGEPGVPGSRGFPGRGIPGPPGPPGTAGLPGELGRVGP-VGDPGRRGPPGPPG 394
Query: 255 MPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLG-SGD 313
P P + D NA PPG R +P PG G G G + G G GD
Sbjct: 395 PPGPRGTIGFHDGDPLCPNACPPG--RSGYPGLPGMRGHKGAKGEIGEPGRQGHKGEEGD 452
Query: 314 MDSI----SKNSPNNMSLSNQPGTPRDDGEMGGNFLN 346
+ ++ P L G D GE G L+
Sbjct: 453 QGELGEVGAQGPPGAQGLRGITGIVGDKGEKGARGLD 489
Score = 51.6 bits (122), Expect = 1e-06
Identities = 59/209 (28%), Positives = 69/209 (33%), Gaps = 31/209 (14%)
Query: 107 IPPGDGMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQ 166
+P G P P PPG P PG P + G PG + + P QQ
Sbjct: 551 MPGTKGEPGKPGPPGDAGLQGLPGVPGIPGAKGVAGEKGSTGAPGKPGQMGNSGKPG-QQ 609
Query: 167 GHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPG---------- 216
G P GP P LGP G + L +LG PG+PG+ PG
Sbjct: 610 GPPGEVGPRGPQGLPGSRGELGPVGSPG-LPGKLGSLGSPGLPGLPGPPGLPGMKGDRGV 668
Query: 217 GGRPWPNPTNANSIPYSSASPGNYV------GPPGGGGPPGTPIMPSPADSTNSGDNMYT 270
G P P S A + GP G G PG P + P S
Sbjct: 669 VGEPGPKGEQGASGEEGEAGERGELGDIGLPGPKGSAGNPGEPGLRGPEGSRGL------ 722
Query: 271 LMNAVPPGPNRPNFPMGP-GSDGPMGGLG 298
PG P P GP G G G G
Sbjct: 723 ------PGVEGPRGPPGPRGVQGEQGATG 745
Score = 50.8 bits (120), Expect = 2e-06
Identities = 61/206 (29%), Positives = 76/206 (36%), Gaps = 32/206 (15%)
Query: 144 QALGGVPGSQPLLPSGMDPTRQQGHPNMGGPM-QRMTPPRGMVPLGPQNYGGAMRPPLNA 202
+ L G PG Q L P Q+G P GP R +P P G P ++
Sbjct: 486 RGLDGEPGPQGL-PGAPGDQGQRGPPGEAGPKGDRGAEGARGIPGLPGPKGDTGLPGVDG 544
Query: 203 LGG-PGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGN--YVGPPGGGGPPGTPIMPSPA 259
G PGMPG PG +P P PG+ G PG G PG +
Sbjct: 545 RDGIPGMPGTKGEPG--KPGP--------------PGDAGLQGLPGVPGIPGAKGVAGEK 588
Query: 260 DSTNSGDNMYTLMNAVPPGPNRPNFPMGP----GSDGPMGGLGGMESHHMNGSLGSGDMD 315
ST + + N+ PG P +GP G G G LG + S + G LG
Sbjct: 589 GSTGAPGKPGQMGNSGKPGQQGPPGEVGPRGPQGLPGSRGELGPVGSPGLPGKLG----- 643
Query: 316 SISKNSPNNMSLSNQPGTPRDDGEMG 341
S SP L PG P G+ G
Sbjct: 644 --SLGSPGLPGLPGPPGLPGMKGDRG 667
Score = 45.8 bits (107), Expect = 6e-05
Identities = 66/264 (25%), Positives = 84/264 (31%), Gaps = 62/264 (23%)
Query: 132 PGGPRPPLRIPNQALGGVPGSQ--------PLLPSGMDPTRQQGHPNMGGP--MQRMTPP 181
PG PP + + G+PGS+ P LP + G P + GP + M
Sbjct: 606 PGQQGPPGEVGPRGPQGLPGSRGELGPVGSPGLPGKLGSLGSPGLPGLPGPPGLPGMKGD 665
Query: 182 RGMV----PLGPQNYGG--------------AMRPPLNALGGPGMPGMNMGPGGGRPWPN 223
RG+V P G Q G + P + G PG PG+ GP G R P
Sbjct: 666 RGVVGEPGPKGEQGASGEEGEAGERGELGDIGLPGPKGSAGNPGEPGLR-GPEGSRGLPG 724
Query: 224 PTNANSIPYSSASPGNY--VGPPGGGGPPGTPIMPSPADSTNSGDNMYTLM--------- 272
P G G PG GPPG +P D M +
Sbjct: 725 VEGPRGPPGPRGVQGEQGATGLPGVQGPPGR----APTDQHIKQVCMRVIQEHFAEMAAS 780
Query: 273 -----NAVPPGPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLG----------SGDMDSI 317
+ P RP P PG G G G M + G G GD+
Sbjct: 781 LKRPDSGATGLPGRPGPPGPPGPPGENGFPGQMGIRGLPGIKGPPGALGLRGPKGDLGEK 840
Query: 318 SKNSPNNMSLSNQPGT---PRDDG 338
+ P + PG P D G
Sbjct: 841 GERGPPGRGPNGLPGAIGLPGDPG 864
Score = 38.1 bits (87), Expect = 0.012
Identities = 40/132 (30%), Positives = 49/132 (37%), Gaps = 13/132 (9%)
Query: 139 LRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGG--PMQRMTPPRGMV----PLGPQNY 192
L+ P+ G+PG +P P P + G P G + + P G + P G
Sbjct: 781 LKRPDSGATGLPG-RPGPPGPPGPPGENGFPGQMGIRGLPGIKGPPGALGLRGPKGDLGE 839
Query: 193 GGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPG--NYVGPPGGGGPP 250
G PP G G+PG PG P P N PG G PG GPP
Sbjct: 840 KGERGPP--GRGPNGLPGAIGLPGD--PGPASYGRNGRDGERGPPGVAGIPGVPGPPGPP 895
Query: 251 GTPIMPSPADST 262
G P PA T
Sbjct: 896 GLPGFCEPASCT 907
Score = 37.4 bits (85), Expect = 0.021
Identities = 58/200 (29%), Positives = 67/200 (33%), Gaps = 51/200 (25%)
Query: 107 IPPGDGMPVGPVPPGFFQPFMSPRYPG-----GPRPPLRIPN-QALGGVPGSQPLLPSGM 160
+P G P PG P S PG GP P + Q G+PG Q P G
Sbjct: 698 LPGPKGSAGNPGEPGLRGPEGSRGLPGVEGPRGPPGPRGVQGEQGATGLPGVQG--PPGR 755
Query: 161 DPTRQ----------QGH----------PNMG--GPMQRMTPPRGMVPLGPQNYGGAM-- 196
PT Q Q H P+ G G R PP P G + G M
Sbjct: 756 APTDQHIKQVCMRVIQEHFAEMAASLKRPDSGATGLPGRPGPPGPPGPPGENGFPGQMGI 815
Query: 197 RPPLNALGGPGMPGMNMGPGG-----GRPWPNPTNANSIPYSSASPGN------------ 239
R G PG G+ GP G G P N +P + PG+
Sbjct: 816 RGLPGIKGPPGALGLR-GPKGDLGEKGERGPPGRGPNGLPGAIGLPGDPGPASYGRNGRD 874
Query: 240 -YVGPPGGGGPPGTPIMPSP 258
GPPG G PG P P P
Sbjct: 875 GERGPPGVAGIPGVPGPPGP 894
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 71.6 bits (174), Expect = 1e-12
Identities = 85/298 (28%), Positives = 99/298 (33%), Gaps = 60/298 (20%)
Query: 85 SSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPPGFFQPFMSPRYPGGPR-PPLRIPN 143
SS D S +PS + GN P GP P G +P P PG P+ PP + N
Sbjct: 14 SSAQNLNEDVSQEESPSLIAGN-------PQGPSPQGGNKPQGPPPPPGKPQGPPPQGGN 66
Query: 144 QALGGVPGSQPLLPSGMD---------PTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGG 194
+ G P +P P P + QG P GG + PP P GP GG
Sbjct: 67 KPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGG 126
Query: 195 AMRPPLNALGGPGMPGMNMGP------------GGGRP-WPNPTNANSIPYSSASPGNYV 241
N GP PG GP G+P P P N PG
Sbjct: 127 ------NRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQ 180
Query: 242 GPPGGGG-------PPGTPIMPSP-ADSTNSGDNMYTLMNAVPP--------GPNRPNFP 285
GPP GG PPG P P P D + S + PP P P P
Sbjct: 181 GPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPPGKP 240
Query: 286 MGPGSDGPMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMGGN 343
GP G G G G S S SP PG P+ + GN
Sbjct: 241 QGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSP--------PGKPQGPPQQEGN 290
Score = 57.4 bits (137), Expect = 2e-08
Identities = 60/203 (29%), Positives = 66/203 (32%), Gaps = 54/203 (26%)
Query: 100 PSPVLGNIPPGD----GMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPL 155
P P GN P G G P GP P G + P GP P P + G P
Sbjct: 161 PPPQGGNQPQGPPPPPGKPQGPPPQG-------GKKPQGPPP----PGKPQGPPPQGDKS 209
Query: 156 LPSGMDPTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGP 215
S P + QG P GG + PP P GP GG N GP PG GP
Sbjct: 210 RSSQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGG------NKPQGPPPPGKPQGP 263
Query: 216 GGGRPWPNPTNANSIPYSSAS-PGNYVGPP--GGGGPPGTPIMPSPADSTNSGDNMYTLM 272
P S S+ S PG GPP G P G P
Sbjct: 264 --------PAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPP------------------- 296
Query: 273 NAVPPGPNRPNFPMGPGSDGPMG 295
PP P P P + P G
Sbjct: 297 ---PPAGGNPQQPQAPPAGQPQG 316
Score = 47.0 bits (110), Expect = 3e-05
Identities = 41/120 (34%), Positives = 48/120 (40%), Gaps = 15/120 (12%)
Query: 108 PPGDGMPVGPVPPGFFQPFMSPRYPGGPR-PPLRIPNQALGGVPGSQPLLPSGMDPTRQQ 166
PPG P GP P G QP P PG P+ PP + N+ G P +P P ++ Q
Sbjct: 215 PPGK--PQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQ 272
Query: 167 ------GHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRP 220
G P G P Q P+G P N PP GP P P GGRP
Sbjct: 273 SARSPPGKPQ-GPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRP-----PQGGRP 326
Score = 42.0 bits (97), Expect = 9e-04
Identities = 40/116 (34%), Positives = 45/116 (38%), Gaps = 23/116 (19%)
Query: 100 PSPVLGNIPPGD----GMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPL 155
P P GN P G G P GP P G +P P PG P+ P A GG
Sbjct: 222 PPPQGGNQPQGPPPPPGKPQGPPPQGGNKP-QGPPPPGKPQGP-----PAQGGSKSQSAR 275
Query: 156 LPSG--MDPTRQQGH-------PNMGGPMQRMTPPRGMVPLG---PQNYGGAMRPP 199
P G P +Q+G+ P G P Q PP G P G P G RPP
Sbjct: 276 SPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQ-PQGPPRPPQGGRPSRPP 330
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 70.9 bits (172), Expect = 2e-12
Identities = 76/256 (29%), Positives = 90/256 (35%), Gaps = 28/256 (10%)
Query: 100 PSPVLGNIPPG----DGMPVGPVP---PGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGS 152
P PV PG DG P P PG P S PG P P Q + G PG
Sbjct: 410 PGPVGSPGLPGAIGTDGTPGAKGPTGSPGTSGPPGSAGPPGSPGPQGSTGPQGIRGQPGD 469
Query: 153 QPLLPSGMDPTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMN 212
P +P +G P G + PP GP+ G + PP +G G PG
Sbjct: 470 -PGVPGFKGEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPP-GPVGERGAPGNR 527
Query: 213 MGPGG-GRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTL 271
PG G P P P S+ P G PG G PG +P T
Sbjct: 528 GFPGSDGLPGPKGAQGERGPVGSSGPKGSQGDPGRPGEPG---LPGARGLTG-------- 576
Query: 272 MNAVPPGPNRPNFPMG-PGSDGPMGGLGGMESHHMNGSLG-----SGDMDSISKNSPNNM 325
N GP P+G PG DG G G + GS+G D N
Sbjct: 577 -NPGVQGPEGKLGPLGAPGEDGRPGPPGSIGIRGQPGSMGLPGPKGSSGDPGKPGEAGNA 635
Query: 326 SLSNQPGTPRDDGEMG 341
+ Q G P DGE+G
Sbjct: 636 GVPGQRGAPGKDGEVG 651
Score = 69.3 bits (168), Expect = 5e-12
Identities = 77/250 (30%), Positives = 93/250 (37%), Gaps = 31/250 (12%)
Query: 109 PGDGMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQA---LGGVPGSQ--PLLPSGMDPT 163
PGD P+GP+ G P P PG P R N G PG++ P P
Sbjct: 242 PGDPGPMGPI--GSRGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGARGFPGAPGLPGLK 299
Query: 164 RQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGM--NMGPGGGRPW 221
+GH + GP + P GP GAM P LG GMPG +GP G
Sbjct: 300 GHRGHKGLEGPKGEVGAPGSKGEAGPTGPMGAMGP----LGPRGMPGERGRLGPQGA--- 352
Query: 222 PNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTNS-------GDNMYTLMNA 274
P A+ +P P +G PG G PG P M A T + G T
Sbjct: 353 PGQRGAHGMP-GKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGET---- 407
Query: 275 VPPGP-NRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMDSI--SKNSPNNMSLSNQP 331
PPGP P P G+DG G G S +G GS + S + QP
Sbjct: 408 GPPGPVGSPGLPGAIGTDGTPGAKGPTGSPGTSGPPGSAGPPGSPGPQGSTGPQGIRGQP 467
Query: 332 GTPRDDGEMG 341
G P G G
Sbjct: 468 GDPGVPGFKG 477
Score = 62.0 bits (149), Expect = 8e-10
Identities = 74/247 (29%), Positives = 90/247 (36%), Gaps = 39/247 (15%)
Query: 110 GDGMPVGPVPPGFFQPFMSPRYPG--GPRPPLRIPNQ-ALGGVPGSQ-PLLPSGMDPTRQ 165
G+ P GP+ G P PG G P P Q G+PG P+ P G+ +
Sbjct: 321 GEAGPTGPM--GAMGPLGPRGMPGERGRLGPQGAPGQRGAHGMPGKPGPMGPLGIPGS-- 376
Query: 166 QGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPT 225
G P G P P GPQ G PP +G PG+PG +G G PT
Sbjct: 377 SGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPP-GPVGSPGLPGA-IGTDGTPGAKGPT 434
Query: 226 NANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNF- 284
SPG GPPG GPPG+ P P ST + P P P F
Sbjct: 435 G---------SPGTS-GPPGSAGPPGS---PGPQGSTGPQG-----IRGQPGDPGVPGFK 476
Query: 285 -PMGP-GSDGPMGGLGGMESHHMNGSLG-SGDMDSI-------SKNSPNNMSLSNQPGTP 334
GP G GP G G + G G GD ++ + +P N G P
Sbjct: 477 GEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLP 536
Query: 335 RDDGEMG 341
G G
Sbjct: 537 GPKGAQG 543
Score = 53.9 bits (128), Expect = 2e-07
Identities = 63/208 (30%), Positives = 74/208 (35%), Gaps = 27/208 (12%)
Query: 108 PPGDGMPVGPV-PPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQ 166
P G P GP+ PG P P G P R+ ++ G PG P +
Sbjct: 922 PAGAPGPAGPLGEPGKEGP---PGLRGDPGSHGRVGDRGPAGPPGG----PGDKGDPGED 974
Query: 167 GHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTN 226
G P GP P G G + P G GMPG+ GP G PT
Sbjct: 975 GQPGPDGPPG---------PAGTTGQRGIVGMP-GQRGERGMPGLP-GPAGTPGKVGPTG 1023
Query: 227 ANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPA--DSTNSGDN-MYTLMNAVPPGP-NRP 282
A P VGPPG GP G P PA D T D + + PGP P
Sbjct: 1024 ATG----DKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGERGDRGDPGPAGLP 1079
Query: 283 NFPMGPGSDGPMGGLGGMESHHMNGSLG 310
PG+ GP+G G GS G
Sbjct: 1080 GSQGAPGTPGPVGAPGDAGQRGDPGSRG 1107
Score = 52.0 bits (123), Expect = 8e-07
Identities = 66/232 (28%), Positives = 80/232 (34%), Gaps = 34/232 (14%)
Query: 119 PPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRM 178
PPG P S + PGG + G PG P++ G P GP
Sbjct: 88 PPGECCPVCS-QTPGGGNTNFGRGRKGQKGEPGLVPVVTGIRGRPGPAGPPGSQGPRGER 146
Query: 179 TPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSS---- 234
P P GPQ G G PG PG GP G P P + S P+S+
Sbjct: 147 GPKGRPGPRGPQGIDGEP-------GVPGQPGA-PGPPGHPSHPGP-DGLSRPFSAQMAG 197
Query: 235 ----ASPGNYVG-PPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPG 289
+ G+ VG PG GP G P P G A P GP P PG
Sbjct: 198 LDEKSGLGSQVGLMPGSVGPVG-PRGPQGLQGQQGG--------AGPTGP-----PGEPG 243
Query: 290 SDGPMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMG 341
GPMG +G G G D + +P + + PG G G
Sbjct: 244 DPGPMGPIGSRGPEGPPGKPGE-DGEPGRNGNPGEVGFAGSPGARGFPGAPG 294
Score = 52.0 bits (123), Expect = 8e-07
Identities = 75/264 (28%), Positives = 87/264 (32%), Gaps = 68/264 (25%)
Query: 83 EHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVG----PVPPGFFQPFMSPRYPGGPRPP 138
E +E A +D A P P LG PPG P G P P G P S PG
Sbjct: 784 EKGAEGTAGND-GARGLPGP-LG--PPGPAGPTGEKGEPGPRGLVGPPGSRGNPGS---- 835
Query: 139 LRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRP 198
R N G V + P P G + G P G P GPQ G+ P
Sbjct: 836 -RGENGPTGAVGFAGPQGPDGQPGVK--GEPGEPGQKGDAGSP------GPQGLAGSPGP 886
Query: 199 PLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSP 258
G G+PG+ GGR P A P S+ VGPPG G PG
Sbjct: 887 H----GPNGVPGLK----GGRGTQGPPGATGFPGSAGR----VGPPGPAGAPG------- 927
Query: 259 ADSTNSGDNMYTLMNAVPPGPNRPNFPMG-PGSDGPMGGLGGMESHHMNGSLGSGDMDSI 317
P P+G PG +GP G G SH G G
Sbjct: 928 -----------------------PAGPLGEPGKEGPPGLRGDPGSHGRVGDRGPAG---- 960
Query: 318 SKNSPNNMSLSNQPGTPRDDGEMG 341
P + + G P DG G
Sbjct: 961 PPGGPGDKGDPGEDGQPGPDGPPG 984
Score = 50.8 bits (120), Expect = 2e-06
Identities = 75/246 (30%), Positives = 91/246 (36%), Gaps = 58/246 (23%)
Query: 100 PSPVLGNIPP----GDGMPVGPV-PPGFFQPFMSPRYPGGPRPPLRIPNQ--ALG----- 147
P+ G + P GD P GPV PPG P P P GP P + A+G
Sbjct: 1012 PAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPG-PEGPAGNDGTPGRDGAVGERGDR 1070
Query: 148 GVPGSQPLLPSGMDPTRQQGHPNMGGPM-------QRMTP-PRGMVPLGPQNYGGAMRPP 199
G PG P+G+ + QG P GP+ QR P RG P+GP G
Sbjct: 1071 GDPG-----PAGLPGS--QGAPGTPGPVGAPGDAGQRGDPGSRG--PIGPPGRAGK---- 1117
Query: 200 LNALGGPGMPGMNMGPGGGRP---------------WPNPTNANSIPYSSASPGNYV--G 242
L GP P + G G R P P N S+ PG + G
Sbjct: 1118 -RGLPGPQGPRGDKGDHGDRGDRGQKGHRGFTGLQGLPGPPGPNGEQGSAGIPGPFGPRG 1176
Query: 243 PPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMG----GLG 298
PPG GP G P P ++ A P GP P P PG GP G LG
Sbjct: 1177 PPGPVGPSGKEGNPGPLGPIGPPGVRGSVGEAGPEGP--PGEPGPPGPPGPPGHLTAALG 1234
Query: 299 GMESHH 304
+ H+
Sbjct: 1235 DIMGHY 1240
Score = 48.9 bits (115), Expect = 7e-06
Identities = 66/245 (26%), Positives = 84/245 (34%), Gaps = 52/245 (21%)
Query: 112 GMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLL-PSGM--DPTRQQGH 168
G P P G P +P G P PP I + G PGS L P G DP +
Sbjct: 576 GNPGVQGPEGKLGPLGAPGEDGRPGPPGSI---GIRGQPGSMGLPGPKGSSGDPGKPGEA 632
Query: 169 PNMGGPMQRMTPPRG--MVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTN 226
N G P QR P + + P GP +G PG+ G G + P PT
Sbjct: 633 GNAGVPGQRGAPGKDGEVGPSGP-------------VGPPGLAGER----GEQGPPGPTG 675
Query: 227 ANSIPYSSASPGNYVGPPGGGGPPGTPIMPSP----------ADSTNSGDNMYTLMNAVP 276
+P GPPG GG PG +P + N G+ + +
Sbjct: 676 FQGLPGPP-------GPPGEGGKPGDQGVPGDPGAVGPLGPRGERGNPGERGEPGITGL- 727
Query: 277 PGPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRD 336
P G G DGP G G + G G M P ++ PG D
Sbjct: 728 --PGEKGMAGGHGPDGPKGSPGPSGTPGDTGPPGLQGM-------PGERGIAGTPGPKGD 778
Query: 337 DGEMG 341
G +G
Sbjct: 779 RGGIG 783
Score = 47.0 bits (110), Expect = 3e-05
Identities = 64/223 (28%), Positives = 78/223 (34%), Gaps = 33/223 (14%)
Query: 108 PPGDGMPVG----PVPPGFFQPFMSPRYPGGPRPPLRIPNQ----ALGGVPGSQPLLPSG 159
PPG+G G P PG P GPR P + + G+PG + + G
Sbjct: 685 PPGEGGKPGDQGVPGDPGAVGPL-------GPRGERGNPGERGEPGITGLPGEKGMA-GG 736
Query: 160 MDPTRQQGHPNMGGP--------MQRMTPPRGMVPL-GPQNYGGAMRPPLNALGGPGMPG 210
P +G P G +Q M RG+ GP+ G + A G G G
Sbjct: 737 HGPDGPKGSPGPSGTPGDTGPPGLQGMPGERGIAGTPGPKGDRGGIGEK-GAEGTAGNDG 795
Query: 211 MNMGPGG-GRPWP-NPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTN-SGDN 267
PG G P P PT P P VGPPG G PG+ P + +G
Sbjct: 796 ARGLPGPLGPPGPAGPTGEKGEP----GPRGLVGPPGSRGNPGSRGENGPTGAVGFAGPQ 851
Query: 268 MYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLG 310
V P P GS GP G G H NG G
Sbjct: 852 GPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPHGPNGVPG 894
Score = 46.6 bits (109), Expect = 3e-05
Identities = 61/214 (28%), Positives = 71/214 (33%), Gaps = 46/214 (21%)
Query: 152 SQPLLPSG-----MDPTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGP 206
+ P+ P G T G+ N G + G+VP+ G RP GP
Sbjct: 83 ADPVTPPGECCPVCSQTPGGGNTNFGRGRKGQKGEPGLVPVVTGIRG---RP------GP 133
Query: 207 GMPGMNMGPGGGRP---WPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSP----- 258
P + GP G R P P I PG PG GPPG P P P
Sbjct: 134 AGPPGSQGPRGERGPKGRPGPRGPQGIDGEPGVPGQ----PGAPGPPGHPSHPGPDGLSR 189
Query: 259 --------ADSTNSGDNMYTLMNAVPPGPNRPNFPMGP-GSDGPMGGLGGMESHHMNGSL 309
D + + LM PG P P GP G G GG G G
Sbjct: 190 PFSAQMAGLDEKSGLGSQVGLM----PGSVGPVGPRGPQGLQGQQGGAGPTGPPGEPGD- 244
Query: 310 GSGDMDSISKNSPNNMSLSNQPGTPRDDGEMGGN 343
G M I P PG P +DGE G N
Sbjct: 245 -PGPMGPIGSRGP-----EGPPGKPGEDGEPGRN 272
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 70.9 bits (172), Expect = 2e-12
Identities = 81/266 (30%), Positives = 95/266 (35%), Gaps = 61/266 (22%)
Query: 109 PGDGMPVGPVPPGFFQPFMSPRYPGGPRPPLRI-----------------PNQALGGVPG 151
PG G+P P P GF P + P PG P P RI P AL G PG
Sbjct: 704 PGIGLPGPPGPKGF--PGI-PGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPG 760
Query: 152 SQ--PLLPSGMDPTRQQGHPNMGGPMQR-----MTPPRGMVPLGPQNYGGAMRPPLNALG 204
P + P +G P GP R + P+G V GP G M PP
Sbjct: 761 PPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDV--GPNGQPGPMGPP----- 813
Query: 205 GPGMPGMNM-GPGGGRPWPNPTNA---NSIPYSSASPG----NYVGPPGGGGPPGTPIMP 256
G+PG+ + GP G P P + IP PG + GPPG G PG P P
Sbjct: 814 --GLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAP 871
Query: 257 SPADSTNSGDNMYTLMNAVPPG-PNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMD 315
P PPG P P G G G +G M G LG
Sbjct: 872 GPIG---------------PPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRS 916
Query: 316 SISKNSPNNMSLSNQPGTPRDDGEMG 341
+ + L QPG P GE G
Sbjct: 917 GV-PGLKGDDGLQGQPGLPGPTGEKG 941
Score = 67.4 bits (163), Expect = 2e-11
Identities = 78/255 (30%), Positives = 95/255 (37%), Gaps = 45/255 (17%)
Query: 109 PGDGMPVGPVPPGF--FQPFMSPR----YPGGPRPPLRIPNQALGGVPGSQPLLPSGMDP 162
PG +P P PPG F+ + P+ +PG P PP R L G+PG P
Sbjct: 751 PGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGR---TGLDGLPG----------P 797
Query: 163 TRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGP-GMPGMNMGPG-GGRP 220
G GPM P G+ +G Q G PP + GP G PG++ PG G P
Sbjct: 798 KGDVGPNGQPGPM----GPPGLPGIGVQ---GPPGPP--GIPGPIGQPGLHGIPGEKGDP 848
Query: 221 WPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPG-- 278
P + P SPG G PG GPPG+P +P A ++ + PPG
Sbjct: 849 GPPGLDVPGPPGERGSPG-IPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPP 907
Query: 279 -----PNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGS-------GDMDSISKNSPNNMS 326
P R P G DG G G GS G G MD S
Sbjct: 908 GPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKG 967
Query: 327 LSNQPGTPRDDGEMG 341
PG P G G
Sbjct: 968 EPGLPGIPGVSGPKG 982
Score = 66.6 bits (161), Expect = 3e-11
Identities = 86/280 (30%), Positives = 103/280 (36%), Gaps = 64/280 (22%)
Query: 108 PPGD-GMPVGPVPPGFFQPFMSPRYPG--------------------GPRPPLRIPNQAL 146
PPG+ G P P PG P SP PG GP PL IP ++
Sbjct: 858 PPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRS- 916
Query: 147 GGVPG--------SQPLLPSGMDPTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRP 198
GVPG QP LP +G P + GP M P LG + G
Sbjct: 917 -GVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNL----LGSKGEKGEP-- 969
Query: 199 PLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPS- 257
G PG+PG++ GP G + P P S PG GPPG G PG P P
Sbjct: 970 -----GLPGIPGVS-GPKGYQGLPGDPGQ---PGLSGQPG-LPGPPGPKGNPGLPGQPGL 1019
Query: 258 ---PADSTNSGDNMYTLMNAV--PPGPNR-PNFPMGPGSDGPMGGLG--GMESHHMNGSL 309
P GD + V PPGP+ P P PG G G G G+ S + G
Sbjct: 1020 IGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLP 1079
Query: 310 GSGDMDSIS--------KNSPNNMSLSNQPGTPRDDGEMG 341
G + K S + L PGTP G+ G
Sbjct: 1080 GPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPG 1119
Score = 65.5 bits (158), Expect = 7e-11
Identities = 70/239 (29%), Positives = 89/239 (37%), Gaps = 41/239 (17%)
Query: 107 IPPGDGMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQ 166
+P G P P P G P +P PG P P +GG
Sbjct: 1120 LPGFPGTPGPPGPKGISGPPGNPGLPGEPGP--------VGG-----------------G 1154
Query: 167 GHPNMGGPM-QRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPT 225
GHP GP ++ P + +P G +P G PG+PG++ G G P
Sbjct: 1155 GHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGLS-GQKGDGGLPGIP 1213
Query: 226 NANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFP 285
+P PG + G PG GPPG P P PA G N P GP P P
Sbjct: 1214 GNPGLPGPKGEPG-FHGFPGVQGPPGPPGSPGPALEGPKG-------NPGPQGP--PGRP 1263
Query: 286 MGPGSDGPMG--GLGGMESHHMN-GSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMG 341
PG +GP G G GG++ N G G + + K L PG P +G G
Sbjct: 1264 GLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGL-KGDQGPPGLQGNPGRPGLNGMKG 1321
Score = 65.1 bits (157), Expect = 9e-11
Identities = 70/247 (28%), Positives = 85/247 (34%), Gaps = 37/247 (14%)
Query: 108 PPG----DGMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPT 163
PPG G P P PG P +PG P PP G+PG P+G
Sbjct: 1129 PPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPG-----PAGQKG- 1182
Query: 164 RQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPG------- 216
+ G P G P P G+ L Q G + G PG+PG PG
Sbjct: 1183 -EPGQPGFGNP-----GPPGLPGLSGQKGDGGLP---GIPGNPGLPGPKGEPGFHGFPGV 1233
Query: 217 GGRPWP--NPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNA 274
G P P +P A P + P G PG GP G P +P N
Sbjct: 1234 QGPPGPPGSPGPALEGPKGNPGPQGPPGRPGLPGPEGPPGLPGNGGIKGEKGN------- 1286
Query: 275 VPPGPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTP 334
P P P P G GP G G +NG G + + P S PG+
Sbjct: 1287 -PGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGV-PGFPGMKGPSGVPGSA 1344
Query: 335 RDDGEMG 341
+GE G
Sbjct: 1345 GPEGEPG 1351
Score = 61.6 bits (148), Expect = 1e-09
Identities = 79/278 (28%), Positives = 93/278 (33%), Gaps = 72/278 (25%)
Query: 108 PPG-------DGMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGM 160
PPG DG+P P P G P P +PG P G+PG +P
Sbjct: 70 PPGPRGQKGDDGIPGPPGPKGIRGPPGLPGFPGTP------------GLPG----MPGHD 113
Query: 161 DPTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMN-------- 212
QG P G P G + G PP G PG+PGM
Sbjct: 114 GAPGPQGIPGCNGTKGERGFP------GSPGFPGLQGPP----GPPGIPGMKGEPGSIIM 163
Query: 213 ---MGPGGGRPWPNPTNANSIPYSSASPGNY--VGPPGGGGPPGTPIMPSPADSTNSGDN 267
GP G +P P +P + PG GPPG GPPG P +P P N G N
Sbjct: 164 SSLPGPKGNPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGP--KGNMGLN 221
Query: 268 MYTLMNAV-------PPGP-------NRP---NFPMG----PGSDGPMG--GLGGMESHH 304
PPGP RP F G PG GP G G+ G
Sbjct: 222 FQGPKGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGDQGLPGDRGPPGPPGIRGPPGPP 281
Query: 305 MNGSLGSGDMDSISK-NSPNNMSLSNQPGTPRDDGEMG 341
G+ K P + QPG P G+ G
Sbjct: 282 GGEKGEKGEQGEPGKRGKPGKDGENGQPGIPGLPGDPG 319
Score = 60.1 bits (144), Expect = 3e-09
Identities = 78/276 (28%), Positives = 94/276 (34%), Gaps = 39/276 (14%)
Query: 93 DYSAAAAPSPVLGNIPPGDGMPVGPVPPGFFQPFMSPRY------PGGPRPP-LRIP--- 142
D P P+ PG G+ P PPG P P G P PP L +P
Sbjct: 800 DVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPP 859
Query: 143 -NQALGGVPGSQ-PLLPSGM----DPTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGG-- 194
+ G+PG+ P+ P G G P G M M PP PLG G
Sbjct: 860 GERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVP 919
Query: 195 AMRPPLNALGGPGMPGMNMGPGG-------GRPWPNPTNANSIPYSSASPGNYVGPPGGG 247
++ G PG+PG G G P P N PG G PG
Sbjct: 920 GLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPG-LPGIPGVS 978
Query: 248 GPPGTPIMP-SPADSTNSGDNMYTLMNAVPPGP-NRPNFPMGPGSDGPMGGLGGMESHHM 305
GP G +P P SG PPGP P P PG GP G G +
Sbjct: 979 GPKGYQGLPGDPGQPGLSGQPGL----PGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGF 1034
Query: 306 NGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMG 341
G G + P + QPG+P G+ G
Sbjct: 1035 PGPQG-------VEGPPGPSGVPGQPGSPGLPGQKG 1063
Score = 59.3 bits (142), Expect = 5e-09
Identities = 70/263 (26%), Positives = 94/263 (35%), Gaps = 37/263 (14%)
Query: 108 PPG-DGMPVGPV---PPGFFQPFMSPR----YPGGPRPPLRIPNQALGGVPGSQP----- 154
PPG DG P P PPG P + P PG P PP ++ L G G +
Sbjct: 421 PPGLDGQPGAPGLPGPPGPAGPHIPPSDEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDT 480
Query: 155 ---LLPSGMD-PTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPG 210
+ +G+ P Q G P + GP + P G + GA P G PG+PG
Sbjct: 481 CFNCIGTGISGPPGQPGLPGLPGPPGSLGFPGQK---GEKGQAGATGPK----GLPGIPG 533
Query: 211 MNMGPGGGRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPS-------PADSTN 263
PG P + + P G +G PG G PG P P P
Sbjct: 534 APGAPGFPGSKGEPGDILTFPGMKGDKGE-LGSPGAPGLPGLPGTPGQDGLPGLPGPKGE 592
Query: 264 SGDNMYTLMNAVPPGPNRPNFP-----MGPGSDGPMGGLGGMESHHMNGSLGSGDMDSIS 318
G + P P P P MGP GP G +G + G+ G +
Sbjct: 593 PGGITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPK 652
Query: 319 KNSPNNMSLSNQPGTPRDDGEMG 341
+ ++ +PG P + G G
Sbjct: 653 GDPGQTITQPGKPGLPGNPGRDG 675
Score = 57.4 bits (137), Expect = 2e-08
Identities = 73/251 (29%), Positives = 89/251 (35%), Gaps = 45/251 (17%)
Query: 108 PPGD-GMPVGPVPPGFFQP-----------FMSPRYPGGPRPPLRIPNQ-ALGGVPGSQP 154
PPG G P P PG P F P+ GP P +P Q G+PG +
Sbjct: 1004 PPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKG 1063
Query: 155 LLPSGMDPTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNAL----GGPGMPG 210
G G P + GP + P P P G P L L G G PG
Sbjct: 1064 --DKGDPGISSIGLPGLPGP--KGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPG 1119
Query: 211 MNMGPGGGRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYT 270
+ PG P P P + P + PG GP GGGG PG P P + G +
Sbjct: 1120 LPGFPGTPGP-PGPKGISGPPGNPGLPGE-PGPVGGGGHPGQP--GPPGEKGKPGQDGIP 1175
Query: 271 LMNAVPPGPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMSLSNQ 330
P +P F G+ GP G G ++G G G + I N
Sbjct: 1176 GPAGQKGEPGQPGF----GNPGPPGLPG------LSGQKGDGGLPGIPGN---------- 1215
Query: 331 PGTPRDDGEMG 341
PG P GE G
Sbjct: 1216 PGLPGPKGEPG 1226
Score = 57.0 bits (136), Expect = 3e-08
Identities = 66/204 (32%), Positives = 79/204 (38%), Gaps = 41/204 (20%)
Query: 146 LGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGG 205
L G PG P P G P Q+G + GP P+G+ GP G P G
Sbjct: 61 LPGFPG--PEGPPG--PRGQKGDDGIPGP----PGPKGI--RGPPGLPGFPGTP----GL 106
Query: 206 PGMPGMNMGPGG-GRPWPNPTNAN-SIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTN 263
PGMPG + PG G P N T P S PG GPPG PPG P M
Sbjct: 107 PGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPG-LQGPPG---PPGIPGM-------- 154
Query: 264 SGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMDSISKNSPN 323
G+ +M+++P P +P PG G G G + G +G P
Sbjct: 155 KGEPGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTG------IPGPIGP-------PGPPG 201
Query: 324 NMSLSNQPGTPRDDGEMGGNFLNP 347
M PG P G MG NF P
Sbjct: 202 LMGPPGPPGLPGPKGNMGLNFQGP 225
Score = 56.2 bits (134), Expect = 4e-08
Identities = 69/243 (28%), Positives = 84/243 (34%), Gaps = 53/243 (21%)
Query: 108 PPGDGMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQG 167
PPG + P PPG F R G P I +PG P G+D Q G
Sbjct: 387 PPGAAVMGPPGPPG----FPGERGQKGDEGPPGI------SIPG-----PPGLD--GQPG 429
Query: 168 HPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPG--------GGR 219
P + GP P GP PP + + PG PG PG G +
Sbjct: 430 APGLPGPPG---------PAGPH------IPPSDEICEPGPPGPPGSPGDKGLQGEQGVK 474
Query: 220 PWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMP-SPADSTNSGDNMYTLMNAVPPG 278
T N I + P G PG GPPG+ P + +G + +P
Sbjct: 475 GDKGDTCFNCIGTGISGPPGQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGA 534
Query: 279 PNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDG 338
P P FP G G + GM+ G LG SP L PGTP DG
Sbjct: 535 PGAPGFPGSKGEPGDILTFPGMKGD--KGELG----------SPGAPGLPGLPGTPGQDG 582
Query: 339 EMG 341
G
Sbjct: 583 LPG 585
Score = 54.3 bits (129), Expect = 2e-07
Identities = 70/246 (28%), Positives = 89/246 (36%), Gaps = 57/246 (23%)
Query: 112 GMPVGPVPPGFFQPFMSPRYPGGPRPPLRIP----NQALGGVPGSQPLLPSGMDPTRQQG 167
G+P P PGF P G P L P ++ G PG+ P LP Q G
Sbjct: 530 GIPGAPGAPGF------PGSKGEPGDILTFPGMKGDKGELGSPGA-PGLPGLPGTPGQDG 582
Query: 168 HPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGM--NMGPGGGRPWPNPT 225
P + GP P G+ + G PP G PG+PG+ N+GP G + P
Sbjct: 583 LPGLPGPKGE---PGGIT------FKGERGPP----GNPGLPGLPGNIGPMGPPGFGPP- 628
Query: 226 NANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFP 285
P G G G PG P +P P GD T+ P +P P
Sbjct: 629 ----------GPVGEKGIQGVAGNPGQPGIPGP-----KGDPGQTITQ-----PGKPGLP 668
Query: 286 MGPGSDGPMG-----GLGGMES-HHMNGSLGSGDMDSISKNSPNN----MSLSNQPGTPR 335
PG DG +G GL G + GS G + I P + PG P
Sbjct: 669 GNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPG 728
Query: 336 DDGEMG 341
G +G
Sbjct: 729 TPGRIG 734
Score = 51.2 bits (121), Expect = 1e-06
Identities = 76/266 (28%), Positives = 90/266 (33%), Gaps = 65/266 (24%)
Query: 91 FHDYSAAAAPSPVLGNIPPGDGMPVGPVPPGFFQPFMSPRYPG--GPRPPLRIPNQALGG 148
FH + P PPG P P G P P PG GP P +P GG
Sbjct: 1227 FHGFPGVQGPPG-----PPGSPGPALEGPKGNPGPQGPPGRPGLPGPEGPPGLPGN--GG 1279
Query: 149 VPGS-----QPLLPS------GMDPTRQQGHPNMGGPMQRMTPPRGM--VPLGPQNYGGA 195
+ G QP LP P QG+P G + M G+ VP P G +
Sbjct: 1280 IKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPG-LNGMKGDPGLPGVPGFPGMKGPS 1338
Query: 196 MRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIM 255
P + G G PG+ +GP G P P+ + I A P G PG G PG
Sbjct: 1339 GVP--GSAGPEGEPGL-IGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPG---- 1391
Query: 256 PSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMD 315
P GP P GP D GL G + G+G
Sbjct: 1392 --------------------PQGPQGLPGPTGPPGDPGRNGLPGFD--------GAGG-- 1421
Query: 316 SISKNSPNNMSLSNQPGTPRDDGEMG 341
K P L QPGT DG G
Sbjct: 1422 --RKGDP---GLPGQPGTRGLDGPPG 1442
Score = 49.7 bits (117), Expect = 4e-06
Identities = 73/269 (27%), Positives = 92/269 (34%), Gaps = 58/269 (21%)
Query: 109 PGDGMPVGPVPPGFFQPFMSPRYPGGPR-------------PPLRIPNQALGGVPG--SQ 153
PGD P GP PG P P PGG + P + G+PG
Sbjct: 263 PGDRGPPGP--PGIRGP---PGPPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIPGLPGD 317
Query: 154 PLLPS--GMDPTR-QQGHPNMGGPMQRMTP---------PRGMVPL-------GPQNYGG 194
P P G D + Q+G GP + P +G + L G + + G
Sbjct: 318 PGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPG 377
Query: 195 AMRPPLNALGGPGMPGMN-MGPGGGRPWPNPTNANSIPYSSASPGNYV-GPPGGGGPPGT 252
PP G PG PG MGP G +P PG + GPPG G PG
Sbjct: 378 IQGPP----GLPGPPGAAVMGPPGPPGFPGERGQKG---DEGPPGISIPGPPGLDGQPGA 430
Query: 253 PIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSG 312
P +P P +G ++ PGP P P PG G G G + G G
Sbjct: 431 PGLPGPPGP--AGPHIPPSDEICEPGP--PGPPGSPGDKGLQGEQG------VKGDKGDT 480
Query: 313 DMDSISKNSPNNMSLSNQPGTPRDDGEMG 341
+ I PG P G +G
Sbjct: 481 CFNCIGTGISGPPGQPGLPGLPGPPGSLG 509
Score = 40.8 bits (94), Expect = 0.002
Identities = 44/152 (28%), Positives = 52/152 (34%), Gaps = 21/152 (13%)
Query: 102 PVLGNIPPGDGMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMD 161
P L +P GM PG P P G P PP L G G ++
Sbjct: 1323 PGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPP------GLPGPSGQSIIIKGDAG 1376
Query: 162 PTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPW 221
P G P + G P GPQ G PP + G G+PG + G GG +
Sbjct: 1377 PPGIPGQPGLKGLPG---------PQGPQGLPGPTGPPGDP-GRNGLPGFD-GAGGRKGD 1425
Query: 222 PNPTNANSIPYSSASPGNYVGPPGGGGPPGTP 253
P PG P G GPPG P
Sbjct: 1426 PGLPGQPGTRGLDGPPG----PDGLQGPPGPP 1453
Score = 30.8 bits (68), Expect = 2.0
Identities = 35/125 (28%), Positives = 39/125 (31%), Gaps = 13/125 (10%)
Query: 242 GPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMG-PGSDGPMGGLGGM 300
G PG G PG P P P PPGP P G PG G GL GM
Sbjct: 51 GFPGLEGHPGLPGFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGPPGLPGFPG-TPGLPGM 109
Query: 301 ESHH----------MNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMGGNFLNPFQS 350
H NG+ G S P PG P GE G ++
Sbjct: 110 PGHDGAPGPQGIPGCNGTKGERGFPG-SPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPG 168
Query: 351 ESYSP 355
+P
Sbjct: 169 PKGNP 173
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 70.9 bits (172), Expect = 2e-12
Identities = 81/266 (30%), Positives = 95/266 (35%), Gaps = 61/266 (22%)
Query: 109 PGDGMPVGPVPPGFFQPFMSPRYPGGPRPPLRI-----------------PNQALGGVPG 151
PG G+P P P GF P + P PG P P RI P AL G PG
Sbjct: 704 PGIGLPGPPGPKGF--PGI-PGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPG 760
Query: 152 SQ--PLLPSGMDPTRQQGHPNMGGPMQR-----MTPPRGMVPLGPQNYGGAMRPPLNALG 204
P + P +G P GP R + P+G V GP G M PP
Sbjct: 761 PPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDV--GPNGQPGPMGPP----- 813
Query: 205 GPGMPGMNM-GPGGGRPWPNPTNA---NSIPYSSASPG----NYVGPPGGGGPPGTPIMP 256
G+PG+ + GP G P P + IP PG + GPPG G PG P P
Sbjct: 814 --GLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAP 871
Query: 257 SPADSTNSGDNMYTLMNAVPPG-PNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMD 315
P PPG P P G G G +G M G LG
Sbjct: 872 GPIG---------------PPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRS 916
Query: 316 SISKNSPNNMSLSNQPGTPRDDGEMG 341
+ + L QPG P GE G
Sbjct: 917 GV-PGLKGDDGLQGQPGLPGPTGEKG 941
Score = 68.2 bits (165), Expect = 1e-11
Identities = 71/240 (29%), Positives = 90/240 (37%), Gaps = 40/240 (16%)
Query: 107 IPPGDGMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQ 166
+P G P P P G P +P PG P P +GG
Sbjct: 1120 LPGFPGTPGPPGPKGISGPPGNPGLPGEPGP--------VGG-----------------G 1154
Query: 167 GHPNMGGPM-QRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPT 225
GHP GP ++ P + +P G +P G PG+PG++ G G P
Sbjct: 1155 GHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGLS-GQKGDGGLPGIP 1213
Query: 226 NANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPG-PNRPNF 284
+P PG + G PG GPPG P P PA G N P G P RP F
Sbjct: 1214 GNPGLPGPKGEPG-FHGFPGVQGPPGPPGSPGPALEGPKG-------NPGPQGPPGRPGF 1265
Query: 285 PMGPGSDGPMG--GLGGMESHHMN-GSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMG 341
PG +GP G G GG++ N G G + + K L PG P +G G
Sbjct: 1266 QGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGL-KGDQGPPGLQGNPGRPGLNGMKG 1324
Score = 67.4 bits (163), Expect = 2e-11
Identities = 78/255 (30%), Positives = 95/255 (37%), Gaps = 45/255 (17%)
Query: 109 PGDGMPVGPVPPGF--FQPFMSPR----YPGGPRPPLRIPNQALGGVPGSQPLLPSGMDP 162
PG +P P PPG F+ + P+ +PG P PP R L G+PG P
Sbjct: 751 PGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGR---TGLDGLPG----------P 797
Query: 163 TRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGP-GMPGMNMGPG-GGRP 220
G GPM P G+ +G Q G PP + GP G PG++ PG G P
Sbjct: 798 KGDVGPNGQPGPM----GPPGLPGIGVQ---GPPGPP--GIPGPIGQPGLHGIPGEKGDP 848
Query: 221 WPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPG-- 278
P + P SPG G PG GPPG+P +P A ++ + PPG
Sbjct: 849 GPPGLDVPGPPGERGSPG-IPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPP 907
Query: 279 -----PNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGS-------GDMDSISKNSPNNMS 326
P R P G DG G G GS G G MD S
Sbjct: 908 GPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKG 967
Query: 327 LSNQPGTPRDDGEMG 341
PG P G G
Sbjct: 968 EPGLPGIPGVSGPKG 982
Score = 66.6 bits (161), Expect = 3e-11
Identities = 86/280 (30%), Positives = 103/280 (36%), Gaps = 64/280 (22%)
Query: 108 PPGD-GMPVGPVPPGFFQPFMSPRYPG--------------------GPRPPLRIPNQAL 146
PPG+ G P P PG P SP PG GP PL IP ++
Sbjct: 858 PPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRS- 916
Query: 147 GGVPG--------SQPLLPSGMDPTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRP 198
GVPG QP LP +G P + GP M P LG + G
Sbjct: 917 -GVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNL----LGSKGEKGEP-- 969
Query: 199 PLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPS- 257
G PG+PG++ GP G + P P S PG GPPG G PG P P
Sbjct: 970 -----GLPGIPGVS-GPKGYQGLPGDPGQ---PGLSGQPG-LPGPPGPKGNPGLPGQPGL 1019
Query: 258 ---PADSTNSGDNMYTLMNAV--PPGPNR-PNFPMGPGSDGPMGGLG--GMESHHMNGSL 309
P GD + V PPGP+ P P PG G G G G+ S + G
Sbjct: 1020 IGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLP 1079
Query: 310 GSGDMDSIS--------KNSPNNMSLSNQPGTPRDDGEMG 341
G + K S + L PGTP G+ G
Sbjct: 1080 GPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPG 1119
Score = 62.8 bits (151), Expect = 5e-10
Identities = 71/250 (28%), Positives = 85/250 (34%), Gaps = 40/250 (16%)
Query: 108 PPG----DGMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPT 163
PPG G P P PG P +PG P PP G+PG P+G
Sbjct: 1129 PPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPG-----PAGQKG- 1182
Query: 164 RQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMR--PPLNALGGP-------GMPGMNMG 214
+ G P G P P G+ L Q G + P L GP G PG+
Sbjct: 1183 -EPGQPGFGNP-----GPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGP 1236
Query: 215 PGG-GRPWPNPTNANSIPYSSASPGN--YVGPPGGGGPPGTPIMPSPADSTNSGDNMYTL 271
PG G P P P PG + G PG GPPG P G+
Sbjct: 1237 PGPPGSPGPALEGPKGNPGPQGPPGRPGFQGLPGPEGPPGLP-----------GNGGIKG 1285
Query: 272 MNAVPPGPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMSLSNQP 331
P P P P G GP G G +NG G + + P S P
Sbjct: 1286 EKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGV-PGFPGMKGPSGVP 1344
Query: 332 GTPRDDGEMG 341
G+ +GE G
Sbjct: 1345 GSAGPEGEPG 1354
Score = 61.6 bits (148), Expect = 1e-09
Identities = 79/278 (28%), Positives = 93/278 (33%), Gaps = 72/278 (25%)
Query: 108 PPG-------DGMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGM 160
PPG DG+P P P G P P +PG P G+PG +P
Sbjct: 70 PPGPRGQKGDDGIPGPPGPKGIRGPPGLPGFPGTP------------GLPG----MPGHD 113
Query: 161 DPTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMN-------- 212
QG P G P G + G PP G PG+PGM
Sbjct: 114 GAPGPQGIPGCNGTKGERGFP------GSPGFPGLQGPP----GPPGIPGMKGEPGSIIM 163
Query: 213 ---MGPGGGRPWPNPTNANSIPYSSASPGNY--VGPPGGGGPPGTPIMPSPADSTNSGDN 267
GP G +P P +P + PG GPPG GPPG P +P P N G N
Sbjct: 164 SSLPGPKGNPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGP--KGNMGLN 221
Query: 268 MYTLMNAV-------PPGP-------NRP---NFPMG----PGSDGPMG--GLGGMESHH 304
PPGP RP F G PG GP G G+ G
Sbjct: 222 FQGPKGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGDQGLPGDRGPPGPPGIRGPPGPP 281
Query: 305 MNGSLGSGDMDSISK-NSPNNMSLSNQPGTPRDDGEMG 341
G+ K P + QPG P G+ G
Sbjct: 282 GGEKGEKGEQGEPGKRGKPGKDGENGQPGIPGLPGDPG 319
Score = 60.1 bits (144), Expect = 3e-09
Identities = 78/276 (28%), Positives = 94/276 (34%), Gaps = 39/276 (14%)
Query: 93 DYSAAAAPSPVLGNIPPGDGMPVGPVPPGFFQPFMSPRY------PGGPRPP-LRIP--- 142
D P P+ PG G+ P PPG P P G P PP L +P
Sbjct: 800 DVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPP 859
Query: 143 -NQALGGVPGSQ-PLLPSGM----DPTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGG-- 194
+ G+PG+ P+ P G G P G M M PP PLG G
Sbjct: 860 GERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVP 919
Query: 195 AMRPPLNALGGPGMPGMNMGPGG-------GRPWPNPTNANSIPYSSASPGNYVGPPGGG 247
++ G PG+PG G G P P N PG G PG
Sbjct: 920 GLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPG-LPGIPGVS 978
Query: 248 GPPGTPIMP-SPADSTNSGDNMYTLMNAVPPGP-NRPNFPMGPGSDGPMGGLGGMESHHM 305
GP G +P P SG PPGP P P PG GP G G +
Sbjct: 979 GPKGYQGLPGDPGQPGLSGQPGL----PGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGF 1034
Query: 306 NGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMG 341
G G + P + QPG+P G+ G
Sbjct: 1035 PGPQG-------VEGPPGPSGVPGQPGSPGLPGQKG 1063
Score = 59.3 bits (142), Expect = 5e-09
Identities = 70/263 (26%), Positives = 94/263 (35%), Gaps = 37/263 (14%)
Query: 108 PPG-DGMPVGPV---PPGFFQPFMSPR----YPGGPRPPLRIPNQALGGVPGSQP----- 154
PPG DG P P PPG P + P PG P PP ++ L G G +
Sbjct: 421 PPGLDGQPGAPGLPGPPGPAGPHIPPSDEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDT 480
Query: 155 ---LLPSGMD-PTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPG 210
+ +G+ P Q G P + GP + P G + GA P G PG+PG
Sbjct: 481 CFNCIGTGISGPPGQPGLPGLPGPPGSLGFPGQK---GEKGQAGATGPK----GLPGIPG 533
Query: 211 MNMGPGGGRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPS-------PADSTN 263
PG P + + P G +G PG G PG P P P
Sbjct: 534 APGAPGFPGSKGEPGDILTFPGMKGDKGE-LGSPGAPGLPGLPGTPGQDGLPGLPGPKGE 592
Query: 264 SGDNMYTLMNAVPPGPNRPNFP-----MGPGSDGPMGGLGGMESHHMNGSLGSGDMDSIS 318
G + P P P P MGP GP G +G + G+ G +
Sbjct: 593 PGGITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPK 652
Query: 319 KNSPNNMSLSNQPGTPRDDGEMG 341
+ ++ +PG P + G G
Sbjct: 653 GDPGQTITQPGKPGLPGNPGRDG 675
Score = 57.4 bits (137), Expect = 2e-08
Identities = 73/251 (29%), Positives = 89/251 (35%), Gaps = 45/251 (17%)
Query: 108 PPGD-GMPVGPVPPGFFQP-----------FMSPRYPGGPRPPLRIPNQ-ALGGVPGSQP 154
PPG G P P PG P F P+ GP P +P Q G+PG +
Sbjct: 1004 PPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKG 1063
Query: 155 LLPSGMDPTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNAL----GGPGMPG 210
G G P + GP + P P P G P L L G G PG
Sbjct: 1064 --DKGDPGISSIGLPGLPGP--KGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPG 1119
Query: 211 MNMGPGGGRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYT 270
+ PG P P P + P + PG GP GGGG PG P P + G +
Sbjct: 1120 LPGFPGTPGP-PGPKGISGPPGNPGLPGE-PGPVGGGGHPGQP--GPPGEKGKPGQDGIP 1175
Query: 271 LMNAVPPGPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMSLSNQ 330
P +P F G+ GP G G ++G G G + I N
Sbjct: 1176 GPAGQKGEPGQPGF----GNPGPPGLPG------LSGQKGDGGLPGIPGN---------- 1215
Query: 331 PGTPRDDGEMG 341
PG P GE G
Sbjct: 1216 PGLPGPKGEPG 1226
Score = 57.0 bits (136), Expect = 3e-08
Identities = 66/204 (32%), Positives = 79/204 (38%), Gaps = 41/204 (20%)
Query: 146 LGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGG 205
L G PG P P G P Q+G + GP P+G+ GP G P G
Sbjct: 61 LPGFPG--PEGPPG--PRGQKGDDGIPGP----PGPKGI--RGPPGLPGFPGTP----GL 106
Query: 206 PGMPGMNMGPGG-GRPWPNPTNAN-SIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTN 263
PGMPG + PG G P N T P S PG GPPG PPG P M
Sbjct: 107 PGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPG-LQGPPG---PPGIPGM-------- 154
Query: 264 SGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMDSISKNSPN 323
G+ +M+++P P +P PG G G G + G +G P
Sbjct: 155 KGEPGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTG------IPGPIGP-------PGPPG 201
Query: 324 NMSLSNQPGTPRDDGEMGGNFLNP 347
M PG P G MG NF P
Sbjct: 202 LMGPPGPPGLPGPKGNMGLNFQGP 225
Score = 56.2 bits (134), Expect = 4e-08
Identities = 69/243 (28%), Positives = 84/243 (34%), Gaps = 53/243 (21%)
Query: 108 PPGDGMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQG 167
PPG + P PPG F R G P I +PG P G+D Q G
Sbjct: 387 PPGAAVMGPPGPPG----FPGERGQKGDEGPPGI------SIPG-----PPGLD--GQPG 429
Query: 168 HPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPG--------GGR 219
P + GP P GP PP + + PG PG PG G +
Sbjct: 430 APGLPGPPG---------PAGPH------IPPSDEICEPGPPGPPGSPGDKGLQGEQGVK 474
Query: 220 PWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMP-SPADSTNSGDNMYTLMNAVPPG 278
T N I + P G PG GPPG+ P + +G + +P
Sbjct: 475 GDKGDTCFNCIGTGISGPPGQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGA 534
Query: 279 PNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDG 338
P P FP G G + GM+ G LG SP L PGTP DG
Sbjct: 535 PGAPGFPGSKGEPGDILTFPGMKGD--KGELG----------SPGAPGLPGLPGTPGQDG 582
Query: 339 EMG 341
G
Sbjct: 583 LPG 585
Score = 54.3 bits (129), Expect = 2e-07
Identities = 70/246 (28%), Positives = 89/246 (36%), Gaps = 57/246 (23%)
Query: 112 GMPVGPVPPGFFQPFMSPRYPGGPRPPLRIP----NQALGGVPGSQPLLPSGMDPTRQQG 167
G+P P PGF P G P L P ++ G PG+ P LP Q G
Sbjct: 530 GIPGAPGAPGF------PGSKGEPGDILTFPGMKGDKGELGSPGA-PGLPGLPGTPGQDG 582
Query: 168 HPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGM--NMGPGGGRPWPNPT 225
P + GP P G+ + G PP G PG+PG+ N+GP G + P
Sbjct: 583 LPGLPGPKGE---PGGIT------FKGERGPP----GNPGLPGLPGNIGPMGPPGFGPP- 628
Query: 226 NANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFP 285
P G G G PG P +P P GD T+ P +P P
Sbjct: 629 ----------GPVGEKGIQGVAGNPGQPGIPGP-----KGDPGQTITQ-----PGKPGLP 668
Query: 286 MGPGSDGPMG-----GLGGMES-HHMNGSLGSGDMDSISKNSPNN----MSLSNQPGTPR 335
PG DG +G GL G + GS G + I P + PG P
Sbjct: 669 GNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPG 728
Query: 336 DDGEMG 341
G +G
Sbjct: 729 TPGRIG 734
Score = 50.1 bits (118), Expect = 3e-06
Identities = 76/269 (28%), Positives = 90/269 (33%), Gaps = 68/269 (25%)
Query: 91 FHDYSAAAAPSPVLGNIPPGDGMPVGPVPPGFFQPFMSPRYPG-----GPRPPLRIPNQA 145
FH + P PPG P P G P P PG GP P +P
Sbjct: 1227 FHGFPGVQGPPG-----PPGSPGPALEGPKGNPGPQGPPGRPGFQGLPGPEGPPGLPGN- 1280
Query: 146 LGGVPGS-----QPLLPS------GMDPTRQQGHPNMGGPMQRMTPPRGM--VPLGPQNY 192
GG+ G QP LP P QG+P G + M G+ VP P
Sbjct: 1281 -GGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPG-LNGMKGDPGLPGVPGFPGMK 1338
Query: 193 GGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGT 252
G + P + G G PG+ +GP G P P+ + I A P G PG G PG
Sbjct: 1339 GPSGVP--GSAGPEGEPGL-IGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPG- 1394
Query: 253 PIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSG 312
P GP P GP D GL G + G+G
Sbjct: 1395 -----------------------PQGPQGLPGPTGPPGDPGRNGLPGFD--------GAG 1423
Query: 313 DMDSISKNSPNNMSLSNQPGTPRDDGEMG 341
K P L QPGT DG G
Sbjct: 1424 G----RKGDP---GLPGQPGTRGLDGPPG 1445
Score = 49.7 bits (117), Expect = 4e-06
Identities = 73/269 (27%), Positives = 92/269 (34%), Gaps = 58/269 (21%)
Query: 109 PGDGMPVGPVPPGFFQPFMSPRYPGGPR-------------PPLRIPNQALGGVPG--SQ 153
PGD P GP PG P P PGG + P + G+PG
Sbjct: 263 PGDRGPPGP--PGIRGP---PGPPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIPGLPGD 317
Query: 154 PLLPS--GMDPTR-QQGHPNMGGPMQRMTP---------PRGMVPL-------GPQNYGG 194
P P G D + Q+G GP + P +G + L G + + G
Sbjct: 318 PGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPG 377
Query: 195 AMRPPLNALGGPGMPGMN-MGPGGGRPWPNPTNANSIPYSSASPGNYV-GPPGGGGPPGT 252
PP G PG PG MGP G +P PG + GPPG G PG
Sbjct: 378 IQGPP----GLPGPPGAAVMGPPGPPGFPGERGQKG---DEGPPGISIPGPPGLDGQPGA 430
Query: 253 PIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSG 312
P +P P +G ++ PGP P P PG G G G + G G
Sbjct: 431 PGLPGPPGP--AGPHIPPSDEICEPGP--PGPPGSPGDKGLQGEQG------VKGDKGDT 480
Query: 313 DMDSISKNSPNNMSLSNQPGTPRDDGEMG 341
+ I PG P G +G
Sbjct: 481 CFNCIGTGISGPPGQPGLPGLPGPPGSLG 509
Score = 40.8 bits (94), Expect = 0.002
Identities = 44/152 (28%), Positives = 52/152 (34%), Gaps = 21/152 (13%)
Query: 102 PVLGNIPPGDGMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMD 161
P L +P GM PG P P G P PP L G G ++
Sbjct: 1326 PGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPP------GLPGPSGQSIIIKGDAG 1379
Query: 162 PTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPW 221
P G P + G P GPQ G PP + G G+PG + G GG +
Sbjct: 1380 PPGIPGQPGLKGLPG---------PQGPQGLPGPTGPPGDP-GRNGLPGFD-GAGGRKGD 1428
Query: 222 PNPTNANSIPYSSASPGNYVGPPGGGGPPGTP 253
P PG P G GPPG P
Sbjct: 1429 PGLPGQPGTRGLDGPPG----PDGLQGPPGPP 1456
Score = 30.8 bits (68), Expect = 2.0
Identities = 35/125 (28%), Positives = 39/125 (31%), Gaps = 13/125 (10%)
Query: 242 GPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMG-PGSDGPMGGLGGM 300
G PG G PG P P P PPGP P G PG G GL GM
Sbjct: 51 GFPGLEGHPGLPGFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGPPGLPGFPG-TPGLPGM 109
Query: 301 ESHH----------MNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMGGNFLNPFQS 350
H NG+ G S P PG P GE G ++
Sbjct: 110 PGHDGAPGPQGIPGCNGTKGERGFPG-SPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPG 168
Query: 351 ESYSP 355
+P
Sbjct: 169 PKGNP 173
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 70.5 bits (171), Expect = 2e-12
Identities = 86/275 (31%), Positives = 102/275 (37%), Gaps = 57/275 (20%)
Query: 96 AAAAPS----PVLGNIPPGDGMPVGPVPPGFFQPFMSPRYPG--GPRPPLRIP------- 142
AA AP P +P G+ P PPGF +P + PG G R P +P
Sbjct: 268 AAGAPGQPGIPGTKGLPGAPGIAGPPGPPGFGKPGL----PGLKGERGPAGLPGGPGAKG 323
Query: 143 NQALGGVPGSQPLL--PSGMDPTRQQGHPNMGGPMQRMTPPRGMV-PLGPQNYGGAMRPP 199
Q G+PG L P M P +G P G + P+G P GP Y GA +
Sbjct: 324 EQGPAGLPGKPGLTGPPGNMGPQGPKGIPGSHG----LPGPKGETGPAGPAGYPGA-KGE 378
Query: 200 LNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPA 259
+ G G PG PG P NP PG G PG GGPPG P PA
Sbjct: 379 RGSPGSDGKPGYPGKPGLDGPKGNP----------GLPGP-KGDPGVGGPPGLPGPVGPA 427
Query: 260 DSTN-SGDNMYTLMNAVP--PG-------PNRPNFPMG---PGSDGPMGGLGGMESHHMN 306
+ G N P PG P P FP PGS GP G G+ + +N
Sbjct: 428 GAKGMPGHNGEAGPRGAPGIPGTRGPIGPPGIPGFPGSKGDPGSPGPPGP-AGIATKGLN 486
Query: 307 GSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMG 341
G G P S +PG P G G
Sbjct: 487 GPTG-------PPGPPGPRGHSGEPGLPGPPGPPG 514
Score = 64.3 bits (155), Expect = 2e-10
Identities = 73/240 (30%), Positives = 93/240 (38%), Gaps = 46/240 (19%)
Query: 109 PGDGMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGH 168
PG+ P+GP PG P+ P G R P I G PG QP +P G
Sbjct: 240 PGEMGPIGP--PG-------PQGPPGERGPEGIGKPGAAGAPG-QPGIPGTKG---LPGA 286
Query: 169 PNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGP-GMPGMNMGPGGGRPWPNPTNA 227
P + GP GP +G P L GP G+PG GPG + P
Sbjct: 287 PGIAGPP------------GPPGFGKPGLPGLKGERGPAGLPG---GPGA-KGEQGPAGL 330
Query: 228 NSIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTN-SGDNMYTLMNAV---PPGPNRPN 283
P + PGN +GP G G PG+ +P P T +G Y P +P
Sbjct: 331 PGKPGLTGPPGN-MGPQGPKGIPGSHGLPGPKGETGPAGPAGYPGAKGERGSPGSDGKPG 389
Query: 284 FPMGPGSDGPMG--GLGGMESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMG 341
+P PG DGP G GL G + G G G + P + + G P +GE G
Sbjct: 390 YPGKPGLDGPKGNPGLPGPK-----GDPGVGGPPGL----PGPVGPAGAKGMPGHNGEAG 440
Score = 55.8 bits (133), Expect = 6e-08
Identities = 50/161 (31%), Positives = 58/161 (36%), Gaps = 32/161 (19%)
Query: 108 PPGDGMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQG 167
P DG P P PG P +P PG P +GG PG LP + P +G
Sbjct: 382 PGSDGKPGYPGKPGLDGPKGNPGLPGPKGDP------GVGGPPG----LPGPVGPAGAKG 431
Query: 168 HPNMGGPMQRMTPPRGMVPLGPQNYGG--AMRPPLNALGGPGMPGMNMGPGGGRPWPNPT 225
P G GP+ G R P+ G PG PG PG P P P
Sbjct: 432 MPGHNGEA------------GPRGAPGIPGTRGPIGPPGIPGFPGSKGDPGSPGP-PGPA 478
Query: 226 -------NANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPA 259
N + P P + G PG GPPG P P A
Sbjct: 479 GIATKGLNGPTGPPGPPGPRGHSGEPGLPGPPGPPGPPGQA 519
Score = 52.0 bits (123), Expect = 8e-07
Identities = 60/205 (29%), Positives = 73/205 (35%), Gaps = 42/205 (20%)
Query: 157 PSGMDPTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPP-LNALGGPGMPGMNMGP 215
P P +GHP GP + G G Q G PP +A+G PG+PG+ P
Sbjct: 62 PGPPGPAGPRGHPGPSGPPGKP----GYGSPGLQGEPGLPGPPGPSAVGKPGVPGLPGKP 117
Query: 216 GGGRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAV 275
G P+ P P G PG GPPG P +P PA + G
Sbjct: 118 GERGPYG--------PKGDVGPA---GLPGPRGPPGPPGIPGPAGISVPGKPGQQGPTGA 166
Query: 276 P--------------PGPNRPNFPMGPGSDGPMG--GLGGMESHHMNGSLGSGDMDSISK 319
P PG N MG G+ G G GL G + G G + K
Sbjct: 167 PGPRGFPGEKGAPGVPGMNGQKGEMGYGAPGRPGERGLPGPQ-----GPTGPSGPPGVGK 221
Query: 320 NSPNNMSLSNQPGTPRD---DGEMG 341
N + QPG D GEMG
Sbjct: 222 RGEN--GVPGQPGIKGDRGFPGEMG 244
>gi|154759255 collagen, type XXVIII precursor [Homo sapiens]
Length = 1125
Score = 69.3 bits (168), Expect = 5e-12
Identities = 72/242 (29%), Positives = 88/242 (36%), Gaps = 53/242 (21%)
Query: 108 PPGDGMPVG-------PVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGM 160
PPGD P G P PPG P+ SP PG I Q + G G
Sbjct: 329 PPGDPGPKGFQGNKGEPGPPG---PYGSPGAPG-------IGQQGIKGERG--------- 369
Query: 161 DPTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRP 220
Q+G P GP+ + P P GP+ G L G G PG P G +
Sbjct: 370 ----QEGRPGAPGPIG-VGEPGQPGPRGPEGVPGE-----RGLPGEGFPG----PKGEKG 415
Query: 221 WPNPTNANSIP-YSSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGP 279
PT + S +GP G GP G P + S + G P GP
Sbjct: 416 SEGPTGPQGLQGLSIKGEKGDIGPVGPQGPMGIPGIGSQGEQGIQG----------PIGP 465
Query: 280 NRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGE 339
P P G G G G +G M G +G G K P ++ L QPG P +DG
Sbjct: 466 PGPQGPAGQGLPGSKGEVGQMGPTGPRGPVGIGVQGP--KGEPGSIGLPGQPGVPGEDGA 523
Query: 340 MG 341
G
Sbjct: 524 AG 525
Score = 56.6 bits (135), Expect = 3e-08
Identities = 70/258 (27%), Positives = 88/258 (34%), Gaps = 34/258 (13%)
Query: 111 DGMPVGPVPPGFFQPFM-SPRYPGGPRPPLRIPNQALGGVPGSQ----PLLPSGMDPTRQ 165
+G P P P G +P PR P G +P + G G + P P G+
Sbjct: 371 EGRPGAPGPIGVGEPGQPGPRGPEGVPGERGLPGEGFPGPKGEKGSEGPTGPQGLQGLSI 430
Query: 166 QGHPNMGGPMQRMTPPR--GMVPLGPQNYGGAMRPP-LNALGGPGMPGMN-----MGPGG 217
+G GP+ P G+ G Q G + PP G G+PG MGP G
Sbjct: 431 KGEKGDIGPVGPQGPMGIPGIGSQGEQGIQGPIGPPGPQGPAGQGLPGSKGEVGQMGPTG 490
Query: 218 GRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPP 277
R P G G PG G PG P +P + A P
Sbjct: 491 PRG----------PVGIGVQGPK-GEPGSIGLPGQPGVPGEDGAAGKKGE------AGLP 533
Query: 278 GPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLG----SGDMDSISKNSPNNMSLSNQPGT 333
G P P G G GP G G S G G G P M ++ PG
Sbjct: 534 GARGPEGPPGKGQPGPKGDEGKKGSKGNQGQRGLPGPEGPKGEPGIMGPFGMPGTSIPGP 593
Query: 334 PRDDGEMGGNFLNPFQSE 351
P G+ GG + F+ E
Sbjct: 594 PGPKGDRGGPGIPGFKGE 611
Score = 46.2 bits (108), Expect = 5e-05
Identities = 71/246 (28%), Positives = 84/246 (34%), Gaps = 25/246 (10%)
Query: 108 PPGDGMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGS-----QPLLPSGMDP 162
PPG P G PG + + P GPR P+ I Q G PGS QP +P
Sbjct: 465 PPGPQGPAGQGLPGS-KGEVGQMGPTGPRGPVGIGVQGPKGEPGSIGLPGQPGVPGEDGA 523
Query: 163 TRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGG--GRP 220
++G + G PP P GP+ G N G G+PG GP G G
Sbjct: 524 AGKKGEAGLPGARGPEGPPGKGQP-GPKGDEGKKGSKGNQ-GQRGLPGPE-GPKGEPGIM 580
Query: 221 WPNPTNANSIPYSSASPGNYVGP--PGGGGPPGTPI-----MPSPADSTNSGDNMYTLMN 273
P SIP G+ GP PG G PG I + P +
Sbjct: 581 GPFGMPGTSIPGPPGPKGDRGGPGIPGFKGEPGLSIRGPKGVQGPRGPVGAPGLKGDGYP 640
Query: 274 AVP-----PGPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMSLS 328
VP PGP P G G G G G +G G G K L
Sbjct: 641 GVPGPRGLPGPPGPMGLRGVGDTGAKGEPGVRGPPGPSGPRGVGTQG--PKGDTGQKGLP 698
Query: 329 NQPGTP 334
PG P
Sbjct: 699 GPPGPP 704
Score = 45.8 bits (107), Expect = 6e-05
Identities = 54/195 (27%), Positives = 65/195 (33%), Gaps = 13/195 (6%)
Query: 109 PGDGMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGH 168
PG +P P P G P + G P +R P GV G P P G + G+
Sbjct: 586 PGTSIPGPPGPKGDRGGPGIPGFKGEPGLSIRGPK----GVQG--PRGPVGAPGLKGDGY 639
Query: 169 PNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMP-GMN----MGPGGGRPWPN 223
P + GP PP M G + G P + GP P G+ G G + P
Sbjct: 640 PGVPGPRGLPGPPGPMGLRGVGDTGAKGEPGVRGPPGPSGPRGVGTQGPKGDTGQKGLPG 699
Query: 224 PTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPN 283
P Y S GP G GP GT P G+ P
Sbjct: 700 PPGPPG--YGSQGIKGEQGPQGFPGPKGTMGHGLPGQKGEHGERGDVGKKGDKGEIGEPG 757
Query: 284 FPMGPGSDGPMGGLG 298
P G GP G LG
Sbjct: 758 SPGKQGLQGPKGDLG 772
Score = 38.5 bits (88), Expect = 0.009
Identities = 41/142 (28%), Positives = 44/142 (30%), Gaps = 23/142 (16%)
Query: 204 GGPGMPGMNMGPG--GGR-PWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPAD 260
G PG PG + PG G R P NP NA PG G G G G P
Sbjct: 248 GDPGPPGTHGNPGIKGERGPKGNPGNAQKGEAGERGPGGIPGYKGDKGERGECGKPGIKG 307
Query: 261 STNSGDNMYTLMNAVPPGPNRPNFPMG-------PGSDGPMGGLGGMESHHMNGSLGSGD 313
S PGP P P G PG GP G G G GS
Sbjct: 308 DKGS------------PGPYGPKGPRGIQGITGPPGDPGPKGFQGNKGEPGPPGPYGSPG 355
Query: 314 MDSISKNS-PNNMSLSNQPGTP 334
I + +PG P
Sbjct: 356 APGIGQQGIKGERGQEGRPGAP 377
>gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo
sapiens]
Length = 678
Score = 68.9 bits (167), Expect = 7e-12
Identities = 72/235 (30%), Positives = 88/235 (37%), Gaps = 22/235 (9%)
Query: 119 PPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQ-PLLPSGMDPTRQQGHPNMGGPMQR 177
PPG P PG P PP +P + G+ G + P P G P G P G +
Sbjct: 27 PPGEQGP------PGPPGPP-GVPG--IDGIDGDRGPKGPPG--PPGPAGEPGKPGAPGK 75
Query: 178 MTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWP-NPTNANSIPYSSAS 236
P GP G++ G PG+PG PG G P P P +P
Sbjct: 76 PGTPGADGLTGPDGSPGSIGSK-GQKGEPGVPGSRGFPGRGIPGPPGPPGTAGLPGELGR 134
Query: 237 PGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGG 296
G VG PG GPPG P P P + D NA PPG R +P PG G G
Sbjct: 135 VGP-VGDPGRRGPPGPPGPPGPRGTIGFHDGDPLCPNACPPG--RSGYPGLPGMRGHKGA 191
Query: 297 LGGMESHHMNGSLG-SGDMDSI----SKNSPNNMSLSNQPGTPRDDGEMGGNFLN 346
G + G G GD + ++ P L G D GE G L+
Sbjct: 192 KGEIGEPGRQGHKGEEGDQGELGEVGAQGPPGAQGLRGITGIVGDKGEKGARGLD 246
Score = 52.8 bits (125), Expect = 5e-07
Identities = 69/267 (25%), Positives = 94/267 (35%), Gaps = 39/267 (14%)
Query: 109 PGDGMPVGPVPPGF---------FQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSG 159
PG G+P P PPG P P G P PP + G PL P+
Sbjct: 112 PGRGIPGPPGPPGTAGLPGELGRVGPVGDPGRRGPPGPPGPPGPRGTIGFHDGDPLCPNA 171
Query: 160 MDPTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGG--AMRPPLNALGGPGMPGM------ 211
P R G+P + G + G Q + G + L +G G PG
Sbjct: 172 CPPGR-SGYPGLPGMRGHKGAKGEIGEPGRQGHKGEEGDQGELGEVGAQGPPGAQGLRGI 230
Query: 212 -----NMGPGGGRPWPNPTNANSIPYSSASPGNYVGPPGGGGPP---------GTPIMPS 257
+ G G R +P + G GPPG GP G P +P
Sbjct: 231 TGIVGDKGEKGARGLDGEPGPQGLPGAPGDQGQR-GPPGEAGPKGDRGAEGARGIPGLPG 289
Query: 258 PADSTN-SGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLG-SGDMD 315
P T G + + +P P P GP D + GL G+ + G+ G +G+
Sbjct: 290 PKGDTGLPGVDGRDGIPGMPGTKGEPGKP-GPPGDAGLQGLPGVPG--IPGAKGVAGEKG 346
Query: 316 SI-SKNSPNNMSLSNQPGTPRDDGEMG 341
S + P M S +PG GE+G
Sbjct: 347 STGAPGKPGQMGNSGKPGQQGPPGEVG 373
Score = 51.6 bits (122), Expect = 1e-06
Identities = 59/209 (28%), Positives = 69/209 (33%), Gaps = 31/209 (14%)
Query: 107 IPPGDGMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQ 166
+P G P P PPG P PG P + G PG + + P QQ
Sbjct: 308 MPGTKGEPGKPGPPGDAGLQGLPGVPGIPGAKGVAGEKGSTGAPGKPGQMGNSGKPG-QQ 366
Query: 167 GHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPG---------- 216
G P GP P LGP G + L +LG PG+PG+ PG
Sbjct: 367 GPPGEVGPRGPQGLPGSRGELGPVGSPG-LPGKLGSLGSPGLPGLPGPPGLPGMKGDRGV 425
Query: 217 GGRPWPNPTNANSIPYSSASPGNYV------GPPGGGGPPGTPIMPSPADSTNSGDNMYT 270
G P P S A + GP G G PG P + P S
Sbjct: 426 VGEPGPKGEQGASGEEGEAGERGELGDIGLPGPKGSAGNPGEPGLRGPEGSRGL------ 479
Query: 271 LMNAVPPGPNRPNFPMGP-GSDGPMGGLG 298
PG P P GP G G G G
Sbjct: 480 ------PGVEGPRGPPGPRGVQGEQGATG 502
Score = 50.8 bits (120), Expect = 2e-06
Identities = 61/206 (29%), Positives = 76/206 (36%), Gaps = 32/206 (15%)
Query: 144 QALGGVPGSQPLLPSGMDPTRQQGHPNMGGPM-QRMTPPRGMVPLGPQNYGGAMRPPLNA 202
+ L G PG Q L P Q+G P GP R +P P G P ++
Sbjct: 243 RGLDGEPGPQGL-PGAPGDQGQRGPPGEAGPKGDRGAEGARGIPGLPGPKGDTGLPGVDG 301
Query: 203 LGG-PGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGN--YVGPPGGGGPPGTPIMPSPA 259
G PGMPG PG +P P PG+ G PG G PG +
Sbjct: 302 RDGIPGMPGTKGEPG--KPGP--------------PGDAGLQGLPGVPGIPGAKGVAGEK 345
Query: 260 DSTNSGDNMYTLMNAVPPGPNRPNFPMGP----GSDGPMGGLGGMESHHMNGSLGSGDMD 315
ST + + N+ PG P +GP G G G LG + S + G LG
Sbjct: 346 GSTGAPGKPGQMGNSGKPGQQGPPGEVGPRGPQGLPGSRGELGPVGSPGLPGKLG----- 400
Query: 316 SISKNSPNNMSLSNQPGTPRDDGEMG 341
S SP L PG P G+ G
Sbjct: 401 --SLGSPGLPGLPGPPGLPGMKGDRG 424
Score = 45.8 bits (107), Expect = 6e-05
Identities = 66/264 (25%), Positives = 84/264 (31%), Gaps = 62/264 (23%)
Query: 132 PGGPRPPLRIPNQALGGVPGSQ--------PLLPSGMDPTRQQGHPNMGGP--MQRMTPP 181
PG PP + + G+PGS+ P LP + G P + GP + M
Sbjct: 363 PGQQGPPGEVGPRGPQGLPGSRGELGPVGSPGLPGKLGSLGSPGLPGLPGPPGLPGMKGD 422
Query: 182 RGMV----PLGPQNYGG--------------AMRPPLNALGGPGMPGMNMGPGGGRPWPN 223
RG+V P G Q G + P + G PG PG+ GP G R P
Sbjct: 423 RGVVGEPGPKGEQGASGEEGEAGERGELGDIGLPGPKGSAGNPGEPGLR-GPEGSRGLPG 481
Query: 224 PTNANSIPYSSASPGNY--VGPPGGGGPPGTPIMPSPADSTNSGDNMYTLM--------- 272
P G G PG GPPG +P D M +
Sbjct: 482 VEGPRGPPGPRGVQGEQGATGLPGVQGPPGR----APTDQHIKQVCMRVIQEHFAEMAAS 537
Query: 273 -----NAVPPGPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLG----------SGDMDSI 317
+ P RP P PG G G G M + G G GD+
Sbjct: 538 LKRPDSGATGLPGRPGPPGPPGPPGENGFPGQMGIRGLPGIKGPPGALGLRGPKGDLGEK 597
Query: 318 SKNSPNNMSLSNQPGT---PRDDG 338
+ P + PG P D G
Sbjct: 598 GERGPPGRGPNGLPGAIGLPGDPG 621
Score = 38.1 bits (87), Expect = 0.012
Identities = 40/132 (30%), Positives = 49/132 (37%), Gaps = 13/132 (9%)
Query: 139 LRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGG--PMQRMTPPRGMV----PLGPQNY 192
L+ P+ G+PG +P P P + G P G + + P G + P G
Sbjct: 538 LKRPDSGATGLPG-RPGPPGPPGPPGENGFPGQMGIRGLPGIKGPPGALGLRGPKGDLGE 596
Query: 193 GGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPG--NYVGPPGGGGPP 250
G PP G G+PG PG P P N PG G PG GPP
Sbjct: 597 KGERGPP--GRGPNGLPGAIGLPGD--PGPASYGRNGRDGERGPPGVAGIPGVPGPPGPP 652
Query: 251 GTPIMPSPADST 262
G P PA T
Sbjct: 653 GLPGFCEPASCT 664
Score = 37.4 bits (85), Expect = 0.021
Identities = 58/200 (29%), Positives = 67/200 (33%), Gaps = 51/200 (25%)
Query: 107 IPPGDGMPVGPVPPGFFQPFMSPRYPG-----GPRPPLRIPN-QALGGVPGSQPLLPSGM 160
+P G P PG P S PG GP P + Q G+PG Q P G
Sbjct: 455 LPGPKGSAGNPGEPGLRGPEGSRGLPGVEGPRGPPGPRGVQGEQGATGLPGVQG--PPGR 512
Query: 161 DPTRQ----------QGH----------PNMG--GPMQRMTPPRGMVPLGPQNYGGAM-- 196
PT Q Q H P+ G G R PP P G + G M
Sbjct: 513 APTDQHIKQVCMRVIQEHFAEMAASLKRPDSGATGLPGRPGPPGPPGPPGENGFPGQMGI 572
Query: 197 RPPLNALGGPGMPGMNMGPGG-----GRPWPNPTNANSIPYSSASPGN------------ 239
R G PG G+ GP G G P N +P + PG+
Sbjct: 573 RGLPGIKGPPGALGLR-GPKGDLGEKGERGPPGRGPNGLPGAIGLPGDPGPASYGRNGRD 631
Query: 240 -YVGPPGGGGPPGTPIMPSP 258
GPPG G PG P P P
Sbjct: 632 GERGPPGVAGIPGVPGPPGP 651
Score = 37.0 bits (84), Expect = 0.027
Identities = 33/102 (32%), Positives = 37/102 (36%), Gaps = 19/102 (18%)
Query: 242 GPPGGGGPPGTPIMPS-PADSTNSGDNMYTLMNAVPPGPNRPNFPMG-PGSDGPMGGLGG 299
GPPG GPPG P P P GD P GP P P G PG G G G
Sbjct: 26 GPPGEQGPPGPPGPPGVPGIDGIDGDR-------GPKGPPGPPGPAGEPGKPGAPGKPGT 78
Query: 300 MESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMG 341
+ + G G SP ++ Q G P G G
Sbjct: 79 PGADGLTGPDG----------SPGSIGSKGQKGEPGVPGSRG 110
>gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 68.9 bits (167), Expect = 7e-12
Identities = 73/242 (30%), Positives = 85/242 (35%), Gaps = 34/242 (14%)
Query: 108 PPGDGMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQG 167
P G+ P GP P P G P P P G+PG P P M +G
Sbjct: 122 PRGEPGPRGPPGPPGLPGHGIPGIKGKPGPQ-GYPGVGKPGMPG-MPGKPGAMGMPGAKG 179
Query: 168 HPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGR-----PWP 222
G + M P P GP G +P GGPG+PG GP G R P P
Sbjct: 180 EIGQKGEIGPMGIPGPQGPPGPHGLPGIGKP-----GGPGLPGQP-GPKGDRGPKGLPGP 233
Query: 223 NPTNANSIPYSSASPG--NYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPN 280
PG GPPG GPPG +P +G PGP
Sbjct: 234 QGLRGPKGDKGFGMPGAPGVKGPPGMHGPPGPVGLPGVGKPGVTGF----------PGPQ 283
Query: 281 RP-NFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGE 339
P P PG GP G +G + G G + I K P + QPG P GE
Sbjct: 284 GPLGKPGAPGEPGPQGPIG------VPGVQGPPGIPGIGK--PGQDGIPGQPGFPGGKGE 335
Query: 340 MG 341
G
Sbjct: 336 QG 337
Score = 64.3 bits (155), Expect = 2e-10
Identities = 64/206 (31%), Positives = 82/206 (39%), Gaps = 27/206 (13%)
Query: 108 PPGDGMPVGPVPPGFFQPFMSPRYPG-----GPRPPLRIPN-QALGGVPGSQ-PLLPSGM 160
P G+ P+G PG P P PG GP + P + GG+ G Q P P G
Sbjct: 373 PRGEKGPIGA--PGIGGPPGEPGLPGIPGPMGPPGAIGFPGPKGEGGIVGPQGPPGPKGE 430
Query: 161 DPTRQQGHPNMGGPMQRMTPP--RGMV-PLGPQNYGGAMRPPLNALGGPGMPGMNMGPGG 217
QG P G + + PP RG+ P+GP+ G P G PG+PG+ +GP G
Sbjct: 431 PGL--QGFPGKPGFLGEVGPPGMRGLPGPIGPKGEAGQKGVP----GLPGVPGL-LGPKG 483
Query: 218 GRPWPNPTNANSIPY--SSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAV 275
P P P +GPPG GP G P +P P G ++
Sbjct: 484 EPGIPGDQGLQGPPGIPGIGGPSGPIGPPGIPGPKGEPGLPGPPGFPGIGKPGVAGLHGP 543
Query: 276 PPGP------NRPNFPMGPGSDGPMG 295
P P +P P PG GP G
Sbjct: 544 PGKPGALGPQGQPGLPGPPGPPGPPG 569
Score = 62.4 bits (150), Expect = 6e-10
Identities = 83/280 (29%), Positives = 105/280 (37%), Gaps = 74/280 (26%)
Query: 108 PPGDGMPVGPVP------------PGFFQPFMSPRYPG--GPRPPLRIPN-QALGGVPG- 151
PPG P GPV PG P P PG GP+ P+ +P Q G+PG
Sbjct: 256 PPGMHGPPGPVGLPGVGKPGVTGFPGPQGPLGKPGAPGEPGPQGPIGVPGVQGPPGIPGI 315
Query: 152 ---------SQPLLPSGMDPTRQQGHPNMGGP--MQRMTPP--------RGM--VP--LG 188
QP P G +QG P + GP + + P RGM VP LG
Sbjct: 316 GKPGQDGIPGQPGFPGGKG---EQGLPGLPGPPGLPGIGKPGFPGPKGDRGMGGVPGALG 372
Query: 189 PQNYGGAMRPPLNALGG----PGMPGM--NMGPGGGRPWPNPTNANSIPYSSASPGNYVG 242
P+ G + P +GG PG+PG+ MGP G +P P G VG
Sbjct: 373 PRGEKGPIGAP--GIGGPPGEPGLPGIPGPMGPPGAIGFPGP----------KGEGGIVG 420
Query: 243 PPGGGGPPGTP-IMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGME 301
P G GP G P + P G+ PPG P+GP + G+ G+
Sbjct: 421 PQGPPGPKGEPGLQGFPGKPGFLGE-------VGPPGMRGLPGPIGPKGEAGQKGVPGLP 473
Query: 302 SHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMG 341
+ G LG I P + L PG P G G
Sbjct: 474 G--VPGLLGPKGEPGI----PGDQGLQGPPGIPGIGGPSG 507
Score = 53.1 bits (126), Expect = 4e-07
Identities = 53/167 (31%), Positives = 66/167 (39%), Gaps = 30/167 (17%)
Query: 108 PPGD----GMPVGPVPPGFFQPFMSPRYPGGPRP--PLRIPNQ----ALGGVPG-----S 152
PPG G+ P PGF P G P P P Q L GVPG
Sbjct: 424 PPGPKGEPGLQGFPGKPGFLGEVGPPGMRGLPGPIGPKGEAGQKGVPGLPGVPGLLGPKG 483
Query: 153 QPLLPSGMDPTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPP-LNALGGPGMPGM 211
+P +P G P +GGP + PP +P GP+ G PP +G PG+ G+
Sbjct: 484 EPGIPGDQGLQGPPGIPGIGGPSGPIGPPG--IP-GPKGEPGLPGPPGFPGIGKPGVAGL 540
Query: 212 NMGPGGGRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSP 258
+ GP G P +P GPPG GPPG P + P
Sbjct: 541 H-GPPGKPGALGPQGQPGLP----------GPPGPPGPPGPPAVMPP 576
Score = 45.1 bits (105), Expect = 1e-04
Identities = 41/121 (33%), Positives = 48/121 (39%), Gaps = 9/121 (7%)
Query: 109 PGDGMPVGPV-PPGFFQPFMSPRYPGGPR-PPLRIPNQA-LGGVPGSQPLLPSGMDPTRQ 165
PG G P GP+ PPG P P PG P P + P A L G PG P + P Q
Sbjct: 500 PGIGGPSGPIGPPGIPGPKGEPGLPGPPGFPGIGKPGVAGLHGPPGK----PGALGPQGQ 555
Query: 166 QGHPNMGGPMQRMTPPRGMVPLGPQ--NYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPN 223
G P GP PP M P P Y M ++ + P G G GG +
Sbjct: 556 PGLPGPPGPPGPPGPPAVMPPTPPPQGEYLPDMGLGIDGVKPPHAYGAKKGKNGGPAYEM 615
Query: 224 P 224
P
Sbjct: 616 P 616
Score = 43.1 bits (100), Expect = 4e-04
Identities = 54/211 (25%), Positives = 64/211 (30%), Gaps = 30/211 (14%)
Query: 148 GVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTPPRGMVPLG---PQNYGGAMRPPLNALG 204
G+ P +P M P Q P +G + M + + +G P G P L
Sbjct: 32 GIKPLPPQIPPQMPPQIPQYQP-LGQQVPHMPLAKDGLAMGKEMPHLQYGKEYPHLPQYM 90
Query: 205 GPGMPGMNMGPGGGRPWPNPTNANSIPYSSA----SPGNYVGPPGGGGPPGTPIMPSPAD 260
P MG P IP +S P GP G GPPG P P
Sbjct: 91 KEIQPAPRMGKEAV-----PKKGKEIPLASLRGEQGPRGEPGPRGPPGPPGLPGHGIPGI 145
Query: 261 STNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLG---------- 310
G Y PG +P P PG G MG G G +G
Sbjct: 146 KGKPGPQGY-------PGVGKPGMPGMPGKPGAMGMPGAKGEIGQKGEIGPMGIPGPQGP 198
Query: 311 SGDMDSISKNSPNNMSLSNQPGTPRDDGEMG 341
G P L QPG D G G
Sbjct: 199 PGPHGLPGIGKPGGPGLPGQPGPKGDRGPKG 229
>gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 68.9 bits (167), Expect = 7e-12
Identities = 73/242 (30%), Positives = 85/242 (35%), Gaps = 34/242 (14%)
Query: 108 PPGDGMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQG 167
P G+ P GP P P G P P P G+PG P P M +G
Sbjct: 122 PRGEPGPRGPPGPPGLPGHGIPGIKGKPGPQ-GYPGVGKPGMPG-MPGKPGAMGMPGAKG 179
Query: 168 HPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGR-----PWP 222
G + M P P GP G +P GGPG+PG GP G R P P
Sbjct: 180 EIGQKGEIGPMGIPGPQGPPGPHGLPGIGKP-----GGPGLPGQP-GPKGDRGPKGLPGP 233
Query: 223 NPTNANSIPYSSASPG--NYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPN 280
PG GPPG GPPG +P +G PGP
Sbjct: 234 QGLRGPKGDKGFGMPGAPGVKGPPGMHGPPGPVGLPGVGKPGVTGF----------PGPQ 283
Query: 281 RP-NFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGE 339
P P PG GP G +G + G G + I K P + QPG P GE
Sbjct: 284 GPLGKPGAPGEPGPQGPIG------VPGVQGPPGIPGIGK--PGQDGIPGQPGFPGGKGE 335
Query: 340 MG 341
G
Sbjct: 336 QG 337
Score = 64.3 bits (155), Expect = 2e-10
Identities = 64/206 (31%), Positives = 82/206 (39%), Gaps = 27/206 (13%)
Query: 108 PPGDGMPVGPVPPGFFQPFMSPRYPG-----GPRPPLRIPN-QALGGVPGSQ-PLLPSGM 160
P G+ P+G PG P P PG GP + P + GG+ G Q P P G
Sbjct: 373 PRGEKGPIGA--PGIGGPPGEPGLPGIPGPMGPPGAIGFPGPKGEGGIVGPQGPPGPKGE 430
Query: 161 DPTRQQGHPNMGGPMQRMTPP--RGMV-PLGPQNYGGAMRPPLNALGGPGMPGMNMGPGG 217
QG P G + + PP RG+ P+GP+ G P G PG+PG+ +GP G
Sbjct: 431 PGL--QGFPGKPGFLGEVGPPGMRGLPGPIGPKGEAGQKGVP----GLPGVPGL-LGPKG 483
Query: 218 GRPWPNPTNANSIPY--SSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAV 275
P P P +GPPG GP G P +P P G ++
Sbjct: 484 EPGIPGDQGLQGPPGIPGIGGPSGPIGPPGIPGPKGEPGLPGPPGFPGIGKPGVAGLHGP 543
Query: 276 PPGP------NRPNFPMGPGSDGPMG 295
P P +P P PG GP G
Sbjct: 544 PGKPGALGPQGQPGLPGPPGPPGPPG 569
Score = 62.4 bits (150), Expect = 6e-10
Identities = 83/280 (29%), Positives = 105/280 (37%), Gaps = 74/280 (26%)
Query: 108 PPGDGMPVGPVP------------PGFFQPFMSPRYPG--GPRPPLRIPN-QALGGVPG- 151
PPG P GPV PG P P PG GP+ P+ +P Q G+PG
Sbjct: 256 PPGMHGPPGPVGLPGVGKPGVTGFPGPQGPLGKPGAPGEPGPQGPIGVPGVQGPPGIPGI 315
Query: 152 ---------SQPLLPSGMDPTRQQGHPNMGGP--MQRMTPP--------RGM--VP--LG 188
QP P G +QG P + GP + + P RGM VP LG
Sbjct: 316 GKPGQDGIPGQPGFPGGKG---EQGLPGLPGPPGLPGIGKPGFPGPKGDRGMGGVPGALG 372
Query: 189 PQNYGGAMRPPLNALGG----PGMPGM--NMGPGGGRPWPNPTNANSIPYSSASPGNYVG 242
P+ G + P +GG PG+PG+ MGP G +P P G VG
Sbjct: 373 PRGEKGPIGAP--GIGGPPGEPGLPGIPGPMGPPGAIGFPGP----------KGEGGIVG 420
Query: 243 PPGGGGPPGTP-IMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGME 301
P G GP G P + P G+ PPG P+GP + G+ G+
Sbjct: 421 PQGPPGPKGEPGLQGFPGKPGFLGE-------VGPPGMRGLPGPIGPKGEAGQKGVPGLP 473
Query: 302 SHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMG 341
+ G LG I P + L PG P G G
Sbjct: 474 G--VPGLLGPKGEPGI----PGDQGLQGPPGIPGIGGPSG 507
Score = 53.1 bits (126), Expect = 4e-07
Identities = 53/167 (31%), Positives = 66/167 (39%), Gaps = 30/167 (17%)
Query: 108 PPGD----GMPVGPVPPGFFQPFMSPRYPGGPRP--PLRIPNQ----ALGGVPG-----S 152
PPG G+ P PGF P G P P P Q L GVPG
Sbjct: 424 PPGPKGEPGLQGFPGKPGFLGEVGPPGMRGLPGPIGPKGEAGQKGVPGLPGVPGLLGPKG 483
Query: 153 QPLLPSGMDPTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPP-LNALGGPGMPGM 211
+P +P G P +GGP + PP +P GP+ G PP +G PG+ G+
Sbjct: 484 EPGIPGDQGLQGPPGIPGIGGPSGPIGPPG--IP-GPKGEPGLPGPPGFPGIGKPGVAGL 540
Query: 212 NMGPGGGRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSP 258
+ GP G P +P GPPG GPPG P + P
Sbjct: 541 H-GPPGKPGALGPQGQPGLP----------GPPGPPGPPGPPAVMPP 576
Score = 45.1 bits (105), Expect = 1e-04
Identities = 41/121 (33%), Positives = 48/121 (39%), Gaps = 9/121 (7%)
Query: 109 PGDGMPVGPV-PPGFFQPFMSPRYPGGPR-PPLRIPNQA-LGGVPGSQPLLPSGMDPTRQ 165
PG G P GP+ PPG P P PG P P + P A L G PG P + P Q
Sbjct: 500 PGIGGPSGPIGPPGIPGPKGEPGLPGPPGFPGIGKPGVAGLHGPPGK----PGALGPQGQ 555
Query: 166 QGHPNMGGPMQRMTPPRGMVPLGPQ--NYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPN 223
G P GP PP M P P Y M ++ + P G G GG +
Sbjct: 556 PGLPGPPGPPGPPGPPAVMPPTPPPQGEYLPDMGLGIDGVKPPHAYGAKKGKNGGPAYEM 615
Query: 224 P 224
P
Sbjct: 616 P 616
Score = 43.1 bits (100), Expect = 4e-04
Identities = 54/211 (25%), Positives = 64/211 (30%), Gaps = 30/211 (14%)
Query: 148 GVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTPPRGMVPLG---PQNYGGAMRPPLNALG 204
G+ P +P M P Q P +G + M + + +G P G P L
Sbjct: 32 GIKPLPPQIPPQMPPQIPQYQP-LGQQVPHMPLAKDGLAMGKEMPHLQYGKEYPHLPQYM 90
Query: 205 GPGMPGMNMGPGGGRPWPNPTNANSIPYSSA----SPGNYVGPPGGGGPPGTPIMPSPAD 260
P MG P IP +S P GP G GPPG P P
Sbjct: 91 KEIQPAPRMGKEAV-----PKKGKEIPLASLRGEQGPRGEPGPRGPPGPPGLPGHGIPGI 145
Query: 261 STNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLG---------- 310
G Y PG +P P PG G MG G G +G
Sbjct: 146 KGKPGPQGY-------PGVGKPGMPGMPGKPGAMGMPGAKGEIGQKGEIGPMGIPGPQGP 198
Query: 311 SGDMDSISKNSPNNMSLSNQPGTPRDDGEMG 341
G P L QPG D G G
Sbjct: 199 PGPHGLPGIGKPGGPGLPGQPGPKGDRGPKG 229
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 68.6 bits (166), Expect = 9e-12
Identities = 73/245 (29%), Positives = 87/245 (35%), Gaps = 20/245 (8%)
Query: 112 GMPVGPVPPGFFQPFMSPRYPG--------GPRPPLRIPNQ-ALGGVPGSQPLLPSGMDP 162
G P P PPGF SP PG G R P +P G PG Q P+G+D
Sbjct: 1159 GFPGPPGPPGFPGKVGSPGPPGPQAEKGSEGIRGPSGLPGSPGPPGPPGIQG--PAGLDG 1216
Query: 163 TR-QQGHPNMGGPMQRMTPPRGMVPLGPQNYGG--AMRPPLNALGGPGMPGMNMGPGG-G 218
+ G P + G PP M P G + G + P G PG PG PG G
Sbjct: 1217 LDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSTGRPGAEG 1276
Query: 219 RPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPG 278
P P P GPPG GP G + D +G+ + P
Sbjct: 1277 EPGAMGPQGRPGPPGHVGPP---GPPGQPGPAGISAVGLKGDRGATGERGLAGLPGQPGP 1333
Query: 279 PNRPNFPMGPGSDGPMGGLGGMESHHMNGSLG-SGDMDSI-SKNSPNNMSLSNQPGTPRD 336
P P P PG+DG G G G G GD + K + PG P
Sbjct: 1334 PGHPGPPGEPGTDGAAGKEGPPGKQGFYGPPGPKGDPGAAGQKGQAGEKGRAGMPGGPGK 1393
Query: 337 DGEMG 341
G MG
Sbjct: 1394 SGSMG 1398
Score = 56.2 bits (134), Expect = 4e-08
Identities = 69/248 (27%), Positives = 82/248 (33%), Gaps = 44/248 (17%)
Query: 112 GMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNM 171
G+P P PG P G P PP I G GS P LP G+ R G +
Sbjct: 1021 GLPGPPGLPGQRGEEGPPGMRGSPGPPGPIGPPGFPGAVGS-PGLP-GLQGER--GLTGL 1076
Query: 172 GGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMN--MGPGGGRPWPNPTNANS 229
G PP G Y GA PP G PG+ G G G + P P +
Sbjct: 1077 TGDKGEPGPP------GQPGYPGATGPP----GLPGIKGERGYTGSAGEKGEPGPPGSEG 1126
Query: 230 IPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPG 289
+P GPPG GP G +S GD + P P P FP G
Sbjct: 1127 LP----------GPPGPAGPRGE--RGPQGNSGEKGDQGFQGQPGFPGPPGPPGFPGKVG 1174
Query: 290 SDGPMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMGGNFLNPFQ 349
S GP G S + G G L PG P G G L+
Sbjct: 1175 SPGPPGPQAEKGSEGIRGPSG----------------LPGSPGPPGPPGIQGPAGLDGLD 1218
Query: 350 SESYSPSM 357
+ P +
Sbjct: 1219 GKDGKPGL 1226
Score = 51.2 bits (121), Expect = 1e-06
Identities = 72/254 (28%), Positives = 86/254 (33%), Gaps = 65/254 (25%)
Query: 100 PSPVLGNIPPGDGMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSG 159
P P P G G P P PG PG PP Q G PG P G
Sbjct: 744 PGPKGEQGPEGVGRPGKPGQPGL---------PGVQGPPGLKGVQGEPGPPGRGVQGPQG 794
Query: 160 MDPTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGR 219
+ G P + G +Q + PRG P GP GA G PG+ G GP G
Sbjct: 795 -----EPGAPGLPG-IQGLPGPRG--PPGPTGEKGAQ-------GSPGVKGAT-GPVG-- 836
Query: 220 PWPNPTNANSIPYSSASPGN--YVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVP- 276
P + + P G G PG GP G P + GD +++ M P
Sbjct: 837 --PPGASVSGPPGRDGQQGQTGLRGTPGEKGPRGEKGEPGECSCPSQGDLIFSGMPGAPG 894
Query: 277 --------PGPNRPNFPMGPGSDGPMG--GLGGMESHHMNGSLGSGDMDSISKNSPNNMS 326
PGP P P PG GP G GL G+ P N
Sbjct: 895 LWMGSSWQPGPQGP--PGIPGPPGPPGVPGLQGV---------------------PGNNG 931
Query: 327 LSNQPGTPRDDGEM 340
L QPG + G +
Sbjct: 932 LPGQPGLTAELGSL 945
Score = 48.9 bits (115), Expect = 7e-06
Identities = 74/285 (25%), Positives = 93/285 (32%), Gaps = 58/285 (20%)
Query: 97 AAAPSPVLGNIPPGDGMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPN-QALGGVPGSQ-- 153
A P P PPG G+P P PG P P G + IP + GG PG
Sbjct: 446 AGEPGPPGLPGPPGIGLPGTPGDPG------GPPGPKGDKGSSGIPGKEGPGGKPGKPGV 499
Query: 154 -----------PLLPSGM-----------------DPTRQQGHPNMGGPMQRMTPPRGMV 185
P LP G DP +G P + G + +G
Sbjct: 500 KGEKGDPCEVCPTLPEGFQNFVGLPGKPGPKGEPGDPVPARGDPGIQG----IKGEKGEP 555
Query: 186 PLGPQNYGGAMR--PPLNALGGPGMPGMNMG--PG-GGRPWPNPTNAN---SIPYSSASP 237
L + GA A G G PG + PG G P N + P S P
Sbjct: 556 CLSCSSVVGAQHLVSSTGASGDVGSPGFGLPGLPGRAGVPGLKGEKGNFGEAGPAGSPGP 615
Query: 238 GNYVGPPGGGGPPGTPIMPSPA-DSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGG 296
VGP G G G P P PA + GD + PGP+ GP G G
Sbjct: 616 PGPVGPAGIKGAKGEPCEPCPALSNLQDGDVRVVAL----PGPSGEKGEPGPPGFGLPGK 671
Query: 297 LGGMESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMG 341
G + G G D+ + P + +PG + G G
Sbjct: 672 QGKAGERGLKGQKG----DAGNPGDPGTPGTTGRPGLSGEPGVQG 712
Score = 46.2 bits (108), Expect = 5e-05
Identities = 71/270 (26%), Positives = 90/270 (33%), Gaps = 60/270 (22%)
Query: 109 PGDGMPVG-PVPPGFFQPFMSPRYPGGPRPPL-----------RIPNQALGGVPGSQPLL 156
PG P G P PPG P P PG P P + L G+PG QP
Sbjct: 1278 PGAMGPQGRPGPPGHVGP---PGPPGQPGPAGISAVGLKGDRGATGERGLAGLPG-QPGP 1333
Query: 157 PSGMDPTRQQGHPNMGGPMQRMTPP--RGMV-PLGPQNYGGAMRPPLNALGGPGMPGMNM 213
P P G P G + PP +G P GP+ GA A G G GM
Sbjct: 1334 PGHPGPP---GEPGTDGAAGKEGPPGKQGFYGPPGPKGDPGAAGQKGQA-GEKGRAGMPG 1389
Query: 214 GPGGGRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMN 273
GPG + + P P G PG GP G+P +P S N +
Sbjct: 1390 GPG--------KSGSMGPVGPPGPAGERGHPGAPGPSGSPGLPGVPGSMGDMVNYDEIKR 1441
Query: 274 AVPPG------------PNRPNFPMG----------PGSDGPMGGLGGMESHHMNGSLGS 311
+ +R FPM PG DG G G S + G +G
Sbjct: 1442 FIRQEIIKMFDERMAYYTSRMQFPMEMAAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGR 1501
Query: 312 GDMDSISKNSPNNMSLSNQPGTPRDDGEMG 341
+ + PGT + G++G
Sbjct: 1502 EGRQGLP-------GVRGLPGTKGEKGDIG 1524
Score = 41.2 bits (95), Expect = 0.001
Identities = 59/242 (24%), Positives = 80/242 (33%), Gaps = 37/242 (15%)
Query: 135 PRPPLRIPNQALGGVPGSQPLLPSGMDPTR----QQGHPNMGG------PMQRMTPPRGM 184
P PL+ G S L PSG+ + Q+G GG R P +
Sbjct: 366 PDAPLQCAEGPKGEKGESGALGPSGLPGSTGEKGQKGEKGDGGIKGVPGKPGRDGRPGEI 425
Query: 185 VPLGPQNYGG--AMRPPLNALGGPGMPGMNMGPG----------GGRPWPNPTNANSIPY 232
+GP+ G P G PG PG+ PG GG P P +S
Sbjct: 426 CVIGPKGQKGDPGFVGPEGLAGEPGPPGLPGPPGIGLPGTPGDPGGPPGPKGDKGSSGIP 485
Query: 233 SSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDG 292
PG G PG G G P P + G + + P P P+ D
Sbjct: 486 GKEGPGGKPGKPGVKGEKGDPCEVCP--TLPEGFQNFVGLPGKPGPKGEPGDPVPARGDP 543
Query: 293 PMGGLGG------------MESHHMNGSLG-SGDMDSISKNSPNNMSLSNQPGTPRDDGE 339
+ G+ G + + H+ S G SGD+ S P + PG + G
Sbjct: 544 GIQGIKGEKGEPCLSCSSVVGAQHLVSSTGASGDVGSPGFGLPGLPGRAGVPGLKGEKGN 603
Query: 340 MG 341
G
Sbjct: 604 FG 605
Score = 41.2 bits (95), Expect = 0.001
Identities = 65/245 (26%), Positives = 74/245 (30%), Gaps = 70/245 (28%)
Query: 112 GMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQ----PLLPSGMDPTRQQG 167
G+P P PPG +PG P P G PG Q P P G DP G
Sbjct: 1326 GLPGQPGPPG---------HPGPPGEPGTDGAAGKEGPPGKQGFYGPPGPKG-DPGAA-G 1374
Query: 168 HPNMGGPMQRMTPPRG------MVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPW 221
G R P G M P+GP G P A G G PG+ PG
Sbjct: 1375 QKGQAGEKGRAGMPGGPGKSGSMGPVGPPGPAGERGHP-GAPGPSGSPGLPGVPGSMGDM 1433
Query: 222 PNP----------------------TNANSIPYSSASPGNYVGPPGGGGPPGTPIMPS-- 257
N T+ P A+ GPPG G PG P P
Sbjct: 1434 VNYDEIKRFIRQEIIKMFDERMAYYTSRMQFPMEMAAAPGRPGPPGKDGAPGRPGAPGSP 1493
Query: 258 --PADSTNSGDNMYTLMNAVP-------------------PGPNRPNFPMG---PGSDGP 293
P G + +P PGP P P G G+ GP
Sbjct: 1494 GLPGQIGREGRQGLPGVRGLPGTKGEKGDIGIGIAGENGLPGPPGPQGPPGYGKMGATGP 1553
Query: 294 MGGLG 298
MG G
Sbjct: 1554 MGQQG 1558
Score = 39.3 bits (90), Expect = 0.006
Identities = 66/257 (25%), Positives = 81/257 (31%), Gaps = 34/257 (13%)
Query: 110 GDGMPVGPVPPGFFQPFMS------PR-YPGGPRPPLRIPN-QALGGVPGSQPL------ 155
GD V P P FQ F+ P+ PG P P P Q + G G L
Sbjct: 504 GDPCEVCPTLPEGFQNFVGLPGKPGPKGEPGDPVPARGDPGIQGIKGEKGEPCLSCSSVV 563
Query: 156 ----LPSGMDPTRQQGHPNMGGPMQRMTPPRGMVP--LGPQNYGGAMRPPLNALGGPGMP 209
L S + G P G P P R VP G + G P G PG P
Sbjct: 564 GAQHLVSSTGASGDVGSPGFGLPG---LPGRAGVPGLKGEKGNFGEAGPA----GSPGPP 616
Query: 210 GMNMGPGG-----GRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTNS 264
G +GP G G P +++ GP G G PG P P +
Sbjct: 617 GP-VGPAGIKGAKGEPCEPCPALSNLQDGDVRVVALPGPSGEKGEPGPPGFGLPGKQGKA 675
Query: 265 GDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMDSISKNSPNN 324
G+ P P P G G G G G G G +
Sbjct: 676 GERGLKGQKGDAGNPGDPGTPGTTGRPGLSGEPGVQGPAGPKGEKGDG-CTACPSLQGTV 734
Query: 325 MSLSNQPGTPRDDGEMG 341
++ +PG P GE G
Sbjct: 735 TDMAGRPGQPGPKGEQG 751
Score = 39.3 bits (90), Expect = 0.006
Identities = 43/164 (26%), Positives = 55/164 (33%), Gaps = 31/164 (18%)
Query: 132 PGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTPPRGMVPLGPQN 191
PG P PP + G PGS P LP + +QG P + G + +G + +G
Sbjct: 1472 PGRPGPPGKDGAPGRPGAPGS-PGLPGQIGREGRQGLPGVRG-LPGTKGEKGDIGIGIAG 1529
Query: 192 YGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPG 251
G PG PG PG G+ + P G PG GPPG
Sbjct: 1530 ENGL----------PGPPGPQGPPGYGK------------MGATGPMGQQGIPGIPGPPG 1567
Query: 252 TPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMG 295
P A N D + P +P GP G
Sbjct: 1568 PMGQPGKAGHCNPSDCFGAM-------PMEQQYPPMKTMKGPFG 1604
Score = 36.6 bits (83), Expect = 0.036
Identities = 62/243 (25%), Positives = 85/243 (34%), Gaps = 23/243 (9%)
Query: 103 VLGNIPPGDGMPVGPV-PPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMD 161
+ +P G+ +G PG P P PG P PP +P L GVPG+ L P
Sbjct: 885 IFSGMPGAPGLWMGSSWQPG---PQGPPGIPGPPGPP-GVPG--LQGVPGNNGL-PGQPG 937
Query: 162 PTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAM--RPPLNALGGPGMPGMNMGPGGGR 219
T + G ++ + G G + + G + + G PG+PG++
Sbjct: 938 LTAELG--SLPIEQHLLKSICGDCVQGQRAHPGYLVEKGEKGDQGIPGVPGLDNCAQCFL 995
Query: 220 PWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGP 279
P + +S VG PG GPPG P + PPGP
Sbjct: 996 SLERPRAEEARGDNSEGDPGCVGSPGLPGPPGLPGQRGEEGPPGMRG------SPGPPGP 1049
Query: 280 -NRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDG 338
P FP GS G G G + G G + P + PG P G
Sbjct: 1050 IGPPGFPGAVGSPGLPGLQGERGLTGLTGDKG----EPGPPGQPGYPGATGPPGLPGIKG 1105
Query: 339 EMG 341
E G
Sbjct: 1106 ERG 1108
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 68.2 bits (165), Expect = 1e-11
Identities = 76/271 (28%), Positives = 88/271 (32%), Gaps = 57/271 (21%)
Query: 108 PPGDGMPVGPVPPGFFQPFMSPRYPGGPR-PPLRIPNQALGGVPGSQPLLPSGMDPTRQQ 166
PP G P G P G Q P PG P PP + NQ+ G P P + +
Sbjct: 51 PPPPGKPEGRPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPP----------RPGKPE 100
Query: 167 GHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGP---GG------ 217
G P GG + PPR P GP GG + G P PG GP GG
Sbjct: 101 GQPPQGGNQSQGPPPRPGKPEGPPPQGGN-----QSQGPPPRPGKPEGPPPQGGNQSQGP 155
Query: 218 ----GRP-WPNPTNANSIPYSSASPGNYVGPPGGGG--------PPGTPIMPSPADSTNS 264
G+P P P N PG GPP GG PG P P P S
Sbjct: 156 PPRPGKPEGPPPQGGNQSQGPPPHPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQS 215
Query: 265 GDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMDSISKNSPNN 324
PP P +P P G + P G H G + P
Sbjct: 216 --------QGPPPRPGKPEGPPSQGGNKPQG-----PPPHPGKPQGPPPQEGNKPQRP-- 260
Query: 325 MSLSNQPGTPRDDGEMGGNFLNPFQSESYSP 355
PG P+ GGN P + P
Sbjct: 261 ----PPPGRPQGPPPPGGNPQQPLPPPAGKP 287
Score = 67.4 bits (163), Expect = 2e-11
Identities = 61/191 (31%), Positives = 71/191 (37%), Gaps = 37/191 (19%)
Query: 100 PSPVLGNI----PPGDGMPVGPVPPGFFQPFMSPRYPGGPR-PPLRIPNQALGGVPGSQP 154
P P GN PP G P GP P G Q P +PG P PP + NQ+ G P
Sbjct: 144 PPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPHPGKPEGPPPQGGNQSQGPPPR--- 200
Query: 155 LLPSGMDPTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMG 214
P + +G P GG + PPR P GP + GG G P PG G
Sbjct: 201 -------PGKPEGPPPQGGNQSQGPPPRPGKPEGPPSQGGN-----KPQGPPPHPGKPQG 248
Query: 215 PGGGRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNA 274
P P + P PG GPP GG P P +P PA
Sbjct: 249 P--------PPQEGNKPQRPPPPGRPQGPPPPGGNPQQP-LPPPAGKPQG--------PP 291
Query: 275 VPPGPNRPNFP 285
PP RP+ P
Sbjct: 292 PPPQGGRPHRP 302
Score = 45.1 bits (105), Expect = 1e-04
Identities = 40/107 (37%), Positives = 46/107 (42%), Gaps = 17/107 (15%)
Query: 100 PSPVLGNI----PPGDGMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPL 155
P P GN PP G P GP G +P P +PG P+ P P Q G++P
Sbjct: 207 PPPQGGNQSQGPPPRPGKPEGPPSQGGNKPQGPPPHPGKPQGP---PPQE-----GNKPQ 258
Query: 156 LPSGMDPTRQQGHPNMGG-PMQRMTPPRG--MVPLGPQNYGGAMRPP 199
P P R QG P GG P Q + PP G P P G RPP
Sbjct: 259 RPP--PPGRPQGPPPPGGNPQQPLPPPAGKPQGPPPPPQGGRPHRPP 303
>gi|160707881 formin 2 [Homo sapiens]
Length = 1722
Score = 67.8 bits (164), Expect = 1e-11
Identities = 66/210 (31%), Positives = 81/210 (38%), Gaps = 28/210 (13%)
Query: 96 AAAAPSPVLGNIPPGDGMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPL 155
AA P P L PG G+P+ P PG P P G PP +P G+P PL
Sbjct: 951 AAIPPPPPL----PGAGIPLPPPLPGAGIPPPPPLPGAGIPPPPPLPG---AGIPPPPPL 1003
Query: 156 LPSGMDPTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGP 215
+G+ P P G P P G+ P P GA PP L G G+P P
Sbjct: 1004 PGAGIPPPPPL--PGAGIPPPPPLPGAGIPP--PPPLPGAGIPPPPPLPGAGIPPPPPLP 1059
Query: 216 GGGRPWPNPTNANSIPYSSASPGNYVGP----PGGGGPPGTPI----MPSPADSTNSGDN 267
G G P P P IP PG + P PG G PP P+ +P P +G
Sbjct: 1060 GAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGVGIPPPPPLPGAG-- 1117
Query: 268 MYTLMNAVPPGPNRPNFPMGPGSDGPMGGL 297
+PP P P + P P G+
Sbjct: 1118 -------IPPPPPLPGAGIPPPPPLPGAGI 1140
Score = 61.2 bits (147), Expect = 1e-09
Identities = 69/257 (26%), Positives = 92/257 (35%), Gaps = 46/257 (17%)
Query: 67 VFWDLYCAAPERRETCEHSSEAKAFHDYSAAAA-------PSPV-LGNIPPGDGMP-VGP 117
+ W P + S+E + H++S ++A PSP L MP +G
Sbjct: 816 LLWSAGQGQPGSQPPHSISTEFQTSHEHSVSSAFKNSCNIPSPPPLPCTESSSSMPGLGM 875
Query: 118 VPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQR 177
VPP P P P + +P +P PL + M P P G P
Sbjct: 876 VPP-----------PPPPLPGMTVPTLPSTAIPQPPPLQGTEMLPPPPPPLPGAGIPPPP 924
Query: 178 MTPPRGMVPLGP---------QNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNAN 228
P G++PL P GA PP L G G+P PG G P P P
Sbjct: 925 PLPGAGILPLPPLPGAGIPPPPPLPGAAIPPPPPLPGAGIPLPPPLPGAGIPPPPPLPGA 984
Query: 229 SIPYSSASPGNYVGP----PGGGGPPGTPI----MPSPADSTNSGDNMYTLMNAVPPGPN 280
IP PG + P PG G PP P+ +P P +G +PP P
Sbjct: 985 GIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAG---------IPPPPP 1035
Query: 281 RPNFPMGPGSDGPMGGL 297
P + P P G+
Sbjct: 1036 LPGAGIPPPPPLPGAGI 1052
Score = 59.3 bits (142), Expect = 5e-09
Identities = 64/199 (32%), Positives = 75/199 (37%), Gaps = 25/199 (12%)
Query: 96 AAAAPSPVLGNIPPGDGMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPL 155
A P P L PG G+P P PG P P G PP +P G+P PL
Sbjct: 1072 AGIPPPPPL----PGAGIPPPPPLPGAGIPPPPPLPGVGIPPPPPLPG---AGIPPPPPL 1124
Query: 156 LPSGMDPTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGP 215
+G+ P P G P P G+ P P GA PP L G G+P P
Sbjct: 1125 PGAGIPPPPPL--PGAGIPPPPPLPRVGIPP--PPPLPGAGIPPPPPLPGAGIPPPPPLP 1180
Query: 216 GGGRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAV 275
G G P P P IP PG + PP PG I P+PA
Sbjct: 1181 GVGIPPPPPLPGVGIPPPPPLPGAGIPPP--PPLPGMGIPPAPAPP------------LP 1226
Query: 276 PPGPNRPNFPMGPGSDGPM 294
PPG P P+ P S P+
Sbjct: 1227 PPGTGIPPPPLLPVSGPPL 1245
Score = 57.0 bits (136), Expect = 3e-08
Identities = 59/197 (29%), Positives = 74/197 (37%), Gaps = 24/197 (12%)
Query: 109 PGDGMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGH 168
PG G+P P PG + P G PP +P A +P PL +G+
Sbjct: 916 PGAGIPPPPPLPGAGILPLPPLPGAGIPPPPPLPGAA---IPPPPPLPGAGIPLPPPL-- 970
Query: 169 PNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNAN 228
P G P P G+ P P GA PP L G G+P PG G P P P
Sbjct: 971 PGAGIPPPPPLPGAGIPP--PPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGA 1028
Query: 229 SIPYSSASPGNYVGP----PGGGGPPGTPI----MPSPADSTNSGDNMYTLMNAVPPGPN 280
IP PG + P PG G PP P+ +P P +G +PP P
Sbjct: 1029 GIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAG---------IPPPPP 1079
Query: 281 RPNFPMGPGSDGPMGGL 297
P + P P G+
Sbjct: 1080 LPGAGIPPPPPLPGAGI 1096
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 67.0 bits (162), Expect = 2e-11
Identities = 78/268 (29%), Positives = 96/268 (35%), Gaps = 45/268 (16%)
Query: 99 APSPVLGNIPPGDGMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLL-- 156
AP P PG G+P P PPG P G + L +P G+PG+ ++
Sbjct: 2361 APGPKGFKGDPGVGVPGSPGPPG----------PPGVKGDLGLP-----GLPGAPGVVGF 2405
Query: 157 PSGMDPTRQQGHPNMGGPMQRMTPP--RGMV-PLGPQNYGGAMRPPLNALGGPGMPGMNM 213
P P + G P G PP G+ PLGP G++ PP G G+ G
Sbjct: 2406 PGQTGPRGEMGQPGPSGERGLAGPPGREGIPGPLGPPGPPGSVGPP----GASGLKGDKG 2461
Query: 214 GPGGGRPWPNPTNAN-SIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTNS----GDNM 268
PG G P P I PG GP G GPPG+ S GD
Sbjct: 2462 DPGVGLPGPRGERGEPGIRGEDGRPGQ-EGPRGLTGPPGSRGERGEKGDVGSAGLKGDKG 2520
Query: 269 YTLMNAVPPGPNRPNFPMGP----GSDGPMGGLGGMESHHMNGSLGS-GDMDSIS----- 318
+ + PPGP MG G DG G G GS G GD S
Sbjct: 2521 DSAVILGPPGPRGAKGDMGERGPRGLDGDKGPRGDNGDPGDKGSKGEPGDKGSAGLPGLR 2580
Query: 319 -----KNSPNNMSLSNQPGTPRDDGEMG 341
+ P + PG+P DG G
Sbjct: 2581 GLLGPQGQPGAAGIPGDPGSPGKDGVPG 2608
Score = 54.3 bits (129), Expect = 2e-07
Identities = 70/271 (25%), Positives = 82/271 (30%), Gaps = 58/271 (21%)
Query: 108 PPGD-------GMPVGPVPPGFFQPFMSPRYPGG---PRPPLRIPNQALGGVPGSQPLLP 157
PPGD G P PPG +PG P P R N G PG +
Sbjct: 1270 PPGDPGLPGRTGAPGPQGPPGSATAKGERGFPGADGRPGSPGRAGNPGTPGAPGLK---- 1325
Query: 158 SGMDPTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGG--PGMPGMNMGP 215
G P + GP P P GP+ GA P +GG PG+PG P
Sbjct: 1326 ---------GSPGLPGPRG---DPGERGPRGPKGEPGA---PGQVIGGEGPGLPGRKGDP 1370
Query: 216 GGGRPWPNPTNANSIPYSSASPG-------------NYVGPPGGG------------GPP 250
G P P P P PG GPPG G G P
Sbjct: 1371 GPSGP-PGPRGPLGDPGPRGPPGLPGTAMKGDKGDRGERGPPGPGEGGIAPGEPGLPGLP 1429
Query: 251 GTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLG 310
G+P P + P P +P P G GP G +G G LG
Sbjct: 1430 GSPGPQGPVGPPGKKGEKGDSEDGAPGLPGQPGSPGEQGPRGPPGAIGPKGDRGFPGPLG 1489
Query: 311 SGDMDSISKNSPNNMSLSNQPGTPRDDGEMG 341
+ + P PG G G
Sbjct: 1490 EAG-EKGERGPPGPAGSRGLPGVAGRPGAKG 1519
Score = 53.1 bits (126), Expect = 4e-07
Identities = 70/252 (27%), Positives = 87/252 (34%), Gaps = 50/252 (19%)
Query: 108 PPGDGMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPG--------SQPLLPSG 159
PPG +P P PPG P GP+ + P L G G +P
Sbjct: 2077 PPG--LPGTPGPPG----------PPGPKVSVDEPGPGLSGEQGPPGLKGAKGEPGSNGD 2124
Query: 160 MDPTRQQGHPNMGGPMQRMTP-PRGMVPLGPQNYGGAMRPPLNALGGP-GMPGMN----- 212
P +G P + G R P PRG G P + GP G PG+
Sbjct: 2125 QGPKGDRGVPGIKG--DRGEPGPRGQD-------GNPGLPGERGMAGPEGKPGLQGPRGP 2175
Query: 213 MGPGGGRPWPNPTNANSI--PYSSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYT 270
GP GG P P A + P P G PG GPPG + G
Sbjct: 2176 PGPVGGHGDPGPPGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLTGPTGAVGLPG----- 2230
Query: 271 LMNAVPPGPNRPNFPMG-PGSDGPMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMSLSN 329
PPGP+ P G PG G +G G + +G+ G D D S P + L
Sbjct: 2231 -----PPGPSGLVGPQGSPGLPGQVGETGKPGAPGRDGASGK-DGDRGSPGVPGSPGLPG 2284
Query: 330 QPGTPRDDGEMG 341
G + G G
Sbjct: 2285 PVGPKGEPGPTG 2296
Score = 52.4 bits (124), Expect = 6e-07
Identities = 81/274 (29%), Positives = 103/274 (37%), Gaps = 56/274 (20%)
Query: 109 PGDGMPVGPVPPGFFQPFMSPRYPG--------GPR-PPLRIPNQALGGV---PGSQ-PL 155
PG+ P GP PG P +PG G R PP ++ L GV PG++ P
Sbjct: 1464 PGEQGPRGP--PGAIGPKGDRGFPGPLGEAGEKGERGPPGPAGSRGLPGVAGRPGAKGPE 1521
Query: 156 LPSGMDPTRQQGH---------PNMGGPMQRMTPPRG----MVPLGPQNYGGAMRPPLNA 202
P G PT +QG P + GP + P+G + P GP+ G
Sbjct: 1522 GPPG--PTGRQGEKGEPGRPGDPAVVGPA--VAGPKGEKGDVGPAGPRGATGVQ------ 1571
Query: 203 LGGPGMPGMNMGPGGGRPWPNPTNANSIPYSS-ASPGNYVGPPGGGGPPGTPIMPSPADS 261
G G PG+ + PG P +P + I + A P GPPG G PG P P P
Sbjct: 1572 -GERGPPGLVL-PGDPGPKGDPGDRGPIGLTGRAGPPGDSGPPGEKGDPGRPGPPGPVGP 1629
Query: 262 TNSGDNMYTLMNAVPPG-PNRP------NFPMGPGSDGPMGGLGGM---ESHHMNGSLGS 311
+ + PPG P P PG GP+G G NGS GS
Sbjct: 1630 RGRDGEVGEKGDEGPPGDPGLPGKAGERGLRGAPGVRGPVGEKGDQGDPGEDGRNGSPGS 1689
Query: 312 ----GDMDSISKNSPNNMSLSNQPGTPRDDGEMG 341
GD P + PG R+ GE G
Sbjct: 1690 SGPKGDRGEPGPPGPPGRLVDTGPGA-REKGEPG 1722
Score = 51.2 bits (121), Expect = 1e-06
Identities = 66/238 (27%), Positives = 83/238 (34%), Gaps = 35/238 (14%)
Query: 120 PGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNM-GGPMQR- 177
PG P PG P PP R+ + G +P P +G P + G P +R
Sbjct: 1687 PGSSGPKGDRGEPGPPGPPGRLVDTGPGAREKGEPGDRGQEGPRGPKGDPGLPGAPGERG 1746
Query: 178 MTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPG-GGRPW-PNPTNANSIPYSSA 235
+ RG P GPQ G +R P G G PG++ G G+P P+ N +
Sbjct: 1747 IEGFRG--PPGPQGDPG-VRGPAGEKGDRGPPGLDGRSGLDGKPGAAGPSGPNGAAGKAG 1803
Query: 236 SPG--------NYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPN-FPM 286
PG G PG GPPG P P PG N N P
Sbjct: 1804 DPGRDGLPGLRGEQGLPGPSGPPGLPGKPGEDGK---------------PGLNGKNGEPG 1848
Query: 287 GPGSDGPMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMGGNF 344
PG DG G G + G D + +P + PG P G G F
Sbjct: 1849 DPGEDGRKGEKGDSGASGREGR----DGPKGERGAPGILGPQGPPGLPGPVGPPGQGF 1902
Score = 47.0 bits (110), Expect = 3e-05
Identities = 65/252 (25%), Positives = 81/252 (32%), Gaps = 45/252 (17%)
Query: 112 GMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNM 171
G+P P P G P SP PG ++ G PG SG D R G P +
Sbjct: 2227 GLPGPPGPSGLVGPQGSPGLPG------QVGETGKPGAPGRDGA--SGKDGDR--GSPGV 2276
Query: 172 GGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGG-PGMPGMNMGPGG------------- 217
G P P+GP+ G P A+ G PG G PGG
Sbjct: 2277 PGS------PGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEKGAPGGLAGDLVGEPGAKG 2330
Query: 218 GRPWPNPTNANSIPYSSASPGN--------YVGPPGGGGPPGTPIMPSPADSTNSGDNMY 269
R P P + PG+ GP G G PG + SP G
Sbjct: 2331 DRGLPGPRGEKGEAGRAGEPGDPGEDGQKGAPGPKGFKGDPGVGVPGSPGPPGPPGVKGD 2390
Query: 270 TLMNAVPPGPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMSLSN 329
+ +P P F PG GP G +G G G + I P +
Sbjct: 2391 LGLPGLPGAPGVVGF---PGQTGPRGEMGQPGPSGERGLAGPPGREGI----PGPLGPPG 2443
Query: 330 QPGTPRDDGEMG 341
PG+ G G
Sbjct: 2444 PPGSVGPPGASG 2455
Score = 45.4 bits (106), Expect = 8e-05
Identities = 48/184 (26%), Positives = 59/184 (32%), Gaps = 34/184 (18%)
Query: 188 GPQNYGGAMRPPLNALGGPGMPGMNMGPG-----------GGRPWPNPTNANSIPYSSAS 236
G G + PP G PG+PG PG G R +P P + +
Sbjct: 1260 GEMGLRGQVGPP----GDPGLPGRTGAPGPQGPPGSATAKGERGFPGADGRPGSPGRAGN 1315
Query: 237 PGNYVGP--------------PGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRP 282
PG P PG GP G P G+ PGP+ P
Sbjct: 1316 PGTPGAPGLKGSPGLPGPRGDPGERGPRGPKGEPGAPGQVIGGEGPGLPGRKGDPGPSGP 1375
Query: 283 NFPMGP-GSDGPMG--GLGGMESHHMNGSLGSGDMDSISKN--SPNNMSLSNQPGTPRDD 337
P GP G GP G GL G G G + +P L PG+P
Sbjct: 1376 PGPRGPLGDPGPRGPPGLPGTAMKGDKGDRGERGPPGPGEGGIAPGEPGLPGLPGSPGPQ 1435
Query: 338 GEMG 341
G +G
Sbjct: 1436 GPVG 1439
Score = 44.3 bits (103), Expect = 2e-04
Identities = 69/237 (29%), Positives = 82/237 (34%), Gaps = 48/237 (20%)
Query: 108 PPGD-GMPVGPVPPGFFQPFMSP---------RYPGGPR----PPLRIPNQALGGVPGSQ 153
P GD G+P P G + F P R P G + PP L G PG+
Sbjct: 1732 PKGDPGLPGAPGERGI-EGFRGPPGPQGDPGVRGPAGEKGDRGPPGLDGRSGLDGKPGAA 1790
Query: 154 -PLLPSGM-----DPTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGG-P 206
P P+G DP R G P + G Q + P G L P G +P LN G P
Sbjct: 1791 GPSGPNGAAGKAGDPGRD-GLPGLRGE-QGLPGPSGPPGL-PGKPGEDGKPGLNGKNGEP 1847
Query: 207 GMPGMNMGPGGGRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGD 266
G PG + GR + S P G PG GP G P +P P
Sbjct: 1848 GDPGED-----GRKGEKGDSGASGREGRDGPKGERGAPGILGPQGPPGLPGPV------- 1895
Query: 267 NMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMDSISKNSPN 323
GP FP PG GP G G S G G + + PN
Sbjct: 1896 -----------GPPGQGFPGVPGGTGPKGDRGETGSKGEQGLPGERGLRGEPGSVPN 1941
Score = 44.3 bits (103), Expect = 2e-04
Identities = 54/199 (27%), Positives = 61/199 (30%), Gaps = 29/199 (14%)
Query: 148 GVPGSQPLLPSGMDPTR----QQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNAL 203
G PG + P G R +G P GP RG P GP G P
Sbjct: 1988 GPPGKEG--PIGFPGERGLKGDRGDPGPQGPPGLALGERG--PPGPSGLAGEPGKP---- 2039
Query: 204 GGPGMPGMNMGPG-GGRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPADST 262
G PG+PG G G GRP GPPG G PG P P P S
Sbjct: 2040 GIPGLPGRAGGVGEAGRPGERGERGEK---GERGEQGRDGPPGLPGTPGPPGPPGPKVSV 2096
Query: 263 NSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMDSISKNSP 322
+ PGP PG G G G G G + + P
Sbjct: 2097 DE------------PGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGDRGVPGIKG-DRGEP 2143
Query: 323 NNMSLSNQPGTPRDDGEMG 341
PG P + G G
Sbjct: 2144 GPRGQDGNPGLPGERGMAG 2162
Score = 35.8 bits (81), Expect = 0.061
Identities = 34/132 (25%), Positives = 43/132 (32%), Gaps = 10/132 (7%)
Query: 219 RPWPNPTNANSIPYSSASPGNY-----VGPPGGGGPPGTPIMPS----PADSTNSGDNMY 269
+P P P PG VGPPG G PG P P +T G+ +
Sbjct: 1241 QPRPEPCPVYCPKGQKGEPGEMGLRGQVGPPGDPGLPGRTGAPGPQGPPGSATAKGERGF 1300
Query: 270 TLMNAVPPGPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMSLSN 329
+ P P R P PG+ G G G G G +P +
Sbjct: 1301 PGADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRGPKG-EPGAPGQVIGGE 1359
Query: 330 QPGTPRDDGEMG 341
PG P G+ G
Sbjct: 1360 GPGLPGRKGDPG 1371
Score = 35.4 bits (80), Expect = 0.080
Identities = 27/109 (24%), Positives = 34/109 (31%), Gaps = 13/109 (11%)
Query: 203 LGGPGMPGMNMGPG-------------GGRPWPNPTNANSIPYSSASPGNYVGPPGGGGP 249
+G PG+PG + PG G+P P + G + GP G G
Sbjct: 2661 MGEPGVPGQSGAPGKEGLIGPKGDRGFDGQPGPKGDQGEKGERGTPGIGGFPGPSGNDGS 2720
Query: 250 PGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLG 298
G P P PPG P PG+ G G G
Sbjct: 2721 AGPPGPPGSVGPRGPEGLQGQKGERGPPGERVVGAPGVPGAPGERGEQG 2769
>gi|21389357 MAPK-interacting and spindle-stabilizing protein [Homo
sapiens]
Length = 245
Score = 66.6 bits (161), Expect = 3e-11
Identities = 70/227 (30%), Positives = 83/227 (36%), Gaps = 45/227 (19%)
Query: 98 AAPSPVLGNIPPG---DGMPVGPVPPGFFQ---PFMSPRYPGGPRPPLRIPNQALGGVPG 151
+APS V +PP +P GP P G + P P P P PP P+ G P
Sbjct: 44 SAPSSVPSGLPPSATPSTVPFGPAPTGMYPSVPPTGPPPGPPAPFPPSG-PSCPPPGGPY 102
Query: 152 SQPLLP----SGMDPTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPG 207
P +P +G PT P + P T P PLGP G+M GP
Sbjct: 103 PAPTVPGPGPTGPYPTPNMPFPELPRPYGAPTDPAAAGPLGP---WGSMS------SGPW 153
Query: 208 MPGMNMGPGGGRPWPNPTNANSIPYSSASPGNYVG----------PPGGGGPPGTPIMPS 257
PGM GG P PN + PY + P G PPG GPP P+
Sbjct: 154 APGM----GGQYPTPNMPYPSPGPYPAPPPPQAPGAAPPVPWGTVPPGAWGPPAP--YPA 207
Query: 258 PADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGMESHH 304
P S Y P N P GP PM GG S+H
Sbjct: 208 PTGS-------YPTPGLYPTPSNPFQVPSGPSGAPPMP--GGPHSYH 245
Score = 42.4 bits (98), Expect = 7e-04
Identities = 35/126 (27%), Positives = 41/126 (32%), Gaps = 31/126 (24%)
Query: 206 PGMPGMNMGPGGGRPWPNPTNANSIP-------------YSSASPGNYVGPPGGGGPPGT 252
PG P G G PW NP+ +S+P + A G Y P G PPG
Sbjct: 27 PGQPPQ--GWPGSNPWNNPSAPSSVPSGLPPSATPSTVPFGPAPTGMYPSVPPTGPPPGP 84
Query: 253 PI-MPSPADSTNSGDNMYTLMNAVPPGPNRP---------------NFPMGPGSDGPMGG 296
P P S Y PGP P P P + GP+G
Sbjct: 85 PAPFPPSGPSCPPPGGPYPAPTVPGPGPTGPYPTPNMPFPELPRPYGAPTDPAAAGPLGP 144
Query: 297 LGGMES 302
G M S
Sbjct: 145 WGSMSS 150
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 66.2 bits (160), Expect = 4e-11
Identities = 82/280 (29%), Positives = 94/280 (33%), Gaps = 62/280 (22%)
Query: 97 AAAPSPVLGNIPPGDGMPVG-PVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPG--SQ 153
AA P G PPGD P G P P GF P PG P P +GG G
Sbjct: 1301 AAGPPGAKG--PPGDDGPKGNPGPVGF------PGDPGPPGEPGPAGQDGVGGDKGEDGD 1352
Query: 154 PLLPSGMDPTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNM 213
P P P+ + G P GP + PP G Q GA + A G PG G +
Sbjct: 1353 PGQPGPPGPSGEAGPP---GPPGKRGPPGAAGAEGRQGEKGA-KGEAGAEGPPGKTG-PV 1407
Query: 214 GPGGGRPWPNPTNANSIPYSSASPG-----NYVGPPGGGGPPGTP--------------- 253
GP G P P IP G GPPG GPPG P
Sbjct: 1408 GPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHP 1467
Query: 254 ----IMPSPADSTNSGDNMYTLMNAVP--------PGPNRPNFPMG-PGSDGPMGGLGGM 300
++ P + GD P PGP P P G PG GP G G
Sbjct: 1468 GLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNK 1527
Query: 301 ESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEM 340
S G G + L PG+P GE+
Sbjct: 1528 GSTGPAGQKG-------------DSGLPGPPGSPGPPGEV 1554
Score = 65.5 bits (158), Expect = 7e-11
Identities = 65/233 (27%), Positives = 79/233 (33%), Gaps = 39/233 (16%)
Query: 117 PVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQ-------PLLPSGMD----PTRQ 165
P PPG P +P GG P Q + G G + P P G+ P +
Sbjct: 1161 PGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGE 1220
Query: 166 QGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPP-----LNALGGPGMPGMNMGPG---- 216
+G GPM PP P GP G PP + +G G PG PG
Sbjct: 1221 KGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGE 1280
Query: 217 ---GGRPWPNPTNANSIPYSSASPGNYVGPPGGGGP------------PGTPIMPSPADS 261
GG + P +A P GPPG GP PG P P PA
Sbjct: 1281 AGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQ 1340
Query: 262 TNSGDNMYTLMNAVPPGPNRPNFPMG----PGSDGPMGGLGGMESHHMNGSLG 310
G + + PGP P+ G PG GP G G G+ G
Sbjct: 1341 DGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKG 1393
Score = 59.3 bits (142), Expect = 5e-09
Identities = 76/268 (28%), Positives = 92/268 (34%), Gaps = 47/268 (17%)
Query: 108 PPGDGMPVGPV-PPGFFQPFMSPRYPGGPRPPLR--IPN-QALGGVPGSQPLLPSGMDPT 163
PPG P G + PPG P P PG PP R +P L G PG+ +LP
Sbjct: 455 PPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPF----- 509
Query: 164 RQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPG------- 216
+ G GP + L Q A+R P +G G PG GPG
Sbjct: 510 -RYGGDGSKGPTISAQEAQAQAIL--QQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGE 566
Query: 217 GGRPWP-NPTNANSIPYSSASPG--NYVGPPGGGGPPGTP----------IMPSPADSTN 263
G P P P P + PG G GG G PG P + P D +
Sbjct: 567 SGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGH 626
Query: 264 SGDNMYTLMNAVPPGPNRPNFPMG----------PGSDGPMGGLGGMESHHMNGSLGSGD 313
G+ PPGP + G PG GP G LG + G G
Sbjct: 627 RGER----GPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAG 682
Query: 314 MDSISKNSPNNMSLSNQPGTPRDDGEMG 341
+D NM +PG P G G
Sbjct: 683 VDG-PPGPKGNMGPQGEPGPPGQQGNPG 709
Score = 57.4 bits (137), Expect = 2e-08
Identities = 68/247 (27%), Positives = 86/247 (34%), Gaps = 41/247 (16%)
Query: 108 PPGDGMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQG 167
PPG+ P GP P F PG PP L G PG + +G + G
Sbjct: 926 PPGERGPQGPQGPVGF--------PGPKGPPGPPGKDGLPGHPGQRG--ETGFQ--GKTG 973
Query: 168 HPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGM--------NMGPGGGR 219
P GG + P P+G + + G PP G G+PG + GP G
Sbjct: 974 PPGPGGVVGPQGPTGETGPIGERGHPGPPGPP----GEQGLPGAAGKEGAKGDPGPQGIS 1029
Query: 220 PWPNPTNANSIPYSSASPGNYVGP--PGGGGPPGTP-IMPSPADSTNSGDNMYTLMNAVP 276
P P PG P GG GP G P + SP + ++G A P
Sbjct: 1030 GKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAG-------TAGP 1082
Query: 277 PGPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMDSIS--KNSPNNMSLSNQPGTP 334
G P PG GP G G + G G D + P + PG
Sbjct: 1083 IG-----LPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGED 1137
Query: 335 RDDGEMG 341
D GE+G
Sbjct: 1138 GDKGEIG 1144
Score = 55.1 bits (131), Expect = 1e-07
Identities = 68/262 (25%), Positives = 85/262 (32%), Gaps = 29/262 (11%)
Query: 96 AAAAPSPVLGNIPPGDGMPVGPV----PPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPG 151
A AP G P G PVG G P P PG PP + G G
Sbjct: 1049 AQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKG 1108
Query: 152 SQPLLPSGMD----------PTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLN 201
Q P+G D P G P G + P G + G PP
Sbjct: 1109 PQG--PAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPP-- 1164
Query: 202 ALGGP-GMPGMNMGPGGGRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPAD 260
L GP G PG+ G G P P + GPPG P G +P P
Sbjct: 1165 GLQGPVGAPGI--AGGDGEPGPRGQQGMFGQKGDEGARGFPGPPG---PIGLQGLPGPPG 1219
Query: 261 STNSGDNMYTLMNAVPPGPNRPNFPMG-PGSDGPMGGLGGMESHHMNGSLGSGDMDSISK 319
++ + PPGP P P G G GP G +G + G G ++ +
Sbjct: 1220 EKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPG----EAGNP 1275
Query: 320 NSPNNMSLSNQPGTPRDDGEMG 341
P + G + GE G
Sbjct: 1276 GPPGEAGVGGPKGERGEKGEAG 1297
Score = 53.5 bits (127), Expect = 3e-07
Identities = 49/163 (30%), Positives = 61/163 (37%), Gaps = 12/163 (7%)
Query: 181 PRGMVPLGPQNYGGAM-RPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGN 239
PRG+ LGP+ GA +P + + GP P NMGP G P P N P P
Sbjct: 662 PRGL--LGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQG-EPGPPGQQGNPGPQGLPGPQG 718
Query: 240 YVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGP-GSDGPMGGLG 298
+GPPG GP G P + + + + G P P GP G GP G G
Sbjct: 719 PIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKG 778
Query: 299 GMESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMG 341
+ GS G D G D GE+G
Sbjct: 779 ADGVRGLKGSKGEKGEDGFP-------GFKGDMGLKGDRGEVG 814
Score = 50.8 bits (120), Expect = 2e-06
Identities = 55/173 (31%), Positives = 67/173 (38%), Gaps = 35/173 (20%)
Query: 108 PPGDGMPVGPVPP----------GFFQPFMSPRYPG-----GPRPPLRIPN-QALGGVPG 151
PPG PVGP P G P PG GP P+ P L G PG
Sbjct: 1400 PPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPG 1459
Query: 152 SQ-----PLLPSGMDPTRQQGHP-NMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGG 205
S+ P L + P +QG + G P + +P G + GG + P LG
Sbjct: 1460 SKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSP-------GAKGDGG-IPGPAGPLGP 1511
Query: 206 PGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSP 258
PG PG+ GP G P ++ P GPPG GPPG I P P
Sbjct: 1512 PGPPGLP-GPQG----PKGNKGSTGPAGQKGDSGLPGPPGSPGPPGEVIQPLP 1559
Score = 50.1 bits (118), Expect = 3e-06
Identities = 54/198 (27%), Positives = 63/198 (31%), Gaps = 26/198 (13%)
Query: 166 QGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPG--------- 216
+G P GP M PP P GP G PP G PG+PG + PG
Sbjct: 453 EGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPP----GRPGLPGADGLPGPPGTMLMLP 508
Query: 217 ---GGRPWPNPT-NANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLM 272
GG PT +A + + G GP G P P S
Sbjct: 509 FRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESG 568
Query: 273 NAVPPGPNRPNFPMG----PGSDGPMGGLGGMESHHMNGSLGSGDMDSI-----SKNSPN 323
+ P GP P G PG G G GG G+ G D + K
Sbjct: 569 DPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRG 628
Query: 324 NMSLSNQPGTPRDDGEMG 341
PG P DDG G
Sbjct: 629 ERGPQGPPGPPGDDGMRG 646
Score = 50.1 bits (118), Expect = 3e-06
Identities = 72/263 (27%), Positives = 89/263 (33%), Gaps = 46/263 (17%)
Query: 112 GMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQ----PLLPSGM----DPT 163
G+P P PG P S +PG P + + G PG + P P G PT
Sbjct: 850 GVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPT 909
Query: 164 RQQGHPNMGGPMQRMTPPRGMVPLGPQN---YGGAMRPPLNALGGPGMPGMNMGPGG--- 217
+ G G PP P GPQ + G PP G PG G+ PG
Sbjct: 910 GKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPP----GPPGKDGLPGHPGQRGE 965
Query: 218 -------GRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTNS-GDNMY 269
G P P P P G PG GPPG +P A + GD
Sbjct: 966 TGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGD--- 1022
Query: 270 TLMNAVPPGPNRPNFPMG----------PGSDGPMGGLGGMESHHMNGSLGS-GDMDSIS 318
P G + + P G PG+ G G GG G +GS G+ S
Sbjct: 1023 ----PGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAG 1078
Query: 319 KNSPNNMSLSNQPGTPRDDGEMG 341
P + L +PG G G
Sbjct: 1079 TAGP--IGLPGRPGPQGPPGPAG 1099
Score = 45.4 bits (106), Expect = 8e-05
Identities = 76/282 (26%), Positives = 89/282 (31%), Gaps = 51/282 (18%)
Query: 108 PPGDGMPVG-PVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPL--LPSGMDPTR 164
P G+ P G P PPG Q P+ GP+ P+ P + G G L LP P
Sbjct: 689 PKGNMGPQGEPGPPGQ-QGNPGPQGLPGPQGPIGPPGEK--GPQGKPGLAGLPGADGPPG 745
Query: 165 QQGHPNMGGPMQRMTPPRGMVPLG---PQNYGGA-----MRPPLNALGGPGMPGM--NMG 214
G G + PP P+G P+ GA ++ G G PG +MG
Sbjct: 746 HPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMG 805
Query: 215 PGG-----------GRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMP---SPAD 260
G G P + P P G G G PG P P P
Sbjct: 806 LKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKG 865
Query: 261 STN----SGDNMYTLMNAV--PPGPNRPNFPMGP----------GSDGPMGGLGGMESHH 304
ST G N V PGP P GP G GP G GG
Sbjct: 866 STGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPG 925
Query: 305 MNGSLG-SGDMDSIS----KNSPNNMSLSNQPGTPRDDGEMG 341
G G G + K P PG P GE G
Sbjct: 926 PPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETG 967
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 66.2 bits (160), Expect = 4e-11
Identities = 82/280 (29%), Positives = 94/280 (33%), Gaps = 62/280 (22%)
Query: 97 AAAPSPVLGNIPPGDGMPVG-PVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPG--SQ 153
AA P G PPGD P G P P GF P PG P P +GG G
Sbjct: 1250 AAGPPGAKG--PPGDDGPKGNPGPVGF------PGDPGPPGEPGPAGQDGVGGDKGEDGD 1301
Query: 154 PLLPSGMDPTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNM 213
P P P+ + G P GP + PP G Q GA + A G PG G +
Sbjct: 1302 PGQPGPPGPSGEAGPP---GPPGKRGPPGAAGAEGRQGEKGA-KGEAGAEGPPGKTG-PV 1356
Query: 214 GPGGGRPWPNPTNANSIPYSSASPG-----NYVGPPGGGGPPGTP--------------- 253
GP G P P IP G GPPG GPPG P
Sbjct: 1357 GPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHP 1416
Query: 254 ----IMPSPADSTNSGDNMYTLMNAVP--------PGPNRPNFPMG-PGSDGPMGGLGGM 300
++ P + GD P PGP P P G PG GP G G
Sbjct: 1417 GLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNK 1476
Query: 301 ESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEM 340
S G G + L PG+P GE+
Sbjct: 1477 GSTGPAGQKG-------------DSGLPGPPGSPGPPGEV 1503
Score = 65.5 bits (158), Expect = 7e-11
Identities = 65/233 (27%), Positives = 79/233 (33%), Gaps = 39/233 (16%)
Query: 117 PVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQ-------PLLPSGMD----PTRQ 165
P PPG P +P GG P Q + G G + P P G+ P +
Sbjct: 1110 PGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGE 1169
Query: 166 QGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPP-----LNALGGPGMPGMNMGPG---- 216
+G GPM PP P GP G PP + +G G PG PG
Sbjct: 1170 KGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGE 1229
Query: 217 ---GGRPWPNPTNANSIPYSSASPGNYVGPPGGGGP------------PGTPIMPSPADS 261
GG + P +A P GPPG GP PG P P PA
Sbjct: 1230 AGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQ 1289
Query: 262 TNSGDNMYTLMNAVPPGPNRPNFPMG----PGSDGPMGGLGGMESHHMNGSLG 310
G + + PGP P+ G PG GP G G G+ G
Sbjct: 1290 DGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKG 1342
Score = 59.3 bits (142), Expect = 5e-09
Identities = 76/268 (28%), Positives = 92/268 (34%), Gaps = 47/268 (17%)
Query: 108 PPGDGMPVGPV-PPGFFQPFMSPRYPGGPRPPLR--IPN-QALGGVPGSQPLLPSGMDPT 163
PPG P G + PPG P P PG PP R +P L G PG+ +LP
Sbjct: 404 PPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPF----- 458
Query: 164 RQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPG------- 216
+ G GP + L Q A+R P +G G PG GPG
Sbjct: 459 -RYGGDGSKGPTISAQEAQAQAIL--QQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGE 515
Query: 217 GGRPWP-NPTNANSIPYSSASPG--NYVGPPGGGGPPGTP----------IMPSPADSTN 263
G P P P P + PG G GG G PG P + P D +
Sbjct: 516 SGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGH 575
Query: 264 SGDNMYTLMNAVPPGPNRPNFPMG----------PGSDGPMGGLGGMESHHMNGSLGSGD 313
G+ PPGP + G PG GP G LG + G G
Sbjct: 576 RGER----GPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAG 631
Query: 314 MDSISKNSPNNMSLSNQPGTPRDDGEMG 341
+D NM +PG P G G
Sbjct: 632 VDG-PPGPKGNMGPQGEPGPPGQQGNPG 658
Score = 57.4 bits (137), Expect = 2e-08
Identities = 68/247 (27%), Positives = 86/247 (34%), Gaps = 41/247 (16%)
Query: 108 PPGDGMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQG 167
PPG+ P GP P F PG PP L G PG + +G + G
Sbjct: 875 PPGERGPQGPQGPVGF--------PGPKGPPGPPGKDGLPGHPGQRG--ETGFQ--GKTG 922
Query: 168 HPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGM--------NMGPGGGR 219
P GG + P P+G + + G PP G G+PG + GP G
Sbjct: 923 PPGPGGVVGPQGPTGETGPIGERGHPGPPGPP----GEQGLPGAAGKEGAKGDPGPQGIS 978
Query: 220 PWPNPTNANSIPYSSASPGNYVGP--PGGGGPPGTP-IMPSPADSTNSGDNMYTLMNAVP 276
P P PG P GG GP G P + SP + ++G A P
Sbjct: 979 GKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAG-------TAGP 1031
Query: 277 PGPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMDSIS--KNSPNNMSLSNQPGTP 334
G P PG GP G G + G G D + P + PG
Sbjct: 1032 IG-----LPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGED 1086
Query: 335 RDDGEMG 341
D GE+G
Sbjct: 1087 GDKGEIG 1093
Score = 55.1 bits (131), Expect = 1e-07
Identities = 68/262 (25%), Positives = 85/262 (32%), Gaps = 29/262 (11%)
Query: 96 AAAAPSPVLGNIPPGDGMPVGPV----PPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPG 151
A AP G P G PVG G P P PG PP + G G
Sbjct: 998 AQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKG 1057
Query: 152 SQPLLPSGMD----------PTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLN 201
Q P+G D P G P G + P G + G PP
Sbjct: 1058 PQG--PAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPP-- 1113
Query: 202 ALGGP-GMPGMNMGPGGGRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPAD 260
L GP G PG+ G G P P + GPPG P G +P P
Sbjct: 1114 GLQGPVGAPGI--AGGDGEPGPRGQQGMFGQKGDEGARGFPGPPG---PIGLQGLPGPPG 1168
Query: 261 STNSGDNMYTLMNAVPPGPNRPNFPMG-PGSDGPMGGLGGMESHHMNGSLGSGDMDSISK 319
++ + PPGP P P G G GP G +G + G G ++ +
Sbjct: 1169 EKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPG----EAGNP 1224
Query: 320 NSPNNMSLSNQPGTPRDDGEMG 341
P + G + GE G
Sbjct: 1225 GPPGEAGVGGPKGERGEKGEAG 1246
Score = 53.5 bits (127), Expect = 3e-07
Identities = 49/163 (30%), Positives = 61/163 (37%), Gaps = 12/163 (7%)
Query: 181 PRGMVPLGPQNYGGAM-RPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGN 239
PRG+ LGP+ GA +P + + GP P NMGP G P P N P P
Sbjct: 611 PRGL--LGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQG-EPGPPGQQGNPGPQGLPGPQG 667
Query: 240 YVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGP-GSDGPMGGLG 298
+GPPG GP G P + + + + G P P GP G GP G G
Sbjct: 668 PIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKG 727
Query: 299 GMESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMG 341
+ GS G D G D GE+G
Sbjct: 728 ADGVRGLKGSKGEKGEDGFP-------GFKGDMGLKGDRGEVG 763
Score = 50.8 bits (120), Expect = 2e-06
Identities = 55/173 (31%), Positives = 67/173 (38%), Gaps = 35/173 (20%)
Query: 108 PPGDGMPVGPVPP----------GFFQPFMSPRYPG-----GPRPPLRIPN-QALGGVPG 151
PPG PVGP P G P PG GP P+ P L G PG
Sbjct: 1349 PPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPG 1408
Query: 152 SQ-----PLLPSGMDPTRQQGHP-NMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGG 205
S+ P L + P +QG + G P + +P G + GG + P LG
Sbjct: 1409 SKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSP-------GAKGDGG-IPGPAGPLGP 1460
Query: 206 PGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSP 258
PG PG+ GP G P ++ P GPPG GPPG I P P
Sbjct: 1461 PGPPGLP-GPQG----PKGNKGSTGPAGQKGDSGLPGPPGSPGPPGEVIQPLP 1508
Score = 50.1 bits (118), Expect = 3e-06
Identities = 54/198 (27%), Positives = 63/198 (31%), Gaps = 26/198 (13%)
Query: 166 QGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPG--------- 216
+G P GP M PP P GP G PP G PG+PG + PG
Sbjct: 402 EGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPP----GRPGLPGADGLPGPPGTMLMLP 457
Query: 217 ---GGRPWPNPT-NANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLM 272
GG PT +A + + G GP G P P S
Sbjct: 458 FRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESG 517
Query: 273 NAVPPGPNRPNFPMG----PGSDGPMGGLGGMESHHMNGSLGSGDMDSI-----SKNSPN 323
+ P GP P G PG G G GG G+ G D + K
Sbjct: 518 DPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRG 577
Query: 324 NMSLSNQPGTPRDDGEMG 341
PG P DDG G
Sbjct: 578 ERGPQGPPGPPGDDGMRG 595
Score = 50.1 bits (118), Expect = 3e-06
Identities = 72/263 (27%), Positives = 89/263 (33%), Gaps = 46/263 (17%)
Query: 112 GMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQ----PLLPSGM----DPT 163
G+P P PG P S +PG P + + G PG + P P G PT
Sbjct: 799 GVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPT 858
Query: 164 RQQGHPNMGGPMQRMTPPRGMVPLGPQN---YGGAMRPPLNALGGPGMPGMNMGPGG--- 217
+ G G PP P GPQ + G PP G PG G+ PG
Sbjct: 859 GKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPP----GPPGKDGLPGHPGQRGE 914
Query: 218 -------GRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTNS-GDNMY 269
G P P P P G PG GPPG +P A + GD
Sbjct: 915 TGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGD--- 971
Query: 270 TLMNAVPPGPNRPNFPMG----------PGSDGPMGGLGGMESHHMNGSLGS-GDMDSIS 318
P G + + P G PG+ G G GG G +GS G+ S
Sbjct: 972 ----PGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAG 1027
Query: 319 KNSPNNMSLSNQPGTPRDDGEMG 341
P + L +PG G G
Sbjct: 1028 TAGP--IGLPGRPGPQGPPGPAG 1048
Score = 45.4 bits (106), Expect = 8e-05
Identities = 76/282 (26%), Positives = 89/282 (31%), Gaps = 51/282 (18%)
Query: 108 PPGDGMPVG-PVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPL--LPSGMDPTR 164
P G+ P G P PPG Q P+ GP+ P+ P + G G L LP P
Sbjct: 638 PKGNMGPQGEPGPPGQ-QGNPGPQGLPGPQGPIGPPGEK--GPQGKPGLAGLPGADGPPG 694
Query: 165 QQGHPNMGGPMQRMTPPRGMVPLG---PQNYGGA-----MRPPLNALGGPGMPGM--NMG 214
G G + PP P+G P+ GA ++ G G PG +MG
Sbjct: 695 HPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMG 754
Query: 215 PGG-----------GRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMP---SPAD 260
G G P + P P G G G PG P P P
Sbjct: 755 LKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKG 814
Query: 261 STN----SGDNMYTLMNAV--PPGPNRPNFPMGP----------GSDGPMGGLGGMESHH 304
ST G N V PGP P GP G GP G GG
Sbjct: 815 STGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPG 874
Query: 305 MNGSLG-SGDMDSIS----KNSPNNMSLSNQPGTPRDDGEMG 341
G G G + K P PG P GE G
Sbjct: 875 PPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETG 916
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 66.2 bits (160), Expect = 4e-11
Identities = 82/280 (29%), Positives = 94/280 (33%), Gaps = 62/280 (22%)
Query: 97 AAAPSPVLGNIPPGDGMPVG-PVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPG--SQ 153
AA P G PPGD P G P P GF P PG P P +GG G
Sbjct: 1289 AAGPPGAKG--PPGDDGPKGNPGPVGF------PGDPGPPGEPGPAGQDGVGGDKGEDGD 1340
Query: 154 PLLPSGMDPTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNM 213
P P P+ + G P GP + PP G Q GA + A G PG G +
Sbjct: 1341 PGQPGPPGPSGEAGPP---GPPGKRGPPGAAGAEGRQGEKGA-KGEAGAEGPPGKTG-PV 1395
Query: 214 GPGGGRPWPNPTNANSIPYSSASPG-----NYVGPPGGGGPPGTP--------------- 253
GP G P P IP G GPPG GPPG P
Sbjct: 1396 GPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHP 1455
Query: 254 ----IMPSPADSTNSGDNMYTLMNAVP--------PGPNRPNFPMG-PGSDGPMGGLGGM 300
++ P + GD P PGP P P G PG GP G G
Sbjct: 1456 GLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNK 1515
Query: 301 ESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEM 340
S G G + L PG+P GE+
Sbjct: 1516 GSTGPAGQKG-------------DSGLPGPPGSPGPPGEV 1542
Score = 65.5 bits (158), Expect = 7e-11
Identities = 65/233 (27%), Positives = 79/233 (33%), Gaps = 39/233 (16%)
Query: 117 PVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQ-------PLLPSGMD----PTRQ 165
P PPG P +P GG P Q + G G + P P G+ P +
Sbjct: 1149 PGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGE 1208
Query: 166 QGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPP-----LNALGGPGMPGMNMGPG---- 216
+G GPM PP P GP G PP + +G G PG PG
Sbjct: 1209 KGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGE 1268
Query: 217 ---GGRPWPNPTNANSIPYSSASPGNYVGPPGGGGP------------PGTPIMPSPADS 261
GG + P +A P GPPG GP PG P P PA
Sbjct: 1269 AGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQ 1328
Query: 262 TNSGDNMYTLMNAVPPGPNRPNFPMG----PGSDGPMGGLGGMESHHMNGSLG 310
G + + PGP P+ G PG GP G G G+ G
Sbjct: 1329 DGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKG 1381
Score = 59.3 bits (142), Expect = 5e-09
Identities = 76/268 (28%), Positives = 92/268 (34%), Gaps = 47/268 (17%)
Query: 108 PPGDGMPVGPV-PPGFFQPFMSPRYPGGPRPPLR--IPN-QALGGVPGSQPLLPSGMDPT 163
PPG P G + PPG P P PG PP R +P L G PG+ +LP
Sbjct: 443 PPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPF----- 497
Query: 164 RQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPG------- 216
+ G GP + L Q A+R P +G G PG GPG
Sbjct: 498 -RYGGDGSKGPTISAQEAQAQAIL--QQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGE 554
Query: 217 GGRPWP-NPTNANSIPYSSASPG--NYVGPPGGGGPPGTP----------IMPSPADSTN 263
G P P P P + PG G GG G PG P + P D +
Sbjct: 555 SGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGH 614
Query: 264 SGDNMYTLMNAVPPGPNRPNFPMG----------PGSDGPMGGLGGMESHHMNGSLGSGD 313
G+ PPGP + G PG GP G LG + G G
Sbjct: 615 RGER----GPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAG 670
Query: 314 MDSISKNSPNNMSLSNQPGTPRDDGEMG 341
+D NM +PG P G G
Sbjct: 671 VDG-PPGPKGNMGPQGEPGPPGQQGNPG 697
Score = 57.4 bits (137), Expect = 2e-08
Identities = 68/247 (27%), Positives = 86/247 (34%), Gaps = 41/247 (16%)
Query: 108 PPGDGMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQG 167
PPG+ P GP P F PG PP L G PG + +G + G
Sbjct: 914 PPGERGPQGPQGPVGF--------PGPKGPPGPPGKDGLPGHPGQRG--ETGFQ--GKTG 961
Query: 168 HPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGM--------NMGPGGGR 219
P GG + P P+G + + G PP G G+PG + GP G
Sbjct: 962 PPGPGGVVGPQGPTGETGPIGERGHPGPPGPP----GEQGLPGAAGKEGAKGDPGPQGIS 1017
Query: 220 PWPNPTNANSIPYSSASPGNYVGP--PGGGGPPGTP-IMPSPADSTNSGDNMYTLMNAVP 276
P P PG P GG GP G P + SP + ++G A P
Sbjct: 1018 GKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAG-------TAGP 1070
Query: 277 PGPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMDSIS--KNSPNNMSLSNQPGTP 334
G P PG GP G G + G G D + P + PG
Sbjct: 1071 IG-----LPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGED 1125
Query: 335 RDDGEMG 341
D GE+G
Sbjct: 1126 GDKGEIG 1132
Score = 55.1 bits (131), Expect = 1e-07
Identities = 68/262 (25%), Positives = 85/262 (32%), Gaps = 29/262 (11%)
Query: 96 AAAAPSPVLGNIPPGDGMPVGPV----PPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPG 151
A AP G P G PVG G P P PG PP + G G
Sbjct: 1037 AQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKG 1096
Query: 152 SQPLLPSGMD----------PTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLN 201
Q P+G D P G P G + P G + G PP
Sbjct: 1097 PQG--PAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPP-- 1152
Query: 202 ALGGP-GMPGMNMGPGGGRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPAD 260
L GP G PG+ G G P P + GPPG P G +P P
Sbjct: 1153 GLQGPVGAPGI--AGGDGEPGPRGQQGMFGQKGDEGARGFPGPPG---PIGLQGLPGPPG 1207
Query: 261 STNSGDNMYTLMNAVPPGPNRPNFPMG-PGSDGPMGGLGGMESHHMNGSLGSGDMDSISK 319
++ + PPGP P P G G GP G +G + G G ++ +
Sbjct: 1208 EKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPG----EAGNP 1263
Query: 320 NSPNNMSLSNQPGTPRDDGEMG 341
P + G + GE G
Sbjct: 1264 GPPGEAGVGGPKGERGEKGEAG 1285
Score = 53.5 bits (127), Expect = 3e-07
Identities = 49/163 (30%), Positives = 61/163 (37%), Gaps = 12/163 (7%)
Query: 181 PRGMVPLGPQNYGGAM-RPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGN 239
PRG+ LGP+ GA +P + + GP P NMGP G P P N P P
Sbjct: 650 PRGL--LGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQG-EPGPPGQQGNPGPQGLPGPQG 706
Query: 240 YVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGP-GSDGPMGGLG 298
+GPPG GP G P + + + + G P P GP G GP G G
Sbjct: 707 PIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKG 766
Query: 299 GMESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMG 341
+ GS G D G D GE+G
Sbjct: 767 ADGVRGLKGSKGEKGEDGFP-------GFKGDMGLKGDRGEVG 802
Score = 50.8 bits (120), Expect = 2e-06
Identities = 55/173 (31%), Positives = 67/173 (38%), Gaps = 35/173 (20%)
Query: 108 PPGDGMPVGPVPP----------GFFQPFMSPRYPG-----GPRPPLRIPN-QALGGVPG 151
PPG PVGP P G P PG GP P+ P L G PG
Sbjct: 1388 PPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPG 1447
Query: 152 SQ-----PLLPSGMDPTRQQGHP-NMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGG 205
S+ P L + P +QG + G P + +P G + GG + P LG
Sbjct: 1448 SKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSP-------GAKGDGG-IPGPAGPLGP 1499
Query: 206 PGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSP 258
PG PG+ GP G P ++ P GPPG GPPG I P P
Sbjct: 1500 PGPPGLP-GPQG----PKGNKGSTGPAGQKGDSGLPGPPGSPGPPGEVIQPLP 1547
Score = 50.1 bits (118), Expect = 3e-06
Identities = 54/198 (27%), Positives = 63/198 (31%), Gaps = 26/198 (13%)
Query: 166 QGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPG--------- 216
+G P GP M PP P GP G PP G PG+PG + PG
Sbjct: 441 EGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPP----GRPGLPGADGLPGPPGTMLMLP 496
Query: 217 ---GGRPWPNPT-NANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLM 272
GG PT +A + + G GP G P P S
Sbjct: 497 FRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESG 556
Query: 273 NAVPPGPNRPNFPMG----PGSDGPMGGLGGMESHHMNGSLGSGDMDSI-----SKNSPN 323
+ P GP P G PG G G GG G+ G D + K
Sbjct: 557 DPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRG 616
Query: 324 NMSLSNQPGTPRDDGEMG 341
PG P DDG G
Sbjct: 617 ERGPQGPPGPPGDDGMRG 634
Score = 50.1 bits (118), Expect = 3e-06
Identities = 72/263 (27%), Positives = 89/263 (33%), Gaps = 46/263 (17%)
Query: 112 GMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQ----PLLPSGM----DPT 163
G+P P PG P S +PG P + + G PG + P P G PT
Sbjct: 838 GVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPT 897
Query: 164 RQQGHPNMGGPMQRMTPPRGMVPLGPQN---YGGAMRPPLNALGGPGMPGMNMGPGG--- 217
+ G G PP P GPQ + G PP G PG G+ PG
Sbjct: 898 GKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPP----GPPGKDGLPGHPGQRGE 953
Query: 218 -------GRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTNS-GDNMY 269
G P P P P G PG GPPG +P A + GD
Sbjct: 954 TGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGD--- 1010
Query: 270 TLMNAVPPGPNRPNFPMG----------PGSDGPMGGLGGMESHHMNGSLGS-GDMDSIS 318
P G + + P G PG+ G G GG G +GS G+ S
Sbjct: 1011 ----PGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAG 1066
Query: 319 KNSPNNMSLSNQPGTPRDDGEMG 341
P + L +PG G G
Sbjct: 1067 TAGP--IGLPGRPGPQGPPGPAG 1087
Score = 45.4 bits (106), Expect = 8e-05
Identities = 76/282 (26%), Positives = 89/282 (31%), Gaps = 51/282 (18%)
Query: 108 PPGDGMPVG-PVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPL--LPSGMDPTR 164
P G+ P G P PPG Q P+ GP+ P+ P + G G L LP P
Sbjct: 677 PKGNMGPQGEPGPPGQ-QGNPGPQGLPGPQGPIGPPGEK--GPQGKPGLAGLPGADGPPG 733
Query: 165 QQGHPNMGGPMQRMTPPRGMVPLG---PQNYGGA-----MRPPLNALGGPGMPGM--NMG 214
G G + PP P+G P+ GA ++ G G PG +MG
Sbjct: 734 HPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMG 793
Query: 215 PGG-----------GRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMP---SPAD 260
G G P + P P G G G PG P P P
Sbjct: 794 LKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKG 853
Query: 261 STN----SGDNMYTLMNAV--PPGPNRPNFPMGP----------GSDGPMGGLGGMESHH 304
ST G N V PGP P GP G GP G GG
Sbjct: 854 STGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPG 913
Query: 305 MNGSLG-SGDMDSIS----KNSPNNMSLSNQPGTPRDDGEMG 341
G G G + K P PG P GE G
Sbjct: 914 PPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETG 955
>gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo
sapiens]
Length = 1691
Score = 66.2 bits (160), Expect = 4e-11
Identities = 76/244 (31%), Positives = 92/244 (37%), Gaps = 22/244 (9%)
Query: 109 PGDGMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQ-PLLPSGMDPTRQQG 167
P G P P PPG + P G Q G PG PL PSG P ++G
Sbjct: 489 PNTGPPGEPGPPGPWGLIGLPGLKGARGDRGSGGAQGPAGAPGLVGPLGPSG--PKGKKG 546
Query: 168 HPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPG-GGRPWPNPTN 226
P + +Q M RG G Q + G + P G PG+PG+ PG GG+ +P
Sbjct: 547 EPILS-TIQGMPGDRG--DSGSQGFRGVIGEP-GKDGVPGLPGLPGLPGDGGQGFPGEKG 602
Query: 227 ANSIPYSSASPGNYVGPPGGGGP--PGTPIMPS-------PADSTNSGDNMYTLMNAVPP 277
+P PG G PG G P PG +P P G TL +P
Sbjct: 603 LPGLPGEKGHPGP-PGLPGNGLPGLPGPRGLPGDKGKDGLPGQQGLPGSKGITLPCIIPG 661
Query: 278 GPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDD 337
FP PG GP G G + GS GS SP + L PG P
Sbjct: 662 SYGPSGFPGTPGFPGPKGSRGLPGTPGQPGSSGSKG----EPGSPGLVHLPELPGFPGPR 717
Query: 338 GEMG 341
GE G
Sbjct: 718 GEKG 721
Score = 56.6 bits (135), Expect = 3e-08
Identities = 84/314 (26%), Positives = 108/314 (34%), Gaps = 79/314 (25%)
Query: 100 PSPVLGNIPPGDGMPVGPVPPGFFQPFMSPRYPGGPR----------PPLRIPNQALGGV 149
P P + +P G+P G+ P + PG P P L+ P L G
Sbjct: 1189 PGPSITGVPGPAGLPGPKGEKGY--PGIGIGAPGKPGLRGQKGDRGFPGLQGP-AGLPGA 1245
Query: 150 PG-SQPLLPSGM--DPTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGP 206
PG S P L +G DP G P + G R P P GP + G G P
Sbjct: 1246 PGISLPSLIAGQPGDP----GRPGLDGERGRPGPAGPPGPPGPSSNQGDT-------GDP 1294
Query: 207 GMPGMNMGPGGGRPWPNPTNANSIPYSSASPGN-----------YVGPPGGGGPPGTPIM 255
G PG+ GP G P IP S PG ++G PG GPPG P
Sbjct: 1295 GFPGIP-GPKG------PKGDQGIPGFSGLPGELGLKGMRGEPGFMGTPGKVGPPGDPGF 1347
Query: 256 P------SPADST----NSGDNMYTLMNAVPPGP-------NRPNFPMGPGSDGPMG--- 295
P P S+ + G VPPGP P PG+ GP+G
Sbjct: 1348 PGMKGKAGPRGSSGLQGDPGQTPTAEAVQVPPGPLGLPGIDGIPGLTGDPGAQGPVGLQG 1407
Query: 296 --GLGGMESHH-------MNGSLGSGDMDSIS-----KNSPNNMSLSNQPGTPRDDGEMG 341
GL G+ G+LG + + + +P PG P +G
Sbjct: 1408 SKGLPGIPGKDGPSGLPGPPGALGDPGLPGLQGPPGFEGAPGQQGPFGMPGMPGQSMRVG 1467
Query: 342 GNFLNPFQSESYSP 355
+ QSE P
Sbjct: 1468 YTLVKHSQSEQVPP 1481
Score = 52.8 bits (125), Expect = 5e-07
Identities = 71/266 (26%), Positives = 87/266 (32%), Gaps = 53/266 (19%)
Query: 108 PPGDGMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALG--GVPGSQPLLPSGMDPTRQ 165
P DG P PPG P G P+ P G G PG LP T
Sbjct: 136 PGPDGYPGLLGPPGL------PGQKGSKGDPVLAPGSFKGMKGDPG----LPGLDGITGP 185
Query: 166 QGHPNM------GGPMQRMTPPRGMVPLGPQ-NYGGAMRPPLNALGGPGMPGMNMGPGGG 218
QG P GP PP PLGP N G + G G+PG P G
Sbjct: 186 QGAPGFPGAVGPAGPPGLQGPPGPPGPLGPDGNMGLGFQGEKGVKGDVGLPG----PAGP 241
Query: 219 RPWPNPTNANSIPYSSASPGNYVGP---PGGGGPPGTPIMPSPADSTNSGDNMYTLMNAV 275
P P GP PG GPPG P + + + G+
Sbjct: 242 PPSTGELEFMGFPKGKKGSKGEPGPKGFPGISGPPGFPGLGTTGEKGEKGEKGI------ 295
Query: 276 PPGPNRPNFPMG-------PGSDGPMGGLG--------GMESHHMNGSLGSGDM-----D 315
PG P PMG PG G G LG G+E + L D+
Sbjct: 296 -PGLPGPRGPMGSEGVQGPPGQQGKKGTLGFPGLNGFQGIEGQKGDIGLPGPDVFIDIDG 354
Query: 316 SISKNSPNNMSLSNQPGTPRDDGEMG 341
++ +P + + PG D+G G
Sbjct: 355 AVISGNPGDPGVPGLPGLKGDEGIQG 380
Score = 51.2 bits (121), Expect = 1e-06
Identities = 68/240 (28%), Positives = 85/240 (35%), Gaps = 14/240 (5%)
Query: 107 IPPGDGMPVG-PVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPG--SQPLLPSGMDPT 163
I PG P G P PGF P S PG P P ++ G PG P LP P
Sbjct: 658 IIPGSYGPSGFPGTPGFPGPKGSRGLPGTPGQPGSSGSKGEPGSPGLVHLPELPGFPGPR 717
Query: 164 RQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNA-LGGPGMPGMNMGPGGGRPWP 222
++G P G + P + G GA A G PG G+ G G + +
Sbjct: 718 GEKGLPGFPGLPGKDGLPGMIGSPGLPGSKGATGDIFGAENGAPGEQGL-QGLTGHKGFL 776
Query: 223 NPTNANSIPYSSASPGNYVGPPGGGGPPGTP-IMPSPADSTNSGDNMYTLMNAVPPGPNR 281
+ + PG +GP G G PGTP + P +SG + +P P
Sbjct: 777 GDSGLPGLKGVHGKPG-LLGPKGERGSPGTPGQVGQPGTPGSSGPYGIKGKSGLPGAPGF 835
Query: 282 PNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMG 341
P PG G G G S G G K P N L G+P G G
Sbjct: 836 PGISGHPGKKGTRGKKGPPGSIVKKGLPG-------LKGLPGNPGLVGLKGSPGSPGVAG 888
Score = 48.9 bits (115), Expect = 7e-06
Identities = 67/254 (26%), Positives = 92/254 (36%), Gaps = 52/254 (20%)
Query: 131 YPGGPRPPLRIPNQALGGVPGSQPLL-PSGMDPTR-QQGHPNMGGPMQRMTPPRGMVPLG 188
+PG P P + L G+PGS + PSG T ++G GP+ +P R M L
Sbjct: 907 FPGIPGLPGIPGTRGLKGIPGSTGKMGPSGRAGTPGEKGDRGNPGPVGIPSPRRPMSNLW 966
Query: 189 PQNYGGAMRPPLNALGGPGMPGMNMGPG-GGRPWPNPTNANSIPYSSASPGNYVGPPGGG 247
+ G+ + G G PG G GRP P +P + PG G G
Sbjct: 967 LKGDKGSQ----GSAGSNGFPGPRGDKGEAGRPGPP-----GLPGAPGLPGIIKGVSGKP 1017
Query: 248 GPP------------------GTPIMPSPADSTN----------------SGDNMYTLMN 273
GPP G P MP + S GDN T+
Sbjct: 1018 GPPGFMGIRGLPGLKGSSGITGFPGMPGESGSQGIRGSPGLPGASGLPGLKGDNGQTVEI 1077
Query: 274 AVPPG----PNRPNFPMGPGSDGPMGGLGGMESHHMNGSLG-SGDMD-SISKNSPNNMSL 327
+ PG P F G DG +G +G + +G +G SGD+ + P +
Sbjct: 1078 SGSPGPKGQPGESGFKGTKGRDGLIGNIGFPGNKGEDGKVGVSGDVGLPGAPGFPGVAGM 1137
Query: 328 SNQPGTPRDDGEMG 341
+PG P G G
Sbjct: 1138 RGEPGLPGSSGHQG 1151
Score = 43.9 bits (102), Expect = 2e-04
Identities = 61/221 (27%), Positives = 83/221 (37%), Gaps = 38/221 (17%)
Query: 142 PNQALGGVPGSQPLLPSGMD-PTRQQGHPNMGGPMQRMTPPRG----MVPLGPQNYGGAM 196
P + G PG P G+ PT QG G + + RG + P GP+ G M
Sbjct: 44 PEKGARGRPG-----PIGIQGPTGPQGFTGSTG-LSGLKGERGFPGLLGPYGPKGDKGPM 97
Query: 197 RPP----LNALGG-PGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGNYVGPPG---GGG 248
P +N + G PG PG GP G A P PG +GPPG G
Sbjct: 98 GVPGFLGINGIPGHPGQPGPR-GPPGLDGCNGTQGAVGFPGPDGYPG-LLGPPGLPGQKG 155
Query: 249 PPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFP--MGP-------GSDGPMGGLGG 299
G P++ + GD ++ + P FP +GP G GP G LG
Sbjct: 156 SKGDPVLAPGSFKGMKGDPGLPGLDGITGPQGAPGFPGAVGPAGPPGLQGPPGPPGPLG- 214
Query: 300 MESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEM 340
+G++G G K ++ L G P GE+
Sbjct: 215 -----PDGNMGLGFQG--EKGVKGDVGLPGPAGPPPSTGEL 248
Score = 42.7 bits (99), Expect = 5e-04
Identities = 46/176 (26%), Positives = 58/176 (32%), Gaps = 44/176 (25%)
Query: 120 PGFFQPFMSPRYPG-----GPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGP 174
PG P P +PG GPR + L G PG P + P G P + G
Sbjct: 1336 PGKVGPPGDPGFPGMKGKAGPRG-----SSGLQGDPGQTPTAEAVQVPPGPLGLPGIDGI 1390
Query: 175 MQRMTPPRGMVPLGPQNYGG-----------AMRPPLNALGGPGMPGMNMGPGGGRPWPN 223
P P+G Q G + P ALG PG+PG+ PG
Sbjct: 1391 PGLTGDPGAQGPVGLQGSKGLPGIPGKDGPSGLPGPPGALGDPGLPGLQGPPG------- 1443
Query: 224 PTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGP 279
+ G PG GP G P MP + ++ VPP P
Sbjct: 1444 ----------------FEGAPGQQGPFGMPGMPGQSMRVGYTLVKHSQSEQVPPCP 1483
Score = 40.0 bits (92), Expect = 0.003
Identities = 69/272 (25%), Positives = 90/272 (33%), Gaps = 69/272 (25%)
Query: 108 PPGDGMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQ-PLLPSGMD-PTRQ 165
P G P PPGF P + G + IP G+PG + P+ G+ P Q
Sbjct: 264 PGPKGFPGISGPPGF--PGLGTTGEKGEKGEKGIP-----GLPGPRGPMGSEGVQGPPGQ 316
Query: 166 QGH------PNMGGPMQRMTPPRGMVPL-GPQNY----GGAMRPPLNALGGPGMPGMNMG 214
QG P + G Q + +G + L GP + G + G PG+PG+ G
Sbjct: 317 QGKKGTLGFPGLNG-FQGIEGQKGDIGLPGPDVFIDIDGAVISGNPGDPGVPGLPGLK-G 374
Query: 215 PGGGRPWPNPTNANSIPYSSASPG-------------------------NYVGPPGGGGP 249
G + P+ +P S PG G G GP
Sbjct: 375 DEGIQGLRGPSGVPGLPALSGVPGALGPQGFPGLKGDQGNPGRTTIGAAGLPGRDGLPGP 434
Query: 250 PGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGMESHHMNGSL 309
PG P PSP T + N FP G GP G LG + G
Sbjct: 435 PGPPGPPSPEFETETLHN------------KESGFPGLRGEQGPKGNLG------LKGIK 476
Query: 310 GSGDMDSISKNSPNNMSLSNQPGTPRDDGEMG 341
G + PN + PG P G G
Sbjct: 477 GDSGFCACDGGVPN----TGPPGEPGPPGPWG 504
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 66.2 bits (160), Expect = 4e-11
Identities = 82/275 (29%), Positives = 99/275 (36%), Gaps = 41/275 (14%)
Query: 91 FHDYSAAAAPSPVLGNIPPGDGMPVGPV----PPGFFQPFMSPRYPG-----------GP 135
F + P+ VLG P G VGP+ PPG P PG GP
Sbjct: 906 FQGQTGPPGPAGVLG--PQGKTGEVGPLGERGPPGPPGPPGEQGLPGLEGREGAKGELGP 963
Query: 136 RPPLRIPNQA-LGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGG 194
PL A L G PG + P PT +G GP+ P PLGP GG
Sbjct: 964 PGPLGKEGPAGLRGFPGPKGG-PGDPGPTGLKGDKGPPGPVGANGSPGERGPLGPA--GG 1020
Query: 195 AMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTP- 253
P + GP P G G R P PT + IP P +GPPG GP G
Sbjct: 1021 IGLPGQSGSEGPVGPAGKKGSRGERGPPGPTGKDGIP----GPLGPLGPPGAAGPSGEEG 1076
Query: 254 ---IMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMG----PGSDGPMGGLGGMESHHMN 306
+ +P + GD +A PPG P G PG+DG G G
Sbjct: 1077 DKGDVGAPGHKGSKGDK----GDAGPPGQPGIRGPAGHPGPPGADGAQGRRGPPGLFGQK 1132
Query: 307 GSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMG 341
G G + L PG P + GE+G
Sbjct: 1133 GDDGVRGFVGVI----GPPGLQGLPGPPGEKGEVG 1163
Score = 61.6 bits (148), Expect = 1e-09
Identities = 80/284 (28%), Positives = 95/284 (33%), Gaps = 62/284 (21%)
Query: 95 SAAAAPSPVLGNIPPGDGMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQ- 153
S AA P G PPG+ G V P PG PP + G PG +
Sbjct: 1237 SGAAGPPGKKG--PPGEDGAKGSVGP--------TGLPGDLGPPGDPGVSGIDGSPGEKG 1286
Query: 154 -PLLPSGMDPTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMN 212
P G P G P GP + P M G + GA P GP P
Sbjct: 1287 DPGDVGGPGPPGASGEPGAPGPPGKRGPSGHMGREGREGEKGAKGEP-----GPDGPPGR 1341
Query: 213 MGPGGGRPWPN---PTNANSIPYSSASPG-----NYVGPPGGGGPPGTP----------- 253
GP G R P P IP PG +GPPG GP G P
Sbjct: 1342 TGPMGARGPPGRVGPEGLRGIPGPVGEPGLLGAPGQMGPPGPLGPSGLPGLKGDTGPKGE 1401
Query: 254 --------IMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMG-PGSDGPMGGLGGMESHH 304
++ P ++ GD PG P P G PG GP+G LG
Sbjct: 1402 KGHIGLIGLIGPPGEAGEKGDQGL-------PGVQGPPGPKGDPGPPGPIGSLGHPGPPG 1454
Query: 305 MNGSLGSGDMDSISKNSPNNM------SLSNQPGTPRDDGEMGG 342
+ G LG SK SP +M + PG P E+ G
Sbjct: 1455 VAGPLGQKG----SKGSPGSMGPRGDTGPAGPPGPPGAPAELHG 1494
Score = 59.3 bits (142), Expect = 5e-09
Identities = 79/269 (29%), Positives = 98/269 (36%), Gaps = 45/269 (16%)
Query: 107 IPPGDGMPVGPVPPGFFQPFMSPRY------PGGPRPPLRIPNQALGGVPGSQPLL-PSG 159
IP G+P PPGF P P + PG P + Q G PG +L P G
Sbjct: 864 IPGEKGLPGLQGPPGFPGPKGPPGHQGKDGRPGHPGQRGELGFQGQTGPPGPAGVLGPQG 923
Query: 160 ----MDPTRQQGHPNMGGPMQRMTPP--------RGMV----PLGPQNYGGAMRPPLNAL 203
+ P ++G P GP P +G + PLG + G P
Sbjct: 924 KTGEVGPLGERGPPGPPGPPGEQGLPGLEGREGAKGELGPPGPLGKEGPAGLRGFP-GPK 982
Query: 204 GGPGMPGMNMGPGGGRPWPNPTNANSIP--YSSASPGNYVGPPGGGGPPGTPIMPSPADS 261
GGPG PG G G + P P AN P P +G PG G G P+ P+
Sbjct: 983 GGPGDPGPT-GLKGDKGPPGPVGANGSPGERGPLGPAGGIGLPGQSGSEG-PVGPAGKKG 1040
Query: 262 TNSGDNMYTLMNAVPPGPN------RPNFPMG-PGSDGPMGGLGGMESHHMNGSLGS-GD 313
+ PPGP P P+G PG+ GP G G G GS GD
Sbjct: 1041 SRG--------ERGPPGPTGKDGIPGPLGPLGPPGAAGPSGEEGDKGDVGAPGHKGSKGD 1092
Query: 314 M-DSISKNSPNNMSLSNQPGTPRDDGEMG 341
D+ P + PG P DG G
Sbjct: 1093 KGDAGPPGQPGIRGPAGHPGPPGADGAQG 1121
Score = 57.4 bits (137), Expect = 2e-08
Identities = 67/236 (28%), Positives = 81/236 (34%), Gaps = 32/236 (13%)
Query: 111 DGMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPN 170
DG+P P G F + G P PP + G PG PT Q G P
Sbjct: 553 DGLPGLPGEKGQRGDF---GHVGQPGPPGEDGERGAEGPPG----------PTGQAGEPG 599
Query: 171 MGGPMQRMTPPRGMVPLGPQNYGGAM-RPPLNAL-GGPGMPGMNMGPGGGRPWPNPTNAN 228
PRG+ LGP+ G RP + + G PG G N+GP G P P N
Sbjct: 600 ----------PRGL--LGPRGSPGPTGRPGVTGIDGAPGAKG-NVGPPG-EPGPPGQQGN 645
Query: 229 SIPYSSASPGNYVGPPGGGGPPGTPIMPS-PADSTNSGDNMYTLMNAVPPGPNRPNFPMG 287
P +G PG GPPG P +P P G + P
Sbjct: 646 HGSQGLPGPQGLIGTPGEKGPPGNPGIPGLPGSDGPLGHPGHEGPTGEKGAQGPPGSAGP 705
Query: 288 PGSDGPMGGLGGMESHHMNGSLGSGDMDSIS--KNSPNNMSLSNQPGTPRDDGEMG 341
PG GP G G + + G G D K +PG P GE G
Sbjct: 706 PGYPGPRGVKGTSGNRGLQGEKGEKGEDGFPGFKGDVGLKGDQGKPGAPGPRGEDG 761
Score = 50.1 bits (118), Expect = 3e-06
Identities = 76/269 (28%), Positives = 95/269 (35%), Gaps = 53/269 (19%)
Query: 110 GDGMPVGPVPPGFFQPFMSPRYPG-----GPR-PPLRIPNQALGGVPGSQPLL-PSGMD- 161
GD P G PG P P PG G R PP + GV G ++ P G+
Sbjct: 1094 GDAGPPGQ--PGIRGPAGHPGPPGADGAQGRRGPPGLFGQKGDDGVRGFVGVIGPPGLQG 1151
Query: 162 ---PTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGM--NMGPG 216
P ++G G + M P P GPQ G+ P GG G PG G
Sbjct: 1152 LPGPPGEKGEV---GDVGSMGPHGAPGPRGPQGPTGSEGTP-GLPGGVGQPGAVGEKGER 1207
Query: 217 GGRPWPNPTNANSIP--------YSSASPGNYVGPPGGGGPPGT-----PIMPS--PADS 261
G P P A IP + P GPPG GPPG + P+ P D
Sbjct: 1208 GDAGDPGPPGAPGIPGPKGDIGEKGDSGPSGAAGPPGKKGPPGEDGAKGSVGPTGLPGDL 1267
Query: 262 TNSGDNMYTLMNAVP---------PGPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSG 312
GD + ++ P GP P PG+ GP G G S HM G
Sbjct: 1268 GPPGDPGVSGIDGSPGEKGDPGDVGGPGPPGASGEPGAPGPPGKRG--PSGHMGREGREG 1325
Query: 313 DMDSISKNSPNNMSLSNQPGTPRDDGEMG 341
+ + + P+ G P G MG
Sbjct: 1326 EKGAKGEPGPD--------GPPGRTGPMG 1346
Score = 48.5 bits (114), Expect = 9e-06
Identities = 61/246 (24%), Positives = 78/246 (31%), Gaps = 61/246 (24%)
Query: 132 PGGPRPPLRIPNQALGGVPGSQPLL--PSGMDPTRQQGHPNMGGPMQRMTPPRGMVPLGP 189
PG P PP + N G+PG Q L+ P P G P + G + P P G
Sbjct: 634 PGEPGPPGQQGNHGSQGLPGPQGLIGTPGEKGPPGNPGIPGLPGSDGPLGHPGHEGPTGE 693
Query: 190 QNYGGAMRPPLNALGGPGMPGM--------NMGPGG------------------------ 217
+ GA PP +A G PG PG N G G
Sbjct: 694 K---GAQGPPGSA-GPPGYPGPRGVKGTSGNRGLQGEKGEKGEDGFPGFKGDVGLKGDQG 749
Query: 218 --GRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAV 275
G P P + P A GPPG G G +P +
Sbjct: 750 KPGAPGPRGEDGPEGPKGQAGQAGEEGPPGSAGEKGKLGVP-----------------GL 792
Query: 276 PPGPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPR 335
P P RP G GP+G +G +G G ++ + P + QPG
Sbjct: 793 PGYPGRPGPKGSIGFPGPLGPIG---EKGKSGKTGQPGLEG-ERGPPGSRGERGQPGATG 848
Query: 336 DDGEMG 341
G G
Sbjct: 849 QPGPKG 854
Score = 47.8 bits (112), Expect = 2e-05
Identities = 86/348 (24%), Positives = 108/348 (31%), Gaps = 97/348 (27%)
Query: 83 EHSSEAKAFHDYSAAAAPSPVLGNIPPG-------------------DGMPVGPVPPGFF 123
E ++ D+ AA PS I PG +G P P P G
Sbjct: 344 EEGDDSTMGPDFRAAEYPSRTQFQIFPGAGEKGAKGEPAVIEKGQQFEGPPGAPGPQGVV 403
Query: 124 QPF---MSPRYPGGPRPP---------------------LRIPNQALGGVPGSQPLL--- 156
P P +PG P PP + +P Q GG P+
Sbjct: 404 GPSGPPGPPGFPGDPGPPGPAGLPGIPGIDGIRGPPGTVIMMPFQFAGGSFKGPPVSFQQ 463
Query: 157 -------------------PSGM----DPTRQQGHPNMGGPMQRMTP--PRGMV-PLGPQ 190
P G+ P GHP + G P PRG+ P GP
Sbjct: 464 AQAQAVLQQTQLSMKGPPGPVGLTGRPGPVGLPGHPGLKGEEGAEGPQGPRGLQGPHGPP 523
Query: 191 NYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGNY-----VGPPG 245
G M P A G G+PG + GP G R + +P G++ GPPG
Sbjct: 524 GRVGKMGRP-GADGARGLPG-DTGPKGDRGF---DGLPGLPGEKGQRGDFGHVGQPGPPG 578
Query: 246 GGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGP-NRPNF------PMGPGSDGPMGGLG 298
G G P P L PGP RP P G+ GP G G
Sbjct: 579 EDGERGAEGPPGPTGQAGEPGPRGLLGPRGSPGPTGRPGVTGIDGAPGAKGNVGPPGEPG 638
Query: 299 GMESHHMNGSLGSGDMDSI-----SKNSPNNMSLSNQPGTPRDDGEMG 341
+GS G + K P N + PG P DG +G
Sbjct: 639 PPGQQGNHGSQGLPGPQGLIGTPGEKGPPGNPGI---PGLPGSDGPLG 683
Score = 47.0 bits (110), Expect = 3e-05
Identities = 56/199 (28%), Positives = 71/199 (35%), Gaps = 39/199 (19%)
Query: 76 PERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPV-PPGFFQPFMSPRYPGG 134
P +R H + A P P + PPG P+G PPG P PG
Sbjct: 1309 PGKRGPSGHMGREGREGEKGAKGEPGP---DGPPGRTGPMGARGPPGRVGPEGLRGIPGP 1365
Query: 135 PRPPLRIPNQALGGVPGSQPLLPSGMD-------PTRQQGHPNMGGPMQRMTPPRGMVPL 187
P + G PG PL PSG+ P ++GH + G + PP
Sbjct: 1366 VGEPGLLGAPGQMGPPG--PLGPSGLPGLKGDTGPKGEKGHIGLIG---LIGPPGEAGEK 1420
Query: 188 GPQNYGGAMRPP-----------LNALGGPGMPGMN--MGPGGGRPWPNPTNANSIPYSS 234
G Q G PP + +LG PG PG+ +G G + P S
Sbjct: 1421 GDQGLPGVQGPPGPKGDPGPPGPIGSLGHPGPPGVAGPLGQKGSKGSPG----------S 1470
Query: 235 ASPGNYVGPPGGGGPPGTP 253
P GP G GPPG P
Sbjct: 1471 MGPRGDTGPAGPPGPPGAP 1489
Score = 46.6 bits (109), Expect = 3e-05
Identities = 72/250 (28%), Positives = 84/250 (33%), Gaps = 50/250 (20%)
Query: 129 PRYPGGPRPPLRIPNQA-LGGVPGSQ--------PLLPSGMDPTRQQGHPNMGGPMQRMT 179
PR GP P QA G PGS P LP G+P GP +
Sbjct: 756 PRGEDGPEGPKGQAGQAGEEGPPGSAGEKGKLGVPGLP---------GYPGRPGPKGSIG 806
Query: 180 PPRGMVPLGPQNYGGAMRPP--LNALGGPGMPGMNMGPGG-GRPWPN----PTNANSIPY 232
P + P+G + G P G PG G PG G+P P A IP
Sbjct: 807 FPGPLGPIGEKGKSGKTGQPGLEGERGPPGSRGERGQPGATGQPGPKGDVGQDGAPGIPG 866
Query: 233 SSASPGNYVGPPGGGGPPGTPIMPS----PADSTNSGDNMYTLMNAVPPGPNRPNFPMG- 287
PG GPPG GP G P P G+ + PPGP P G
Sbjct: 867 EKGLPG-LQGPPGFPGPKGPPGHQGKDGRPGHPGQRGELGFQGQTG-PPGPAGVLGPQGK 924
Query: 288 ------------PGSDGPMG--GLGGMESHHMNGSLGS-GDMDSISKNSPNNM-SLSNQP 331
PG GP G GL G+E G+ G G + K P +
Sbjct: 925 TGEVGPLGERGPPGPPGPPGEQGLPGLEGR--EGAKGELGPPGPLGKEGPAGLRGFPGPK 982
Query: 332 GTPRDDGEMG 341
G P D G G
Sbjct: 983 GGPGDPGPTG 992
Score = 42.0 bits (97), Expect = 9e-04
Identities = 54/193 (27%), Positives = 70/193 (36%), Gaps = 35/193 (18%)
Query: 112 GMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPG--SQPLL---PSGMDPTRQQ 166
G P PPG P G PP R+ + L G+PG +P L P M P
Sbjct: 1331 GEPGPDGPPGRTGPM------GARGPPGRVGPEGLRGIPGPVGEPGLLGAPGQMGPPGPL 1384
Query: 167 GHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNA--LGGPGMPGMNMGPGGGRPWPNP 224
G + G ++ T P+G G G + PP A G G+PG+ PG
Sbjct: 1385 GPSGLPG-LKGDTGPKG--EKGHIGLIGLIGPPGEAGEKGDQGLPGVQGPPG-------- 1433
Query: 225 TNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNF 284
P P +G G GPPG S S +M + P GP P
Sbjct: 1434 ------PKGDPGPPGPIGSLGHPGPPGVAGPLGQKGSKGSPGSMGPRGDTGPAGPPGP-- 1485
Query: 285 PMGPGSDGPMGGL 297
PG+ + GL
Sbjct: 1486 ---PGAPAELHGL 1495
>gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo
sapiens]
Length = 1690
Score = 66.2 bits (160), Expect = 4e-11
Identities = 76/244 (31%), Positives = 92/244 (37%), Gaps = 22/244 (9%)
Query: 109 PGDGMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQ-PLLPSGMDPTRQQG 167
P G P P PPG + P G Q G PG PL PSG P ++G
Sbjct: 488 PNTGPPGEPGPPGPWGLIGLPGLKGARGDRGSGGAQGPAGAPGLVGPLGPSG--PKGKKG 545
Query: 168 HPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPG-GGRPWPNPTN 226
P + +Q M RG G Q + G + P G PG+PG+ PG GG+ +P
Sbjct: 546 EPILS-TIQGMPGDRG--DSGSQGFRGVIGEP-GKDGVPGLPGLPGLPGDGGQGFPGEKG 601
Query: 227 ANSIPYSSASPGNYVGPPGGGGP--PGTPIMPS-------PADSTNSGDNMYTLMNAVPP 277
+P PG G PG G P PG +P P G TL +P
Sbjct: 602 LPGLPGEKGHPGP-PGLPGNGLPGLPGPRGLPGDKGKDGLPGQQGLPGSKGITLPCIIPG 660
Query: 278 GPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDD 337
FP PG GP G G + GS GS SP + L PG P
Sbjct: 661 SYGPSGFPGTPGFPGPKGSRGLPGTPGQPGSSGSKG----EPGSPGLVHLPELPGFPGPR 716
Query: 338 GEMG 341
GE G
Sbjct: 717 GEKG 720
Score = 56.6 bits (135), Expect = 3e-08
Identities = 84/314 (26%), Positives = 108/314 (34%), Gaps = 79/314 (25%)
Query: 100 PSPVLGNIPPGDGMPVGPVPPGFFQPFMSPRYPGGPR----------PPLRIPNQALGGV 149
P P + +P G+P G+ P + PG P P L+ P L G
Sbjct: 1188 PGPSITGVPGPAGLPGPKGEKGY--PGIGIGAPGKPGLRGQKGDRGFPGLQGP-AGLPGA 1244
Query: 150 PG-SQPLLPSGM--DPTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNALGGP 206
PG S P L +G DP G P + G R P P GP + G G P
Sbjct: 1245 PGISLPSLIAGQPGDP----GRPGLDGERGRPGPAGPPGPPGPSSNQGDT-------GDP 1293
Query: 207 GMPGMNMGPGGGRPWPNPTNANSIPYSSASPGN-----------YVGPPGGGGPPGTPIM 255
G PG+ GP G P IP S PG ++G PG GPPG P
Sbjct: 1294 GFPGIP-GPKG------PKGDQGIPGFSGLPGELGLKGMRGEPGFMGTPGKVGPPGDPGF 1346
Query: 256 P------SPADST----NSGDNMYTLMNAVPPGP-------NRPNFPMGPGSDGPMG--- 295
P P S+ + G VPPGP P PG+ GP+G
Sbjct: 1347 PGMKGKAGPRGSSGLQGDPGQTPTAEAVQVPPGPLGLPGIDGIPGLTGDPGAQGPVGLQG 1406
Query: 296 --GLGGMESHH-------MNGSLGSGDMDSIS-----KNSPNNMSLSNQPGTPRDDGEMG 341
GL G+ G+LG + + + +P PG P +G
Sbjct: 1407 SKGLPGIPGKDGPSGLPGPPGALGDPGLPGLQGPPGFEGAPGQQGPFGMPGMPGQSMRVG 1466
Query: 342 GNFLNPFQSESYSP 355
+ QSE P
Sbjct: 1467 YTLVKHSQSEQVPP 1480
Score = 52.8 bits (125), Expect = 5e-07
Identities = 71/266 (26%), Positives = 87/266 (32%), Gaps = 53/266 (19%)
Query: 108 PPGDGMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALG--GVPGSQPLLPSGMDPTRQ 165
P DG P PPG P G P+ P G G PG LP T
Sbjct: 135 PGPDGYPGLLGPPGL------PGQKGSKGDPVLAPGSFKGMKGDPG----LPGLDGITGP 184
Query: 166 QGHPNM------GGPMQRMTPPRGMVPLGPQ-NYGGAMRPPLNALGGPGMPGMNMGPGGG 218
QG P GP PP PLGP N G + G G+PG P G
Sbjct: 185 QGAPGFPGAVGPAGPPGLQGPPGPPGPLGPDGNMGLGFQGEKGVKGDVGLPG----PAGP 240
Query: 219 RPWPNPTNANSIPYSSASPGNYVGP---PGGGGPPGTPIMPSPADSTNSGDNMYTLMNAV 275
P P GP PG GPPG P + + + G+
Sbjct: 241 PPSTGELEFMGFPKGKKGSKGEPGPKGFPGISGPPGFPGLGTTGEKGEKGEKGI------ 294
Query: 276 PPGPNRPNFPMG-------PGSDGPMGGLG--------GMESHHMNGSLGSGDM-----D 315
PG P PMG PG G G LG G+E + L D+
Sbjct: 295 -PGLPGPRGPMGSEGVQGPPGQQGKKGTLGFPGLNGFQGIEGQKGDIGLPGPDVFIDIDG 353
Query: 316 SISKNSPNNMSLSNQPGTPRDDGEMG 341
++ +P + + PG D+G G
Sbjct: 354 AVISGNPGDPGVPGLPGLKGDEGIQG 379
Score = 51.2 bits (121), Expect = 1e-06
Identities = 68/240 (28%), Positives = 85/240 (35%), Gaps = 14/240 (5%)
Query: 107 IPPGDGMPVG-PVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPG--SQPLLPSGMDPT 163
I PG P G P PGF P S PG P P ++ G PG P LP P
Sbjct: 657 IIPGSYGPSGFPGTPGFPGPKGSRGLPGTPGQPGSSGSKGEPGSPGLVHLPELPGFPGPR 716
Query: 164 RQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNA-LGGPGMPGMNMGPGGGRPWP 222
++G P G + P + G GA A G PG G+ G G + +
Sbjct: 717 GEKGLPGFPGLPGKDGLPGMIGSPGLPGSKGATGDIFGAENGAPGEQGL-QGLTGHKGFL 775
Query: 223 NPTNANSIPYSSASPGNYVGPPGGGGPPGTP-IMPSPADSTNSGDNMYTLMNAVPPGPNR 281
+ + PG +GP G G PGTP + P +SG + +P P
Sbjct: 776 GDSGLPGLKGVHGKPG-LLGPKGERGSPGTPGQVGQPGTPGSSGPYGIKGKSGLPGAPGF 834
Query: 282 PNFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMG 341
P PG G G G S G G K P N L G+P G G
Sbjct: 835 PGISGHPGKKGTRGKKGPPGSIVKKGLPG-------LKGLPGNPGLVGLKGSPGSPGVAG 887
Score = 48.9 bits (115), Expect = 7e-06
Identities = 67/254 (26%), Positives = 92/254 (36%), Gaps = 52/254 (20%)
Query: 131 YPGGPRPPLRIPNQALGGVPGSQPLL-PSGMDPTR-QQGHPNMGGPMQRMTPPRGMVPLG 188
+PG P P + L G+PGS + PSG T ++G GP+ +P R M L
Sbjct: 906 FPGIPGLPGIPGTRGLKGIPGSTGKMGPSGRAGTPGEKGDRGNPGPVGIPSPRRPMSNLW 965
Query: 189 PQNYGGAMRPPLNALGGPGMPGMNMGPG-GGRPWPNPTNANSIPYSSASPGNYVGPPGGG 247
+ G+ + G G PG G GRP P +P + PG G G
Sbjct: 966 LKGDKGSQ----GSAGSNGFPGPRGDKGEAGRPGPP-----GLPGAPGLPGIIKGVSGKP 1016
Query: 248 GPP------------------GTPIMPSPADSTN----------------SGDNMYTLMN 273
GPP G P MP + S GDN T+
Sbjct: 1017 GPPGFMGIRGLPGLKGSSGITGFPGMPGESGSQGIRGSPGLPGASGLPGLKGDNGQTVEI 1076
Query: 274 AVPPG----PNRPNFPMGPGSDGPMGGLGGMESHHMNGSLG-SGDMD-SISKNSPNNMSL 327
+ PG P F G DG +G +G + +G +G SGD+ + P +
Sbjct: 1077 SGSPGPKGQPGESGFKGTKGRDGLIGNIGFPGNKGEDGKVGVSGDVGLPGAPGFPGVAGM 1136
Query: 328 SNQPGTPRDDGEMG 341
+PG P G G
Sbjct: 1137 RGEPGLPGSSGHQG 1150
Score = 43.9 bits (102), Expect = 2e-04
Identities = 61/221 (27%), Positives = 83/221 (37%), Gaps = 38/221 (17%)
Query: 142 PNQALGGVPGSQPLLPSGMD-PTRQQGHPNMGGPMQRMTPPRG----MVPLGPQNYGGAM 196
P + G PG P G+ PT QG G + + RG + P GP+ G M
Sbjct: 43 PEKGARGRPG-----PIGIQGPTGPQGFTGSTG-LSGLKGERGFPGLLGPYGPKGDKGPM 96
Query: 197 RPP----LNALGG-PGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGNYVGPPG---GGG 248
P +N + G PG PG GP G A P PG +GPPG G
Sbjct: 97 GVPGFLGINGIPGHPGQPGPR-GPPGLDGCNGTQGAVGFPGPDGYPG-LLGPPGLPGQKG 154
Query: 249 PPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFP--MGP-------GSDGPMGGLGG 299
G P++ + GD ++ + P FP +GP G GP G LG
Sbjct: 155 SKGDPVLAPGSFKGMKGDPGLPGLDGITGPQGAPGFPGAVGPAGPPGLQGPPGPPGPLG- 213
Query: 300 MESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEM 340
+G++G G K ++ L G P GE+
Sbjct: 214 -----PDGNMGLGFQG--EKGVKGDVGLPGPAGPPPSTGEL 247
Score = 42.7 bits (99), Expect = 5e-04
Identities = 46/176 (26%), Positives = 58/176 (32%), Gaps = 44/176 (25%)
Query: 120 PGFFQPFMSPRYPG-----GPRPPLRIPNQALGGVPGSQPLLPSGMDPTRQQGHPNMGGP 174
PG P P +PG GPR + L G PG P + P G P + G
Sbjct: 1335 PGKVGPPGDPGFPGMKGKAGPRG-----SSGLQGDPGQTPTAEAVQVPPGPLGLPGIDGI 1389
Query: 175 MQRMTPPRGMVPLGPQNYGG-----------AMRPPLNALGGPGMPGMNMGPGGGRPWPN 223
P P+G Q G + P ALG PG+PG+ PG
Sbjct: 1390 PGLTGDPGAQGPVGLQGSKGLPGIPGKDGPSGLPGPPGALGDPGLPGLQGPPG------- 1442
Query: 224 PTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGP 279
+ G PG GP G P MP + ++ VPP P
Sbjct: 1443 ----------------FEGAPGQQGPFGMPGMPGQSMRVGYTLVKHSQSEQVPPCP 1482
Score = 40.0 bits (92), Expect = 0.003
Identities = 69/272 (25%), Positives = 90/272 (33%), Gaps = 69/272 (25%)
Query: 108 PPGDGMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQ-PLLPSGMD-PTRQ 165
P G P PPGF P + G + IP G+PG + P+ G+ P Q
Sbjct: 263 PGPKGFPGISGPPGF--PGLGTTGEKGEKGEKGIP-----GLPGPRGPMGSEGVQGPPGQ 315
Query: 166 QGH------PNMGGPMQRMTPPRGMVPL-GPQNY----GGAMRPPLNALGGPGMPGMNMG 214
QG P + G Q + +G + L GP + G + G PG+PG+ G
Sbjct: 316 QGKKGTLGFPGLNG-FQGIEGQKGDIGLPGPDVFIDIDGAVISGNPGDPGVPGLPGLK-G 373
Query: 215 PGGGRPWPNPTNANSIPYSSASPG-------------------------NYVGPPGGGGP 249
G + P+ +P S PG G G GP
Sbjct: 374 DEGIQGLRGPSGVPGLPALSGVPGALGPQGFPGLKGDQGNPGRTTIGAAGLPGRDGLPGP 433
Query: 250 PGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGMESHHMNGSL 309
PG P PSP T + N FP G GP G LG + G
Sbjct: 434 PGPPGPPSPEFETETLHN------------KESGFPGLRGEQGPKGNLG------LKGIK 475
Query: 310 GSGDMDSISKNSPNNMSLSNQPGTPRDDGEMG 341
G + PN + PG P G G
Sbjct: 476 GDSGFCACDGGVPN----TGPPGEPGPPGPWG 503
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.136 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,320,388
Number of Sequences: 37866
Number of extensions: 1750024
Number of successful extensions: 13472
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 977
Number of HSP's that attempted gapping in prelim test: 5893
Number of HSP's gapped (non-prelim): 3556
length of query: 361
length of database: 18,247,518
effective HSP length: 104
effective length of query: 257
effective length of database: 14,309,454
effective search space: 3677529678
effective search space used: 3677529678
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.