Guide to the Human Genome
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Name: FLJ40504 Sequence: fasta or formatted (259aa) NCBI GI: 27734744
Description:

hypothetical protein LOC284085

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         17           1
 C cysteine            2.7          7           1
 D aspartate           5.4         14           2
 E glutamate           6.6         17           3
 F phenylalanine       2.3          6           1
 G glycine             6.9         18           2
 H histidine           5.4         14           2
 I isoleucine          4.2         11           1
 K lysine              6.2         16           2
 L leucine            13.1         34           2
 M methionine          3.1          8           1
 N asparagine          3.5          9           1
 P proline             4.2         11           1
 Q glutamine           5.4         14           1
 R arginine            3.1          8           1
 S serine              8.9         23           2
 T threonine           3.9         10           1
 V valine              5.8         15           1
 W tryptophan          1.5          4           1
 Y tyrosine            1.2          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC284085 
KRT18                 0.541   keratin 18 
KRT18                 0.541   keratin 18 
KRT10                 0.265   keratin 10 
KRT19                 0.257   keratin 19 
KRT14                 0.257   keratin 14 
KRT16                 0.253   keratin 16 
KRT24                 0.251   keratin 24 
KRT15                 0.246   keratin 15 
KRT17                 0.244   keratin 17 
KRT35                 0.242   keratin 35 
KRT36                 0.240   keratin 36 
KRT13                 0.236   keratin 13 isoform b 
KRT13                 0.236   keratin 13 isoform a 
KRT28                 0.230   keratin 25D 
KRT27                 0.230   keratin 27 
KRT12                 0.228   keratin 12 
KRT32                 0.226   keratin 32 
KRT20                 0.226   keratin 20 
KRT33A                0.220   keratin 33A 
KRT25                 0.214   keratin 25 
KRT31                 0.214   keratin 31 
KRT40                 0.208   type I hair keratin KA36 
KRT26                 0.206   keratin 26 
KRT33B                0.204   type I hair keratin 3B 
KRT34                 0.194   keratin 34 
KRT39                 0.190   type I hair keratin KA35 
KRT9                  0.184   keratin 9 
KRT38                 0.182   keratin 38 
KRT37                 0.182   keratin 37 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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