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Search of human proteins with 38679892
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|38679892 protein (peptidyl-prolyl cis/trans isomerase)
NIMA-interacting, 4 (parvulin) [Homo sapiens]
(156 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|38679892 protein (peptidyl-prolyl cis/trans isomerase) NIMA-i... 316 4e-87
gi|5453898 protein (peptidyl-prolyl cis/trans isomerase) NIMA-in... 54 5e-08
gi|154355000 KH-type splicing regulatory protein [Homo sapiens] 32 0.29
gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma... 32 0.29
gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated ... 32 0.29
gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated... 32 0.29
gi|28416436 ADP-ribosylation factor GTPase activating protein 1 ... 31 0.37
gi|112380630 leiomodin 1 (smooth muscle) [Homo sapiens] 31 0.37
gi|24586686 voltage-dependent calcium channel gamma-8 subunit [H... 31 0.37
gi|89257348 homeo box HB9 [Homo sapiens] 31 0.49
gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens] 31 0.49
gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens] 31 0.49
gi|42558250 membrane component chromosome 11 surface marker 1 is... 31 0.49
gi|42734503 membrane component chromosome 11 surface marker 1 is... 31 0.49
gi|7242140 ClpX caseinolytic protease X homolog [Homo sapiens] 30 0.64
gi|9955937 acrosomal vesicle protein 1 isoform f precursor [Homo... 30 0.64
gi|197333809 joined to JAZF1 [Homo sapiens] 30 0.83
gi|18375673 regulator of nonsense transcripts 1 [Homo sapiens] 30 0.83
gi|15011916 nucleolar protein family A, member 1 [Homo sapiens] 30 0.83
gi|9506713 nucleolar protein family A, member 1 [Homo sapiens] 30 0.83
gi|22748877 basic helix-loop-helix domain containing, class B, 5... 30 0.83
gi|5031749 high-mobility group nucleosomal binding domain 2 [Hom... 30 0.83
gi|38787935 BMP-2 inducible kinase isoform a [Homo sapiens] 30 1.1
gi|38787904 BMP-2 inducible kinase isoform b [Homo sapiens] 30 1.1
gi|189491742 ataxin 7 isoform b [Homo sapiens] 30 1.1
gi|4506797 ataxin 7 isoform a [Homo sapiens] 30 1.1
gi|197313672 carnitine deficiency-associated gene expressed in v... 30 1.1
gi|8923710 carnitine deficiency-associated gene expressed in ven... 30 1.1
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 30 1.1
gi|194097354 G1 to S phase transition 1 isoform 2 [Homo sapiens] 30 1.1
>gi|38679892 protein (peptidyl-prolyl cis/trans isomerase)
NIMA-interacting, 4 (parvulin) [Homo sapiens]
Length = 156
Score = 316 bits (810), Expect = 4e-87
Identities = 156/156 (100%), Positives = 156/156 (100%)
Query: 1 MPMAGLLKGLVRQLERFSVQQQASKMPPKGKSGSGKAGKGGAASGSDSADKKAQGPKGGG 60
MPMAGLLKGLVRQLERFSVQQQASKMPPKGKSGSGKAGKGGAASGSDSADKKAQGPKGGG
Sbjct: 1 MPMAGLLKGLVRQLERFSVQQQASKMPPKGKSGSGKAGKGGAASGSDSADKKAQGPKGGG 60
Query: 61 NAVKVRHILCEKHGKIMEAMEKLKSGMRFNEVAAQYSEDKARQGGDLGWMTRGSMVGPFQ 120
NAVKVRHILCEKHGKIMEAMEKLKSGMRFNEVAAQYSEDKARQGGDLGWMTRGSMVGPFQ
Sbjct: 61 NAVKVRHILCEKHGKIMEAMEKLKSGMRFNEVAAQYSEDKARQGGDLGWMTRGSMVGPFQ 120
Query: 121 EAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 156
EAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK
Sbjct: 121 EAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 156
>gi|5453898 protein (peptidyl-prolyl cis/trans isomerase)
NIMA-interacting 1 [Homo sapiens]
Length = 163
Score = 53.9 bits (128), Expect = 5e-08
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 8/74 (10%)
Query: 80 MEKLKSGMR-FNEVAAQYSE-DKARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDKPVFT 137
++K+KSG F +A+Q+S+ A+ GDLG +RG M PF++A+FAL M PVFT
Sbjct: 93 IQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFT 152
Query: 138 DPPVKTKFGYHIIM 151
D G HII+
Sbjct: 153 DS------GIHIIL 160
>gi|154355000 KH-type splicing regulatory protein [Homo sapiens]
Length = 711
Score = 31.6 bits (70), Expect = 0.29
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 27 PPKGKSGSGK---AGKGGAASGSDSADKKAQGPKGGGNAVK 64
PP G G+G G GG G SA +Q P GGG ++
Sbjct: 30 PPPGPPGAGDRGGGGPGGGGPGGGSAGGPSQPPGGGGPGIR 70
Score = 27.3 bits (59), Expect = 5.4
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 27 PPKGKSGSGKAGKGGAASGSDSADKKAQGPKGGG 60
P G G+G AG G + D+ GP GGG
Sbjct: 16 PAGGGGGAGGAGGGPPPGPPGAGDRGGGGPGGGG 49
>gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma)
[Homo sapiens]
Length = 526
Score = 31.6 bits (70), Expect = 0.29
Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 9/52 (17%)
Query: 18 SVQQQASKMPPKG---------KSGSGKAGKGGAASGSDSADKKAQGPKGGG 60
S QQ S PP+G SG G G GG G D + + G GGG
Sbjct: 142 SYGQQQSYNPPQGYGQQNQYNSSSGGGGGGGGGGNYGQDQSSMSSGGGSGGG 193
>gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated
with lethal yellow) long isoform [Homo sapiens]
Length = 306
Score = 31.6 bits (70), Expect = 0.29
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 7 LKGLVRQLERFSVQQQASKMPPKGKSGSGKAGKGGAASGSDSADKKAQGPKGGGNA 62
+ L+ +LE+ + +Q+A+ P GK G GG G S + G GGG++
Sbjct: 201 IDALLSRLEQIAAEQKAN---PDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSS 253
>gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated
with lethal yellow) short isoform [Homo sapiens]
Length = 290
Score = 31.6 bits (70), Expect = 0.29
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 7 LKGLVRQLERFSVQQQASKMPPKGKSGSGKAGKGGAASGSDSADKKAQGPKGGGNA 62
+ L+ +LE+ + +Q+A+ P GK G GG G S + G GGG++
Sbjct: 185 IDALLSRLEQIAAEQKAN---PDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSS 237
>gi|28416436 ADP-ribosylation factor GTPase activating protein 1
isoform b [Homo sapiens]
Length = 414
Score = 31.2 bits (69), Expect = 0.37
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 30 GKSGSGKAGKGGAASGSDSADKKAQGPKGGGN-AVKVRHILCEKHGKIMEAMEKLKSGMR 88
G S A K GA A +K G K A ++ H L E + A EK+K G
Sbjct: 217 GASRFASAAKEGATKFGSQASQKFWGHKQQPEPASELGHSLNEN--VLKPAQEKVKEGKI 274
Query: 89 FNEVAAQYSEDKARQGGDLGW 109
F++V++ S+ ++ G GW
Sbjct: 275 FDDVSSGVSQLASKGVGSKGW 295
>gi|112380630 leiomodin 1 (smooth muscle) [Homo sapiens]
Length = 600
Score = 31.2 bits (69), Expect = 0.37
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 21 QQASK--MPPKGKSGSGKAGKGGAASGSDSADKKAQGPKGGGNAVKVRHILCEKHGKIME 78
+ ASK + P+ S GK K G S S D+ G K G + + I G++
Sbjct: 106 RDASKKALGPRRDSDLGKEPKRGGLKKSFSRDRDEAGGKSGEKPKEEKIIRGIDKGRVRA 165
Query: 79 AMEKLKSGM--RFNEVAAQYSEDKARQGGD 106
A++K ++G R E A +++ ++G D
Sbjct: 166 AVDKKEAGKDGRGEERAVATKKEEEKKGSD 195
>gi|24586686 voltage-dependent calcium channel gamma-8 subunit [Homo
sapiens]
Length = 425
Score = 31.2 bits (69), Expect = 0.37
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 24 SKMPPKGKSGSGKAGKGGAASGSDSADKKAQGPKGGG 60
S+ P KG +G AG GG G+ A A G GGG
Sbjct: 310 SRDPSKGSVAAGLAGAGGGGGGAVGAFGGAAGGAGGG 346
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 30.8 bits (68), Expect = 0.49
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 20 QQQASKMPPKGKSGSGKAGKGGA--ASGSDSADKKAQGPKGGGNAVK 64
++QA++ K K G G AGKGGA + A G KG G ++
Sbjct: 303 KEQAAQEAEKQKGGGGGAGKGGAEEPGAEELLGPPAPGDKGSGRRLR 349
>gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens]
Length = 654
Score = 30.8 bits (68), Expect = 0.49
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 28 PKGKSG-SGKAG-KGGAASGSDSADKKAQGPKG--GGNAVKVRHILCEKHGKIMEAMEKL 83
PKGK G SG G KG + D AQGP+G G + + + +G + EA++++
Sbjct: 383 PKGKQGESGTRGPKGSKGDRGEKGDSGAQGPRGPPGQKGDQGATEIIDYNGNLHEALQRI 442
>gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens]
Length = 642
Score = 30.8 bits (68), Expect = 0.49
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 28 PKGKSG-SGKAG-KGGAASGSDSADKKAQGPKG--GGNAVKVRHILCEKHGKIMEAMEKL 83
PKGK G SG G KG + D AQGP+G G + + + +G + EA++++
Sbjct: 383 PKGKQGESGTRGPKGSKGDRGEKGDSGAQGPRGPPGQKGDQGATEIIDYNGNLHEALQRI 442
>gi|42558250 membrane component chromosome 11 surface marker 1
isoform 1 [Homo sapiens]
Length = 709
Score = 30.8 bits (68), Expect = 0.49
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 19/78 (24%)
Query: 27 PPKGKSGSGKAGKGGAASGSDSADKKAQGPKGGGNAVKVRHI-------------LCEKH 73
PP G SGS AA+G+ +A +Q P G AV+ + L +K
Sbjct: 19 PPSGSSGS------EAAAGAGAAAPASQHPATGTGAVQTEAMKQILGVIDKKLRNLEKKK 72
Query: 74 GKIMEAMEKLKSGMRFNE 91
GK+ + E++ G R N+
Sbjct: 73 GKLDDYQERMNKGERLNQ 90
>gi|42734503 membrane component chromosome 11 surface marker 1
isoform 2 [Homo sapiens]
Length = 694
Score = 30.8 bits (68), Expect = 0.49
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 19/78 (24%)
Query: 27 PPKGKSGSGKAGKGGAASGSDSADKKAQGPKGGGNAVKVRHI-------------LCEKH 73
PP G SGS AA+G+ +A +Q P G AV+ + L +K
Sbjct: 19 PPSGSSGS------EAAAGAGAAAPASQHPATGTGAVQTEAMKQILGVIDKKLRNLEKKK 72
Query: 74 GKIMEAMEKLKSGMRFNE 91
GK+ + E++ G R N+
Sbjct: 73 GKLDDYQERMNKGERLNQ 90
>gi|7242140 ClpX caseinolytic protease X homolog [Homo sapiens]
Length = 633
Score = 30.4 bits (67), Expect = 0.64
Identities = 29/117 (24%), Positives = 44/117 (37%), Gaps = 13/117 (11%)
Query: 31 KSGSGKAGKGGAASGSDSADKKAQGPKGGGNAVKVRHILCEKHGKIMEAMEKLKSGMRFN 90
K GSG K A+ GS KGG + C K G + +E S RF
Sbjct: 72 KDGSGDGNKKSASEGSSKKSGSGNSGKGG------NQLRCPKCGDLCTHVETFVSSTRFV 125
Query: 91 EVAAQYSEDKARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFGY 147
+ + D ++ S++ + AA A+ ++ KP PP K + Y
Sbjct: 126 KCEKCHHFFVVLSEAD----SKKSIIKEPESAAEAVKLAFQQKP---PPPPKKIYNY 175
>gi|9955937 acrosomal vesicle protein 1 isoform f precursor [Homo
sapiens]
Length = 170
Score = 30.4 bits (67), Expect = 0.64
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 18 SVQQQASKMP----PKGKSGSGKAGKGGAASGSDSADKKAQGPKGGG 60
SVQQ + P P G+ GSG+ G ASG + + A G + G
Sbjct: 35 SVQQLPGEQPSDEQPSGEHGSGEQPSGEQASGEQPSGEHASGEQASG 81
>gi|197333809 joined to JAZF1 [Homo sapiens]
Length = 739
Score = 30.0 bits (66), Expect = 0.83
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 11/66 (16%)
Query: 30 GKSGSGKAGKGGAASGSDSADKKAQGPKGGGNAV------KVRHILCEKHGKIMEAMEKL 83
GKSG G G GG+ S S S+ A G AV K+ H+ + H ++A EK
Sbjct: 39 GKSGGGSCGGGGSYSASSSSSAAA----AAGAAVLPVKKPKMEHVQAD-HELFLQAFEKP 93
Query: 84 KSGMRF 89
RF
Sbjct: 94 TQIYRF 99
Score = 26.6 bits (57), Expect = 9.2
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 27 PPKGKSGSGKAGKGGAASGSDSADKKAQGPKGGGNA 62
P G G G G A+ + S K G GGG +
Sbjct: 16 PSAGSGGGGFGGSAAVAAATASGGKSGGGSCGGGGS 51
>gi|18375673 regulator of nonsense transcripts 1 [Homo sapiens]
Length = 1118
Score = 30.0 bits (66), Expect = 0.83
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 17 FSVQQQASKMP--PKGKSGSGKAGKGGAASGSDSADKKAQ-GPKG 58
F++ Q P P G G G G GGA +G+ + AQ GP+G
Sbjct: 38 FTLPSQTQTPPGGPGGPGGGGAGGPGGAGAGAAAGQLDAQVGPEG 82
>gi|15011916 nucleolar protein family A, member 1 [Homo sapiens]
Length = 217
Score = 30.0 bits (66), Expect = 0.83
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 14 LERFSVQQQASKMPPKGKSGSGKAGKGGAASGSDSADKKAQGPKGG 59
L+RF + K PP+G G+ G+GG G + G +GG
Sbjct: 154 LQRFLPRPPGEKGPPRG---GGRGGRGGGRGGGGRGGGRGGGFRGG 196
>gi|9506713 nucleolar protein family A, member 1 [Homo sapiens]
Length = 217
Score = 30.0 bits (66), Expect = 0.83
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 14 LERFSVQQQASKMPPKGKSGSGKAGKGGAASGSDSADKKAQGPKGG 59
L+RF + K PP+G G+ G+GG G + G +GG
Sbjct: 154 LQRFLPRPPGEKGPPRG---GGRGGRGGGRGGGGRGGGRGGGFRGG 196
>gi|22748877 basic helix-loop-helix domain containing, class B, 5
[Homo sapiens]
Length = 381
Score = 30.0 bits (66), Expect = 0.83
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 26 MPPKGKSGSGKAGKGGAASGSDSADKKAQGPKGGG-----NAVKVRHILCEKHGK 75
+PP G G G AG GG G G G G +++ LC K+G+
Sbjct: 77 LPPPGGGGGGSAGSGGGGGGGVGVPGLLVGSAGVGGDPSLSSLPAGAALCLKYGE 131
>gi|5031749 high-mobility group nucleosomal binding domain 2 [Homo
sapiens]
Length = 90
Score = 30.0 bits (66), Expect = 0.83
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 28 PKGKSGSGKAGKGG--AASGSDSADKKAQGPKGGGNA 62
PKGK G AGK G A D+ +AQ +G G+A
Sbjct: 53 PKGKKGKADAGKEGNNPAENGDAKTDQAQKAEGAGDA 89
>gi|38787935 BMP-2 inducible kinase isoform a [Homo sapiens]
Length = 1161
Score = 29.6 bits (65), Expect = 1.1
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 28 PKGKSGSGKAGKGGAASGSDSADKKAQGPKGGGNAVKVRHILCEKHGKIMEAMEKLKSG 86
PK + GSG GG A G+ + G GG++V VR +H +E E L G
Sbjct: 8 PKSEGGSGGGAAGGGAGGAGA----GAGCGSGGSSVGVRVFAVGRHQVTLE--ESLAEG 60
>gi|38787904 BMP-2 inducible kinase isoform b [Homo sapiens]
Length = 662
Score = 29.6 bits (65), Expect = 1.1
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 28 PKGKSGSGKAGKGGAASGSDSADKKAQGPKGGGNAVKVRHILCEKHGKIMEAMEKLKSG 86
PK + GSG GG A G+ + G GG++V VR +H +E E L G
Sbjct: 8 PKSEGGSGGGAAGGGAGGAGA----GAGCGSGGSSVGVRVFAVGRHQVTLE--ESLAEG 60
>gi|189491742 ataxin 7 isoform b [Homo sapiens]
Length = 945
Score = 29.6 bits (65), Expect = 1.1
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 17 FSVQQQASKMPPKGKSGSGKAGKGGAASGSDSADKKAQGPKG----GGNAVKVRHILCEK 72
FS SK SGS ++ GG S S S+ K + PK GN + I +
Sbjct: 186 FSFFPSLSKSKGGSASGSNRSSSGGVLSASSSSSKLLKSPKEKLQLRGNTRPMHPIQQSR 245
Query: 73 --HGKIMEAMEKLK 84
HG+IM K++
Sbjct: 246 VPHGRIMTPSVKVE 259
>gi|4506797 ataxin 7 isoform a [Homo sapiens]
Length = 892
Score = 29.6 bits (65), Expect = 1.1
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 17 FSVQQQASKMPPKGKSGSGKAGKGGAASGSDSADKKAQGPKG----GGNAVKVRHILCEK 72
FS SK SGS ++ GG S S S+ K + PK GN + I +
Sbjct: 186 FSFFPSLSKSKGGSASGSNRSSSGGVLSASSSSSKLLKSPKEKLQLRGNTRPMHPIQQSR 245
Query: 73 --HGKIMEAMEKLK 84
HG+IM K++
Sbjct: 246 VPHGRIMTPSVKVE 259
>gi|197313672 carnitine deficiency-associated gene expressed in
ventricle 3 isoform a [Homo sapiens]
Length = 213
Score = 29.6 bits (65), Expect = 1.1
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 12 RQLERFSVQQQASKMPPKGKSGSGKAGKGGAASGSDSADKKAQGPKGGG 60
R L+ F ++ K + + AG G+A GS A A G G G
Sbjct: 7 RSLDNFFAKRDKKKKKERSNRAASAAGAAGSAGGSSGAAGAAGGGAGAG 55
Score = 29.6 bits (65), Expect = 1.1
Identities = 39/127 (30%), Positives = 55/127 (43%), Gaps = 22/127 (17%)
Query: 30 GKSGSGKAGKGGAASGSDSAD--KKAQGPKGGGNAVKVRHILCEKHGKIMEAMEKLKSGM 87
G SG+ A GGA +G+ D + G G G A K E K +E E SG+
Sbjct: 40 GSSGAAGAAGGGAGAGTRPGDGGTASAGAAGPGAATKA-VTKDEDEWKELEQKEVDYSGL 98
Query: 88 RFN--EVAAQYSED--KARQ---------GGDLGWMTRGSMVGPFQEAAFALPVSGMDKP 134
R +++++ ED + RQ GG G M + S GP+ + A PV P
Sbjct: 99 RVQAMQISSEKEEDDNEKRQDPGDNWEEGGGGGGGMEKSS--GPWNKTA---PVQAPPAP 153
Query: 135 VF-TDPP 140
V T+ P
Sbjct: 154 VIVTETP 160
>gi|8923710 carnitine deficiency-associated gene expressed in
ventricle 3 isoform b [Homo sapiens]
Length = 258
Score = 29.6 bits (65), Expect = 1.1
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 12 RQLERFSVQQQASKMPPKGKSGSGKAGKGGAASGSDSADKKAQGPKGGG 60
R L+ F ++ K + + AG G+A GS A A G G G
Sbjct: 7 RSLDNFFAKRDKKKKKERSNRAASAAGAAGSAGGSSGAAGAAGGGAGAG 55
Score = 29.6 bits (65), Expect = 1.1
Identities = 39/127 (30%), Positives = 55/127 (43%), Gaps = 22/127 (17%)
Query: 30 GKSGSGKAGKGGAASGSDSAD--KKAQGPKGGGNAVKVRHILCEKHGKIMEAMEKLKSGM 87
G SG+ A GGA +G+ D + G G G A K E K +E E SG+
Sbjct: 40 GSSGAAGAAGGGAGAGTRPGDGGTASAGAAGPGAATKA-VTKDEDEWKELEQKEVDYSGL 98
Query: 88 RFN--EVAAQYSED--KARQ---------GGDLGWMTRGSMVGPFQEAAFALPVSGMDKP 134
R +++++ ED + RQ GG G M + S GP+ + A PV P
Sbjct: 99 RVQAMQISSEKEEDDNEKRQDPGDNWEEGGGGGGGMEKSS--GPWNKTA---PVQAPPAP 153
Query: 135 VF-TDPP 140
V T+ P
Sbjct: 154 VIVTETP 160
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 29.6 bits (65), Expect = 1.1
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 30 GKSGSGKAGKGGAASGSDSADKKAQGPK---GGGNAVKVRHILCEKHGKIMEAMEKLKSG 86
G G+G G GGA G + D+ G GGG + +G ++ A
Sbjct: 1314 GGGGAGSLGAGGAF-GEAAGDRGPYGTDIGPGGGYGAAAEGGMYAGNGGLLGA--DFAGD 1370
Query: 87 MRFNEVAAQYSEDKARQG 104
+ +NE+A + SE RQG
Sbjct: 1371 LDYNELAVRVSESMQRQG 1388
>gi|194097354 G1 to S phase transition 1 isoform 2 [Homo sapiens]
Length = 636
Score = 29.6 bits (65), Expect = 1.1
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 12/50 (24%)
Query: 26 MPPKGKSGSGKAGKGGAASGSDSADK------------KAQGPKGGGNAV 63
M P G G G GG++SGS S+D GP GGG ++
Sbjct: 1 MDPGSGGGGGGGGGGGSSSGSSSSDSAPDCWDQADMEAPGPGPCGGGGSL 50
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.133 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,388,096
Number of Sequences: 37866
Number of extensions: 282356
Number of successful extensions: 2121
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 1797
Number of HSP's gapped (non-prelim): 351
length of query: 156
length of database: 18,247,518
effective HSP length: 94
effective length of query: 62
effective length of database: 14,688,114
effective search space: 910663068
effective search space used: 910663068
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.