CAPRIN1 28016

Name: CAPRIN1	Sequence: fasta or formatted (709aa)		NCBI GI: 42558250
Description: membrane component chromosome 11 surface marker 1 isoform 1		Referenced in: Complement
Other entries for this name: alt prot [694aa] membrane component chromosome 11 surface marker 1 isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.9 49 3 C cysteine 0.4 3 1 D aspartate 4.1 29 2 E glutamate 8.0 57 4 F phenylalanine 2.5 18 1 G glycine 6.9 49 2 H histidine 2.0 14 1 I isoleucine 1.8 13 1 K lysine 3.9 28 3 L leucine 6.5 46 2 M methionine 2.5 18 1 N asparagine 5.2 37 2 P proline 8.3 59 4 Q glutamine 11.3 80 3 R arginine 4.8 34 2 S serine 9.2 65 3 T threonine 5.6 40 2 V valine 6.2 44 2 W tryptophan 0.3 2 1 Y tyrosine 3.4 24 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 membrane component chromosome 11 surface marker 1 is... CAPRIN1 0.969 membrane component chromosome 11 surface marker 1 is... CAPRIN2 0.141 C1q domain containing 1 isoform 1 CAPRIN2 0.141 C1q domain containing 1 isoform 2 CAPRIN2 0.110 C1q domain containing 1 isoform 3 FUS 0.017 fusion (involved in t(12;16) in malignant liposarcoma... WNK1 0.016 WNK lysine deficient protein kinase 1 MLL3 0.016 myeloid/lymphoid or mixed-lineage leukemia 3 SS18 0.016 synovial sarcoma translocation, chromosome 18 isofor... BRD4 0.016 bromodomain-containing protein 4 isoform long MYH9 0.016 myosin, heavy polypeptide 9, non-muscle SS18 0.014 synovial sarcoma translocation, chromosome 18 isofor... PCLO 0.014 piccolo isoform 2 PCLO 0.014 piccolo isoform 1 RERE 0.014 atrophin-1 like protein isoform b RERE 0.014 atrophin-1 like protein isoform a RERE 0.014 atrophin-1 like protein isoform a ARID1B 0.014 AT rich interactive domain 1B (SWI1-like) isoform 1 ... ARID1B 0.014 AT rich interactive domain 1B (SWI1-like) isoform 3 ... ILF3 0.014 interleukin enhancer binding factor 3 isoform d [Ho... ILF3 0.014 interleukin enhancer binding factor 3 isoform a [Hom... YLPM1 0.014 YLP motif containing 1 TAF15 0.014 TBP-associated factor 15 isoform 2 TAF15 0.014 TBP-associated factor 15 isoform 1 CREBBP 0.013 CREB binding protein isoform b CREBBP 0.013 CREB binding protein isoform a ARID1A 0.013 AT rich interactive domain 1A isoform a ARID1A 0.013 AT rich interactive domain 1A isoform b RP1L1 0.013 retinitis pigmentosa 1-like 1 KTN1 0.013 kinectin 1 isoform a Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.