| Name: LMOD1 | Sequence: fasta or formatted (600aa) | NCBI GI: 112380630 | |
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Description: leiomodin 1 (smooth muscle)
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Referenced in: Cytoskeleton
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Composition:
Amino acid Percentage Count Longest homopolymer A alanine 7.0 42 2 C cysteine 0.5 3 1 D aspartate 6.5 39 2 E glutamate 11.0 66 3 F phenylalanine 1.7 10 1 G glycine 6.5 39 2 H histidine 1.0 6 1 I isoleucine 2.8 17 2 K lysine 13.8 83 2 L leucine 8.0 48 2 M methionine 2.7 16 1 N asparagine 5.2 31 2 P proline 6.5 39 7 Q glutamine 3.5 21 1 R arginine 6.8 41 2 S serine 5.5 33 2 T threonine 5.7 34 2 V valine 4.8 29 2 W tryptophan 0.0 0 0 Y tyrosine 0.5 3 1 |
Comparative genomics:
Search single species RefSeq proteins at NCBI
Search summary 
Figure data | ||
Related human proteins:Protein Relative score Description Self-match 1.000 leiomodin 1 (smooth muscle) LMOD2 0.233 leiomodin 2 (cardiac) LMOD3 0.217 leiomodin 3 (fetal) TMOD2 0.119 neuronal tropomodulin isoform a TMOD1 0.113 tropomodulin 1 TMOD3 0.112 tropomodulin 3 (ubiquitous) TMOD4 0.096 tropomodulin 4 (muscle) TMOD2 0.082 neuronal tropomodulin isoform b LOC100133599 0.050 PREDICTED: hypothetical protein LOC100133599 0.044 PREDICTED: hypothetical protein CYLC2 0.043 cylicin 2 RBM25 0.041 RNA binding motif protein 25 CYLC1 0.039 cylicin, basic protein of sperm head cytoskeleton 1... LOC100286959 0.039 PREDICTED: hypothetical protein XP_002343921 NEFH 0.039 neurofilament, heavy polypeptide 200kDa LOC100131202 0.038 PREDICTED: hypothetical protein SFRS12 0.035 splicing factor, arginine/serine-rich 12 isoform a ... SFRS12 0.035 splicing factor, arginine/serine-rich 12 isoform b [... NSBP1 0.035 nucleosomal binding protein 1 DDX46 0.034 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 EIF5B 0.034 eukaryotic translation initiation factor 5B RPGR 0.032 retinitis pigmentosa GTPase regulator isoform C [Hom... ZC3H13 0.032 zinc finger CCCH-type containing 13 CALD1 0.032 caldesmon 1 isoform 1 SFRS4 0.030 splicing factor, arginine/serine-rich 4 ANKRD12 0.029 ankyrin repeat domain 12 isoform 2 ANKRD12 0.029 ankyrin repeat domain 12 isoform 1 PPIG 0.029 peptidylprolyl isomerase G ZC3H4 0.029 zinc finger CCCH-type containing 4 PRPF38B 0.029 PRP38 pre-mRNA processing factor 38 (yeast) domain ...Human BLASTP results (used to prepare the table) | |||
Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.
See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.
