Guide to the Human Genome
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Name: MNX1 Sequence: fasta or formatted (401aa) NCBI GI: 89257348
Description:

homeo box HB9

Referenced in:

Homeobox and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            18.0         72          14
 C cysteine            1.0          4           1
 D aspartate           4.5         18           2
 E glutamate           5.0         20           2
 F phenylalanine       2.2          9           1
 G glycine            14.0         56           8
 H histidine           3.7         15           3
 I isoleucine          1.0          4           1
 K lysine              4.7         19           2
 L leucine             8.7         35           2
 M methionine          1.2          5           1
 N asparagine          1.5          6           1
 P proline             9.5         38           3
 Q glutamine           5.0         20           2
 R arginine            4.7         19           2
 S serine              8.2         33           2
 T threonine           2.7         11           1
 V valine              1.7          7           1
 W tryptophan          0.7          3           1
 Y tyrosine            1.7          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   homeo box HB9 
HOXA4                 0.111   homeobox A4 
NKX1-1                0.107   PREDICTED: HPX-153 homeobox 
NKX1-1                0.103   PREDICTED: NK1 homeobox 1 
HOXD9                 0.101   homeobox D9 
NKX6-1                0.097   NK6 transcription factor related, locus 1 
GBX1                  0.096   gastrulation brain homeo box 1 
PDX1                  0.095   pancreatic and duodenal homeobox 1 
HOXD1                 0.095   homeobox D1 
HOXB1                 0.095   homeobox B1 
EMX1                  0.092   empty spiracles homolog 1 
NKX1-1                0.090   PREDICTED: NK1 homeobox 1 
GSX1                  0.090   GS homeobox 1 
GSX2                  0.088   GS homeobox 2 
NKX1-2                0.086   NK1 homeobox 2 
HOXD3                 0.086   homeobox D3 
NKX1-2                0.086   PREDICTED: NK1 homeobox 2 
NKX1-2                0.086   PREDICTED: NK1 homeobox 2 
NKX1-2                0.086   PREDICTED: NK1 homeobox 2 
HOXC4                 0.086   homeobox C4 
HOXC4                 0.086   homeobox C4 
HOXA5                 0.084   homeobox A5 
TLX1                  0.083   T-cell leukemia homeobox 1 
HOXB7                 0.083   homeobox B7 
EN2                   0.083   engrailed homeobox 2 
HOXD8                 0.082   homeobox D8 
BSX                   0.082   brain specific homeobox 
HOXA3                 0.081   homeobox A3 isoform a 
HOXA3                 0.081   homeobox A3 isoform a 
HOXD4                 0.081   homeobox D4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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