Guide to the Human Genome
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Name: GSPT1 Sequence: fasta or formatted (636aa) NCBI GI: 194097354
Description:

G1 to S phase transition 1 isoform 2

Referenced in:

Translation Factors

Other entries for this name:
alt prot [637aa] G1 to S phase transition 1 isoform 1
alt prot [499aa] G1 to S phase transition 1 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         47           4
 C cysteine            2.2         14           1
 D aspartate           4.7         30           2
 E glutamate          10.1         64           5
 F phenylalanine       3.5         22           1
 G glycine            11.0         70          11
 H histidine           2.5         16           1
 I isoleucine          5.5         35           2
 K lysine              7.2         46           2
 L leucine             6.8         43           1
 M methionine          2.5         16           2
 N asparagine          4.1         26           2
 P proline             6.9         44           4
 Q glutamine           2.5         16           2
 R arginine            3.6         23           1
 S serine              6.8         43           4
 T threonine           4.1         26           1
 V valine              6.3         40           2
 W tryptophan          0.9          6           1
 Y tyrosine            1.4          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   G1 to S phase transition 1 isoform 2 
GSPT1                 0.996   G1 to S phase transition 1 isoform 1 
GSPT2                 0.844   peptide chain release factor 3 
GSPT1                 0.775   G1 to S phase transition 1 isoform 3 
HBS1L                 0.250   Hsp70 subfamily B suppressor 1-like protein isoform...
HBS1L                 0.250   Hsp70 subfamily B suppressor 1-like protein isoform 1...
EEF1A1                0.225   eukaryotic translation elongation factor 1 alpha 1 [H...
EEF1A2                0.221   eukaryotic translation elongation factor 1 alpha 2 [H...
LOC100293909          0.194   PREDICTED: similar to eukaryotic translation elonga...
TUFM                  0.072   Tu translation elongation factor, mitochondrial prec...
GTPBP1                0.039   GTP binding protein 1 
LOC729856             0.038   PREDICTED: similar to hCG1981735 
LOC729856             0.038   PREDICTED: similar to hCG1981735 
LOC729856             0.037   PREDICTED: similar to hCG1981735 
GTPBP2                0.033   GTP binding protein 2 
CHD1                  0.027   chromodomain helicase DNA binding protein 1 
LOC643563             0.026   PREDICTED: similar to EEF1A1 protein 
LOC643563             0.026   PREDICTED: similar to EEF1A1 protein 
LOC643563             0.026   PREDICTED: similar to EEF1A1 protein 
EEFSEC                0.025   eukaryotic elongation factor, selenocysteine-tRNA-sp...
GUF1                  0.023   GUF1 GTPase homolog 
MTIF2                 0.021   mitochondrial translational initiation factor 2 prec...
MTIF2                 0.021   mitochondrial translational initiation factor 2 prec...
GFM1                  0.021   G elongation factor, mitochondrial 1 
EIF2S3                0.020   eukaryotic translation initiation factor 2, subunit 3...
HOXD9                 0.019   homeobox D9 
CNOT3                 0.019   CCR4-NOT transcription complex, subunit 3 
SETD1A                0.017   SET domain containing 1A 
GSK3A                 0.017   glycogen synthase kinase 3 alpha 
EIF5B                 0.016   eukaryotic translation initiation factor 5B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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