UPF1 9856

Name: UPF1	Sequence: fasta or formatted (1118aa)		NCBI GI: 18375673
Description: regulator of nonsense transcripts 1		Referenced in: RNA Metabolism RNases and RNA Stability
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.2 80 3 C cysteine 2.1 23 2 D aspartate 5.1 57 2 E glutamate 5.6 63 2 F phenylalanine 3.3 37 2 G glycine 8.4 94 4 H histidine 2.0 22 1 I isoleucine 4.8 54 2 K lysine 5.5 61 2 L leucine 9.4 105 2 M methionine 2.1 23 1 N asparagine 3.8 42 2 P proline 6.2 69 3 Q glutamine 7.2 81 2 R arginine 4.5 50 2 S serine 7.2 80 2 T threonine 5.1 57 2 V valine 6.4 72 3 W tryptophan 0.9 10 1 Y tyrosine 3.4 38 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 regulator of nonsense transcripts 1 PRIC285 0.071 PPAR-alpha interacting complex protein 285 isoform ... PRIC285 0.071 PPAR-alpha interacting complex protein 285 isoform ... IGHMBP2 0.070 immunoglobulin mu binding protein 2 DNA2 0.067 DNA replication helicase 2 homolog SETX 0.067 senataxin MOV10 0.059 Mov10, Moloney leukemia virus 10, homolog MOV10 0.059 Mov10, Moloney leukemia virus 10, homolog MOV10L1 0.058 MOV10-like 1 ZNFX1 0.048 zinc finger, NFX1-type containing 1 HELZ 0.041 helicase with zinc finger domain AQR 0.031 aquarius POU4F1 0.009 POU domain, class 4, transcription factor 1 SHOX2 0.008 short stature homeobox 2 isoform a FZD8 0.008 frizzled 8 BOD1L 0.008 biorientation of chromosomes in cell division 1-like... ARID1B 0.007 AT rich interactive domain 1B (SWI1-like) isoform 2 ... ARID1B 0.007 AT rich interactive domain 1B (SWI1-like) isoform 1 ... ARID1B 0.007 AT rich interactive domain 1B (SWI1-like) isoform 3 ... KHSRP 0.007 KH-type splicing regulatory protein GATA6 0.007 GATA binding protein 6 TCF7L1 0.007 HMG-box transcription factor TCF-3 SOX1 0.007 SRY (sex determining region Y)-box 1 OTUD5 0.007 OTU domain containing 5 isoform a OTUD5 0.007 OTU domain containing 5 isoform b OTUD5 0.007 OTU domain containing 5 isoform b CADPS 0.007 Ca2+-dependent secretion activator isoform 2 CADPS 0.007 Ca2+-dependent secretion activator isoform 1 CADPS 0.007 Ca2+-dependent secretion activator isoform 3 YEATS2 0.007 YEATS domain containing 2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.