Guide to the Human Genome
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Name: CDV3 Sequence: fasta or formatted (213aa) NCBI GI: 197313672
Description:

carnitine deficiency-associated gene expressed in ventricle 3 isoform a

Not currently referenced in the text

Other entries for this name:
alt prot {110aa} carnitine deficiency-associated gene expressed in ventricle 3 iso...
alt prot {258aa} carnitine deficiency-associated gene expressed in ventricle 3 iso...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.6         29           2
 C cysteine            0.0          0           0
 D aspartate           5.2         11           2
 E glutamate           9.4         20           2
 F phenylalanine       1.4          3           2
 G glycine            14.1         30           7
 H histidine           0.5          1           1
 I isoleucine          1.4          3           1
 K lysine              8.0         17           5
 L leucine             2.8          6           1
 M methionine          1.9          4           1
 N asparagine          2.8          6           1
 P proline             7.5         16           2
 Q glutamine           3.8          8           1
 R arginine            5.6         12           1
 S serine              8.0         17           2
 T threonine           7.0         15           3
 V valine              3.8          8           1
 W tryptophan          1.4          3           1
 Y tyrosine            1.9          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   carnitine deficiency-associated gene expressed in v... 
CDV3                  0.973   carnitine deficiency-associated gene expressed in ven...
CDV3                  0.495   carnitine deficiency-associated gene expressed in v...
HECA                  0.066   headcase 
ZSWIM6                0.056   zinc finger, SWIM-type containing 6 
MAF                   0.054   v-maf musculoaponeurotic fibrosarcoma oncogene homol...
MAF                   0.054   v-maf musculoaponeurotic fibrosarcoma oncogene homolo...
AEBP2                 0.051   AE binding protein 2 isoform b 
AEBP2                 0.051   AE binding protein 2 isoform a 
HNRNPD                0.051   heterogeneous nuclear ribonucleoprotein D isoform b ...
HNRNPD                0.051   heterogeneous nuclear ribonucleoprotein D isoform d ...
COL1A2                0.049   alpha 2 type I collagen 
ZIC2                  0.049   zinc finger protein of the cerebellum 2 
POU3F3                0.049   POU class 3 homeobox 3 
TWIST1                0.049   twist 
HNRNPD                0.049   heterogeneous nuclear ribonucleoprotein D isoform a ...
HNRNPD                0.049   heterogeneous nuclear ribonucleoprotein D isoform c ...
SCRT1                 0.049   scratch 
PURA                  0.047   purine-rich element binding protein A 
FOXC1                 0.044   forkhead box C1 
CADPS                 0.044   Ca2+-dependent secretion activator isoform 2 
CADPS                 0.044   Ca2+-dependent secretion activator isoform 1 
CADPS                 0.044   Ca2+-dependent secretion activator isoform 3 
YEATS2                0.044   YEATS domain containing 2 
RFX1                  0.044   regulatory factor X1 
GSK3A                 0.044   glycogen synthase kinase 3 alpha 
HOXD11                0.042   homeobox D11 
KRT9                  0.042   keratin 9 
FUSSEL18              0.042   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.042   PREDICTED: functional smad suppressing element 18 [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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