Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ZMYND8 Sequence: fasta or formatted (1135aa) NCBI GI: 34335264
Description:

zinc finger, MYND-type containing 8 isoform c

Referenced in:

Inositol Pathways
PHD Finger Proteins
Zinc Finger Proteins

Other entries for this name:
alt prot [1188aa] zinc finger, MYND-type containing 8 isoform a
alt prot [1160aa] zinc finger, MYND-type containing 8 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         75           2
 C cysteine            2.5         28           2
 D aspartate           5.6         63           2
 E glutamate           8.5         96           3
 F phenylalanine       2.2         25           2
 G glycine             4.0         45           2
 H histidine           2.2         25           1
 I isoleucine          4.1         46           2
 K lysine              9.5        108           5
 L leucine             6.3         72           2
 M methionine          2.4         27           2
 N asparagine          3.5         40           2
 P proline             6.8         77           2
 Q glutamine           4.9         56           3
 R arginine            3.3         37           2
 S serine             12.6        143           4
 T threonine           7.8         89           2
 V valine              4.3         49           2
 W tryptophan          1.2         14           1
 Y tyrosine            1.8         20           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger, MYND-type containing 8 isoform c 
ZMYND8                0.994   zinc finger, MYND-type containing 8 isoform b 
ZMYND8                0.985   zinc finger, MYND-type containing 8 isoform a 
ZMYND11               0.071   zinc finger, MYND domain containing 11 isoform a [H...
ZMYND11               0.071   zinc finger, MYND domain containing 11 isoform a [H...
ZMYND11               0.069   zinc finger, MYND domain containing 11 isoform b [H...
TRIM24                0.029   transcriptional intermediary factor 1 alpha isoform ...
TRIM24                0.029   transcriptional intermediary factor 1 alpha isoform ...
TRIM33                0.029   tripartite motif-containing 33 protein isoform beta ...
TRIM33                0.025   tripartite motif-containing 33 protein isoform alpha...
DSPP                  0.025   dentin sialophosphoprotein preproprotein 
BPTF                  0.022   bromodomain PHD finger transcription factor isoform ...
BPTF                  0.022   bromodomain PHD finger transcription factor isoform ...
NEFH                  0.020   neurofilament, heavy polypeptide 200kDa 
TRIM66                0.020   tripartite motif-containing 66 
PRG4                  0.019   proteoglycan 4 isoform B 
PRG4                  0.019   proteoglycan 4 isoform A 
TAF1                  0.019   TBP-associated factor 1 isoform 2 
TAF1                  0.019   TBP-associated factor 1 isoform 1 
TAF1L                 0.019   TBP-associated factor RNA polymerase 1-like 
PRG4                  0.018   proteoglycan 4 isoform D 
PRG4                  0.018   proteoglycan 4 isoform C 
CHD4                  0.017   chromodomain helicase DNA binding protein 4 
CHD5                  0.017   chromodomain helicase DNA binding protein 5 
CHD3                  0.017   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.017   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.017   chromodomain helicase DNA binding protein 3 isoform...
LOC100294249          0.016   PREDICTED: hypothetical protein XP_002344067 
PHF21A                0.016   BRAF35/HDAC2 complex isoform a 
LOC729792             0.015   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press