Guide to the Human Genome
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Name: TAF1 Sequence: fasta or formatted (1872aa) NCBI GI: 20357588
Description:

TBP-associated factor 1 isoform 2

Referenced in:

Bromodomain Family
RNA Polymerase and General Transcription Factors

Other entries for this name:
alt prot [1893aa] TBP-associated factor 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         97           3
 C cysteine            1.3         25           2
 D aspartate           7.7        145           4
 E glutamate          10.3        193           5
 F phenylalanine       3.3         61           2
 G glycine             5.9        110           3
 H histidine           1.9         35           2
 I isoleucine          4.4         83           2
 K lysine              7.4        139           3
 L leucine             8.1        152           3
 M methionine          2.9         55           2
 N asparagine          3.6         68           2
 P proline             6.3        118           7
 Q glutamine           4.6         86           2
 R arginine            5.7        106           3
 S serine              7.6        143           4
 T threonine           5.1         95           2
 V valine              4.7         88           2
 W tryptophan          1.0         18           2
 Y tyrosine            2.9         55           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TBP-associated factor 1 isoform 2 
TAF1                  0.997   TBP-associated factor 1 isoform 1 
TAF1L                 0.890   TBP-associated factor RNA polymerase 1-like 
PBRM1                 0.016   polybromo 1 isoform 1 
PBRM1                 0.016   polybromo 1 isoform 2 
PBRM1                 0.016   polybromo 1 isoform 4 
CECR2                 0.014   cat eye syndrome chromosome region, candidate 2 [Ho...
KAT2A                 0.013   general control of amino acid synthesis 5-like 2 [H...
BRD2                  0.013   bromodomain containing 2 
BRD2                  0.013   bromodomain containing 2 
BRD3                  0.012   bromodomain containing protein 3 
ZMYND8                0.011   zinc finger, MYND-type containing 8 isoform c 
ZMYND8                0.011   zinc finger, MYND-type containing 8 isoform a 
ZMYND8                0.011   zinc finger, MYND-type containing 8 isoform b 
KAT2B                 0.011   K(lysine) acetyltransferase 2B 
BAZ2B                 0.011   bromodomain adjacent to zinc finger domain, 2B [Homo...
BRDT                  0.011   testis-specific bromodomain protein 
BRDT                  0.011   testis-specific bromodomain protein 
BRD4                  0.010   bromodomain-containing protein 4 isoform short 
BRD4                  0.010   bromodomain-containing protein 4 isoform long 
PHIP                  0.010   pleckstrin homology domain interacting protein [Homo...
BRPF3                 0.010   bromodomain and PHD finger containing, 3 
BAZ1A                 0.010   bromodomain adjacent to zinc finger domain, 1A isofo...
BAZ1A                 0.010   bromodomain adjacent to zinc finger domain, 1A isofo...
BPTF                  0.010   bromodomain PHD finger transcription factor isoform ...
BPTF                  0.010   bromodomain PHD finger transcription factor isoform ...
CREBBP                0.009   CREB binding protein isoform b 
CREBBP                0.009   CREB binding protein isoform a 
BRWD1                 0.009   bromodomain and WD repeat domain containing 1 isofor...
BRWD1                 0.009   bromodomain and WD repeat domain containing 1 isofor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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