TAF1 12055

Name: TAF1	Sequence: fasta or formatted (1872aa)		NCBI GI: 20357588
Description: TBP-associated factor 1 isoform 2		Referenced in: Bromodomain Family RNA Polymerase and General Transcription Factors
Other entries for this name: alt prot [1893aa] TBP-associated factor 1 isoform 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.2 97 3 C cysteine 1.3 25 2 D aspartate 7.7 145 4 E glutamate 10.3 193 5 F phenylalanine 3.3 61 2 G glycine 5.9 110 3 H histidine 1.9 35 2 I isoleucine 4.4 83 2 K lysine 7.4 139 3 L leucine 8.1 152 3 M methionine 2.9 55 2 N asparagine 3.6 68 2 P proline 6.3 118 7 Q glutamine 4.6 86 2 R arginine 5.7 106 3 S serine 7.6 143 4 T threonine 5.1 95 2 V valine 4.7 88 2 W tryptophan 1.0 18 2 Y tyrosine 2.9 55 3			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 TBP-associated factor 1 isoform 2 TAF1 0.997 TBP-associated factor 1 isoform 1 TAF1L 0.890 TBP-associated factor RNA polymerase 1-like PBRM1 0.016 polybromo 1 isoform 1 PBRM1 0.016 polybromo 1 isoform 2 PBRM1 0.016 polybromo 1 isoform 4 CECR2 0.014 cat eye syndrome chromosome region, candidate 2 [Ho... KAT2A 0.013 general control of amino acid synthesis 5-like 2 [H... BRD2 0.013 bromodomain containing 2 BRD2 0.013 bromodomain containing 2 BRD3 0.012 bromodomain containing protein 3 ZMYND8 0.011 zinc finger, MYND-type containing 8 isoform c ZMYND8 0.011 zinc finger, MYND-type containing 8 isoform a ZMYND8 0.011 zinc finger, MYND-type containing 8 isoform b KAT2B 0.011 K(lysine) acetyltransferase 2B BAZ2B 0.011 bromodomain adjacent to zinc finger domain, 2B [Homo... BRDT 0.011 testis-specific bromodomain protein BRDT 0.011 testis-specific bromodomain protein BRD4 0.010 bromodomain-containing protein 4 isoform short BRD4 0.010 bromodomain-containing protein 4 isoform long PHIP 0.010 pleckstrin homology domain interacting protein [Homo... BRPF3 0.010 bromodomain and PHD finger containing, 3 BAZ1A 0.010 bromodomain adjacent to zinc finger domain, 1A isofo... BAZ1A 0.010 bromodomain adjacent to zinc finger domain, 1A isofo... BPTF 0.010 bromodomain PHD finger transcription factor isoform ... BPTF 0.010 bromodomain PHD finger transcription factor isoform ... CREBBP 0.009 CREB binding protein isoform b CREBBP 0.009 CREB binding protein isoform a BRWD1 0.009 bromodomain and WD repeat domain containing 1 isofor... BRWD1 0.009 bromodomain and WD repeat domain containing 1 isofor... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.