Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ZMYND11 Sequence: fasta or formatted (602aa) NCBI GI: 238814385
Description:

zinc finger, MYND domain containing 11 isoform a

Referenced in:

Zinc Finger Proteins

Other entries for this name:
alt prot [567aa] zinc finger, MYND domain containing 11 isoform b
alt mRNA [602aa] zinc finger, MYND domain containing 11 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         31           2
 C cysteine            4.2         25           2
 D aspartate           4.8         29           1
 E glutamate          10.0         60           3
 F phenylalanine       2.8         17           2
 G glycine             3.5         21           1
 H histidine           4.2         25           3
 I isoleucine          4.8         29           2
 K lysine             10.3         62           3
 L leucine             5.8         35           3
 M methionine          3.0         18           1
 N asparagine          4.2         25           1
 P proline             3.3         20           1
 Q glutamine           5.6         34           2
 R arginine            7.1         43           2
 S serine              6.3         38           3
 T threonine           4.8         29           2
 V valine              5.1         31           2
 W tryptophan          2.3         14           1
 Y tyrosine            2.7         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger, MYND domain containing 11 isoform a [H... 
ZMYND11               1.000   zinc finger, MYND domain containing 11 isoform a [H...
ZMYND11               0.916   zinc finger, MYND domain containing 11 isoform b [H...
ZMYND8                0.130   zinc finger, MYND-type containing 8 isoform a 
ZMYND8                0.130   zinc finger, MYND-type containing 8 isoform b 
ZMYND8                0.130   zinc finger, MYND-type containing 8 isoform c 
LOC283767             0.023   golgi autoantigen, golgin subfamily a-like 
CHD3                  0.023   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.023   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.023   chromodomain helicase DNA binding protein 3 isoform...
TRIM33                0.022   tripartite motif-containing 33 protein isoform beta ...
LOC645202             0.021   PREDICTED: hypothetical protein LOC645202 
PSIP1                 0.019   PC4 and SFRS1 interacting protein 1 isoform 2 [Homo...
PSIP1                 0.019   PC4 and SFRS1 interacting protein 1 isoform 1 [Homo...
PSIP1                 0.019   PC4 and SFRS1 interacting protein 1 isoform 2 
TMC1                  0.019   transmembrane channel-like 1 
CHD5                  0.019   chromodomain helicase DNA binding protein 5 
CHD4                  0.019   chromodomain helicase DNA binding protein 4 
CEP164                0.018   centrosomal protein 164kDa 
TCHH                  0.017   trichohyalin 
TRIM33                0.016   tripartite motif-containing 33 protein isoform alpha...
PHF21A                0.016   BRAF35/HDAC2 complex isoform b 
HSPA4                 0.015   heat shock 70kDa protein 4 
DSP                   0.015   desmoplakin isoform I 
PHF21A                0.015   BRAF35/HDAC2 complex isoform a 
HGS                   0.015   hepatocyte growth factor-regulated tyrosine kinase su...
MYO6                  0.015   myosin VI 
MAP1B                 0.015   microtubule-associated protein 1B 
RUNX1T1               0.015   acute myelogenous leukemia 1 translocation 1 protein...
RUNX1T1               0.015   acute myelogenous leukemia 1 translocation 1 protein...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press