Guide to the Human Genome
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Name: ZMYND11 Sequence: fasta or formatted (567aa) NCBI GI: 238814387
Description:

zinc finger, MYND domain containing 11 isoform b

Referenced in:

Zinc Finger Proteins

Other entries for this name:
alt prot [602aa] zinc finger, MYND domain containing 11 isoform a
alt prot [602aa] zinc finger, MYND domain containing 11 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         28           2
 C cysteine            3.2         18           1
 D aspartate           5.1         29           1
 E glutamate           9.7         55           3
 F phenylalanine       3.2         18           2
 G glycine             3.7         21           1
 H histidine           3.7         21           3
 I isoleucine          4.9         28           2
 K lysine             10.4         59           3
 L leucine             6.3         36           3
 M methionine          3.0         17           1
 N asparagine          4.2         24           1
 P proline             3.5         20           1
 Q glutamine           5.6         32           1
 R arginine            6.9         39           2
 S serine              6.5         37           3
 T threonine           4.9         28           2
 V valine              5.6         32           2
 W tryptophan          2.1         12           1
 Y tyrosine            2.3         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger, MYND domain containing 11 isoform b [H... 
ZMYND11               0.986   zinc finger, MYND domain containing 11 isoform a [H...
ZMYND11               0.986   zinc finger, MYND domain containing 11 isoform a [H...
ZMYND8                0.137   zinc finger, MYND-type containing 8 isoform a 
ZMYND8                0.137   zinc finger, MYND-type containing 8 isoform b 
ZMYND8                0.137   zinc finger, MYND-type containing 8 isoform c 
CHD3                  0.024   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.024   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.024   chromodomain helicase DNA binding protein 3 isoform...
LOC283767             0.023   golgi autoantigen, golgin subfamily a-like 
LOC645202             0.023   PREDICTED: hypothetical protein LOC645202 
PSIP1                 0.021   PC4 and SFRS1 interacting protein 1 isoform 2 [Homo...
PSIP1                 0.021   PC4 and SFRS1 interacting protein 1 isoform 1 [Homo...
PSIP1                 0.021   PC4 and SFRS1 interacting protein 1 isoform 2 
TMC1                  0.021   transmembrane channel-like 1 
CHD5                  0.021   chromodomain helicase DNA binding protein 5 
CHD4                  0.020   chromodomain helicase DNA binding protein 4 
TRIM33                0.019   tripartite motif-containing 33 protein isoform beta ...
CEP164                0.019   centrosomal protein 164kDa 
TCHH                  0.018   trichohyalin 
TRIM33                0.017   tripartite motif-containing 33 protein isoform alpha...
PHF21A                0.017   BRAF35/HDAC2 complex isoform b 
HSPA4                 0.017   heat shock 70kDa protein 4 
PHF21A                0.017   BRAF35/HDAC2 complex isoform a 
HGS                   0.017   hepatocyte growth factor-regulated tyrosine kinase su...
MYO6                  0.016   myosin VI 
MAP1B                 0.016   microtubule-associated protein 1B 
DNAJC2                0.015   DnaJ (Hsp40) homolog, subfamily C, member 2 isoform ...
C2orf77               0.015   hypothetical protein LOC129881 
LOC647042             0.015   PREDICTED: hypothetical protein isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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