Guide to the Human Genome
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Name: SETD5 Sequence: fasta or formatted (1442aa) NCBI GI: 122937492
Description:

SET domain containing 5

Referenced in:

PHD Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         85           2
 C cysteine            1.9         28           1
 D aspartate           4.2         60           2
 E glutamate           6.8         98           3
 F phenylalanine       1.9         27           2
 G glycine             6.5         94           4
 H histidine           2.6         37           1
 I isoleucine          2.8         41           2
 K lysine              5.3         77           2
 L leucine             7.3        105           2
 M methionine          1.3         19           1
 N asparagine          4.4         64           2
 P proline             8.3        119           4
 Q glutamine           4.7         68           2
 R arginine            6.8         98           4
 S serine             13.9        201           5
 T threonine           7.3        105           4
 V valine              4.8         69           2
 W tryptophan          0.6          9           1
 Y tyrosine            2.6         38           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SET domain containing 5 
MLL5                  0.194   myeloid/lymphoid or mixed-lineage leukemia 5 
MLL5                  0.194   myeloid/lymphoid or mixed-lineage leukemia 5 
DPCR1                 0.014   diffuse panbronchiolitis critical region 1 protein ...
SETD2                 0.014   SET domain containing 2 
LOC100133915          0.014   PREDICTED: hypothetical protein 
MUC12                 0.013   PREDICTED: mucin 12 
ASH1L                 0.013   absent, small, or homeotic 1-like 
DSPP                  0.012   dentin sialophosphoprotein preproprotein 
MUC17                 0.012   mucin 17 
USP31                 0.011   ubiquitin specific peptidase 31 
BAT2D1                0.011   HBxAg transactivated protein 2 
MLL                   0.011   myeloid/lymphoid or mixed-lineage leukemia protein [...
POLR2A                0.011   DNA-directed RNA polymerase II A 
LOC100294236          0.011   PREDICTED: similar to diffuse panbronchiolitis crit...
SETD1A                0.011   SET domain containing 1A 
MUC12                 0.011   PREDICTED: mucin 12, cell surface associated 
LOC729815             0.011   PREDICTED: hypothetical protein 
LOC729815             0.010   PREDICTED: hypothetical protein 
MUC12                 0.010   PREDICTED: mucin 12 
LOC100133714          0.010   PREDICTED: similar to Mucin-12, partial 
MLL2                  0.010   myeloid/lymphoid or mixed-lineage leukemia 2 
MLL4                  0.010   myeloid/lymphoid or mixed-lineage leukemia 4 
LOC100133756          0.010   PREDICTED: hypothetical protein, partial 
ARID1A                0.010   AT rich interactive domain 1A isoform a 
ARID1A                0.010   AT rich interactive domain 1A isoform b 
FLJ22184              0.009   PREDICTED: hypothetical protein FLJ22184 
MED1                  0.009   mediator complex subunit 1 
NUP214                0.009   nucleoporin 214kDa 
MUC21                 0.009   mucin 21 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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