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Search of human proteins with 31791022
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|31791022 keratin associated protein 19-5 [Homo sapiens]
(72 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|31791022 keratin associated protein 19-5 [Homo sapiens] 174 1e-44
gi|31791026 keratin associated protein 19-3 [Homo sapiens] 137 2e-33
gi|31791030 keratin associated protein 19-1 [Homo sapiens] 125 9e-30
gi|31791028 keratin associated protein 19-4 [Homo sapiens] 112 6e-26
gi|149944573 keratin associated protein 19-8 [Homo sapiens] 109 5e-25
gi|31791018 keratin associated protein 19-7 [Homo sapiens] 108 7e-25
gi|31791014 keratin associated protein 20-2 [Homo sapiens] 98 2e-21
gi|31791024 keratin associated protein 19-6 [Homo sapiens] 96 8e-21
gi|31791032 keratin associated protein 19-2 [Homo sapiens] 74 2e-14
gi|31791038 keratin associated protein 6-1 [Homo sapiens] 73 4e-14
gi|31791020 keratin associated protein 20-1 [Homo sapiens] 71 2e-13
gi|153945796 keratin associated protein 6-3 [Homo sapiens] 64 2e-11
gi|31791016 keratin associated protein 21-2 [Homo sapiens] 64 3e-11
gi|31791010 keratin associated protein 21-1 [Homo sapiens] 62 7e-11
gi|31791040 keratin associated protein 6-2 [Homo sapiens] 62 7e-11
gi|109288006 keratin associated protein 13-1 [Homo sapiens] 60 4e-10
gi|169206147 PREDICTED: hypothetical protein [Homo sapiens] 60 5e-10
gi|239750526 PREDICTED: hypothetical protein [Homo sapiens] 60 5e-10
gi|169205935 PREDICTED: hypothetical protein [Homo sapiens] 60 5e-10
gi|239744833 PREDICTED: hypothetical protein [Homo sapiens] 56 7e-09
gi|189303554 keratin associated protein 20-3 [Homo sapiens] 51 2e-07
gi|31791006 keratin associated protein 13-2 [Homo sapiens] 51 2e-07
gi|119395754 keratin 5 [Homo sapiens] 51 2e-07
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap... 50 3e-07
gi|119395750 keratin 1 [Homo sapiens] 50 5e-07
gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens] 47 2e-06
gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens] 47 2e-06
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi... 47 2e-06
gi|109452587 family with sequence similarity 98, member B isofor... 47 2e-06
gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b... 47 3e-06
>gi|31791022 keratin associated protein 19-5 [Homo sapiens]
Length = 72
Score = 174 bits (441), Expect = 1e-44
Identities = 72/72 (100%), Positives = 72/72 (100%)
Query: 1 MNYYGNYYGGLGYGYGGFDDLGYGYGCGCGSFRRLGYGGGYGGYGYGSGFGGYGYRSCRP 60
MNYYGNYYGGLGYGYGGFDDLGYGYGCGCGSFRRLGYGGGYGGYGYGSGFGGYGYRSCRP
Sbjct: 1 MNYYGNYYGGLGYGYGGFDDLGYGYGCGCGSFRRLGYGGGYGGYGYGSGFGGYGYRSCRP 60
Query: 61 SCYGGYGFSGFY 72
SCYGGYGFSGFY
Sbjct: 61 SCYGGYGFSGFY 72
>gi|31791026 keratin associated protein 19-3 [Homo sapiens]
Length = 81
Score = 137 bits (344), Expect = 2e-33
Identities = 61/81 (75%), Positives = 64/81 (79%), Gaps = 9/81 (11%)
Query: 1 MNYYGNYYGGLGYGYGGFDDLGYGYGCGCGSFRRL---------GYGGGYGGYGYGSGFG 51
M+YYG+YYGGLGYG GGF LGYGYGCGCGSFRRL GYG G+GGYGYGSGFG
Sbjct: 1 MSYYGSYYGGLGYGCGGFGGLGYGYGCGCGSFRRLGSGCGYGGYGYGSGFGGYGYGSGFG 60
Query: 52 GYGYRSCRPSCYGGYGFSGFY 72
GYGY RPS YGGYGFSGFY
Sbjct: 61 GYGYGCYRPSYYGGYGFSGFY 81
>gi|31791030 keratin associated protein 19-1 [Homo sapiens]
Length = 90
Score = 125 bits (313), Expect = 9e-30
Identities = 57/90 (63%), Positives = 61/90 (67%), Gaps = 18/90 (20%)
Query: 1 MNYYGNYYGGLGYGYGGFDDLGYGYGCGCGSFRR------------------LGYGGGYG 42
M++YG+YYGGLGY GGF LGYGYGCGCGSF R GYG G+G
Sbjct: 1 MSHYGSYYGGLGYSCGGFGGLGYGYGCGCGSFCRRGSGCGYGGYGYGSGFGSYGYGSGFG 60
Query: 43 GYGYGSGFGGYGYRSCRPSCYGGYGFSGFY 72
GYGYGSGFGGYGY CRPS GGYGFSGFY
Sbjct: 61 GYGYGSGFGGYGYGCCRPSYNGGYGFSGFY 90
>gi|31791028 keratin associated protein 19-4 [Homo sapiens]
Length = 84
Score = 112 bits (280), Expect = 6e-26
Identities = 50/69 (72%), Positives = 53/69 (76%), Gaps = 9/69 (13%)
Query: 1 MNYYGNYYGGLGYGYGGFDDLGYGYGCGCGSFRRLGYGGGYGGYGYGSGFGGYGYRSCRP 60
M+YYG+YY GLGYG GGF LGYGYGCGCGSFRRLGYG G+GG GYG CRP
Sbjct: 1 MSYYGSYYRGLGYGCGGFGGLGYGYGCGCGSFRRLGYGCGFGGNGYG---------YCRP 51
Query: 61 SCYGGYGFS 69
SCYGGYGFS
Sbjct: 52 SCYGGYGFS 60
>gi|149944573 keratin associated protein 19-8 [Homo sapiens]
Length = 63
Score = 109 bits (272), Expect = 5e-25
Identities = 49/72 (68%), Positives = 52/72 (72%), Gaps = 9/72 (12%)
Query: 1 MNYYGNYYGGLGYGYGGFDDLGYGYGCGCGSFRRLGYGGGYGGYGYGSGFGGYGYRSCRP 60
M+YY +YYGGLGYGYGGF GYGYGCG GSFRRLGYG GYGGYG+ CRP
Sbjct: 1 MSYYRSYYGGLGYGYGGFGGWGYGYGCGYGSFRRLGYGCGYGGYGFS---------CCRP 51
Query: 61 SCYGGYGFSGFY 72
YGGYGFS FY
Sbjct: 52 LYYGGYGFSAFY 63
>gi|31791018 keratin associated protein 19-7 [Homo sapiens]
Length = 63
Score = 108 bits (271), Expect = 7e-25
Identities = 49/72 (68%), Positives = 51/72 (70%), Gaps = 9/72 (12%)
Query: 1 MNYYGNYYGGLGYGYGGFDDLGYGYGCGCGSFRRLGYGGGYGGYGYGSGFGGYGYRSCRP 60
M+Y G+YYGGLGYG GGF LGYGY CGCGSFRRLGYG GYGGY Y C P
Sbjct: 1 MSYSGSYYGGLGYGCGGFGGLGYGYSCGCGSFRRLGYGCGYGGYRYS---------CCHP 51
Query: 61 SCYGGYGFSGFY 72
SCYGGY SGFY
Sbjct: 52 SCYGGYWSSGFY 63
>gi|31791014 keratin associated protein 20-2 [Homo sapiens]
Length = 65
Score = 97.8 bits (242), Expect = 2e-21
Identities = 48/74 (64%), Positives = 49/74 (66%), Gaps = 11/74 (14%)
Query: 1 MNYYGNYYGGLGYGYGGFDDLGYGYGCGCGSFRRLGYGGGYGGYG--YGSGFGGYGYRSC 58
M YY NYYGGL YGYG LG GYGCGCG YG GYGG G YG G+GGYGY C
Sbjct: 1 MCYYSNYYGGLRYGYGV---LGGGYGCGCG------YGHGYGGLGCGYGRGYGGYGYGCC 51
Query: 59 RPSCYGGYGFSGFY 72
RPSCYG Y GFY
Sbjct: 52 RPSCYGRYWSCGFY 65
>gi|31791024 keratin associated protein 19-6 [Homo sapiens]
Length = 58
Score = 95.5 bits (236), Expect = 8e-21
Identities = 45/72 (62%), Positives = 47/72 (65%), Gaps = 14/72 (19%)
Query: 1 MNYYGNYYGGLGYGYGGFDDLGYGYGCGCGSFRRLGYGGGYGGYGYGSGFGGYGYRSCRP 60
M YYG+YY GLGYG GGF G GYGCGCG GY YGSG+GGY Y CRP
Sbjct: 1 MRYYGSYYRGLGYGCGGFG--GLGYGCGCG------------GYRYGSGYGGYRYGCCRP 46
Query: 61 SCYGGYGFSGFY 72
SC GYGFSGFY
Sbjct: 47 SCREGYGFSGFY 58
>gi|31791032 keratin associated protein 19-2 [Homo sapiens]
Length = 52
Score = 73.9 bits (180), Expect = 2e-14
Identities = 33/50 (66%), Positives = 34/50 (68%)
Query: 23 YGYGCGCGSFRRLGYGGGYGGYGYGSGFGGYGYRSCRPSCYGGYGFSGFY 72
YGYGCGCGSF RLGYG GY G YG G G G C PSCY Y F+GFY
Sbjct: 3 YGYGCGCGSFCRLGYGCGYEGCRYGCGHRGCGDGCCCPSCYRRYRFTGFY 52
>gi|31791038 keratin associated protein 6-1 [Homo sapiens]
Length = 71
Score = 73.2 bits (178), Expect = 4e-14
Identities = 40/69 (57%), Positives = 43/69 (62%), Gaps = 16/69 (23%)
Query: 2 NYYGNYYGGLGYGYGGFDDLGYGYG---------CGCGSFRRLGYGGGYG-----GYGYG 47
+YYGNYYG GYG+ G+ LGYGYG CGCG FRRLG G GYG GYGYG
Sbjct: 4 SYYGNYYGTPGYGFCGYGGLGYGYGGLGCGYGSCCGCG-FRRLGCGYGYGSRSLCGYGYG 62
Query: 48 SGFG-GYGY 55
G G GY Y
Sbjct: 63 CGSGSGYYY 71
Score = 30.8 bits (68), Expect = 0.24
Identities = 23/51 (45%), Positives = 25/51 (49%), Gaps = 12/51 (23%)
Query: 29 CGSFRRLGYGG-GYGGYGYGS---GFGGY--GYRSC------RPSCYGGYG 67
CGS+ YG GYG GYG G+GG GY SC R C GYG
Sbjct: 2 CGSYYGNYYGTPGYGFCGYGGLGYGYGGLGCGYGSCCGCGFRRLGCGYGYG 52
>gi|31791020 keratin associated protein 20-1 [Homo sapiens]
Length = 56
Score = 70.9 bits (172), Expect = 2e-13
Identities = 42/72 (58%), Positives = 43/72 (59%), Gaps = 16/72 (22%)
Query: 1 MNYYGNYYGGLGYGYGGFDDLGYGYGCGCGSFRRLGYGGGYGGYGYGSGFGGYGYRSCRP 60
M YY NYYGG YGYGG LG GYGCG +R GYG GYGGYG GYG P
Sbjct: 1 MIYYSNYYGG--YGYGG---LGCGYGCG---YR--GYGCGYGGYG------GYGNGYYCP 44
Query: 61 SCYGGYGFSGFY 72
SCYG Y GFY
Sbjct: 45 SCYGRYWSYGFY 56
>gi|153945796 keratin associated protein 6-3 [Homo sapiens]
Length = 110
Score = 64.3 bits (155), Expect = 2e-11
Identities = 35/67 (52%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 8 YGGLGYGYGGFDDLGY-GYGCGCGSFRRLGYGGGYGGYGYGSGFGGYGYRSCRPSCYGGY 66
YGGLG+GYGG D GY G GCG GSF GY G GYG G G+ + + C C GY
Sbjct: 44 YGGLGFGYGGL-DCGYGGLGCGYGSFCGCGYRGLDCGYGCGYGYVSHSFCGCGYRCGSGY 102
Query: 67 GFS-GFY 72
G S G+Y
Sbjct: 103 GSSFGYY 109
Score = 58.5 bits (140), Expect = 1e-09
Identities = 39/79 (49%), Positives = 42/79 (53%), Gaps = 15/79 (18%)
Query: 2 NYYGNYYGGLGYGYGGFDDLGYGYG------CGCGSFRRLGYGG---GYGGYGYGSG-FG 51
+YY NY GG GYG G+ LG GYG CG G GYGG GYGG G G G F
Sbjct: 11 SYYRNYNGGHGYGCCGYGGLGCGYGGCGYGCCGYGGL-GFGYGGLDCGYGGLGCGYGSFC 69
Query: 52 GYGYR--SCRPSCYGGYGF 68
G GYR C C GYG+
Sbjct: 70 GCGYRGLDCGYGC--GYGY 86
Score = 34.7 bits (78), Expect = 0.017
Identities = 22/43 (51%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Query: 29 CGSFRRLGYGG-GYGGYGYGSGFGGYGYRSCRPSC--YGGYGF 68
CGS+ R GG GYG GYG G GY C C YGG GF
Sbjct: 9 CGSYYRNYNGGHGYGCCGYGGL--GCGYGGCGYGCCGYGGLGF 49
Score = 27.7 bits (60), Expect = 2.0
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 12/49 (24%)
Query: 4 YGNYYG--------GLGYGYGGFDDLGYGYGCGCGSFRRLGYGGGYGGY 44
YG++ G G G GYG G G CGS GYG +G Y
Sbjct: 65 YGSFCGCGYRGLDCGYGCGYGYVSHSFCGCGYRCGS----GYGSSFGYY 109
>gi|31791016 keratin associated protein 21-2 [Homo sapiens]
Length = 83
Score = 63.5 bits (153), Expect = 3e-11
Identities = 37/80 (46%), Positives = 38/80 (47%), Gaps = 18/80 (22%)
Query: 2 NYYGNYYGGLGYGYGGFDDLGYGYGCGCGSFRRLGYGGGYG-GYGYGSGFG---GYG--- 54
NYY N GG GYG G GYG G GCG YG GYG G GYG G+G GYG
Sbjct: 4 NYYRNCCGGCGYGSGWSSGCGYGCGYGCGYGSGCRYGSGYGTGCGYGCGYGSGCGYGCGY 63
Query: 55 -----------YRSCRPSCY 63
YR C SCY
Sbjct: 64 SSSCCGYRPLCYRRCYSSCY 83
>gi|31791010 keratin associated protein 21-1 [Homo sapiens]
Length = 79
Score = 62.4 bits (150), Expect = 7e-11
Identities = 38/76 (50%), Positives = 40/76 (52%), Gaps = 15/76 (19%)
Query: 2 NYYGNYYG-----GLGYGYGGFDDLGYG------YGCGCGSFRRLGYGGGYG-GYGYGSG 49
NYYGN G G GYG G GYG YGCG GS GYG GYG GYG GSG
Sbjct: 4 NYYGNSCGYGSGCGCGYGSGSGCGCGYGTGYGCGYGCGFGSHYGCGYGTGYGCGYGSGSG 63
Query: 50 FGGYG---YRSCRPSC 62
+ GY +R C SC
Sbjct: 64 YCGYRPFCFRRCYSSC 79
>gi|31791040 keratin associated protein 6-2 [Homo sapiens]
Length = 62
Score = 62.4 bits (150), Expect = 7e-11
Identities = 32/58 (55%), Positives = 35/58 (60%), Gaps = 6/58 (10%)
Query: 2 NYYGNYYGGLGYGYGGFDDLGYGYG-CGCGSFRRLGYGGGYG-----GYGYGSGFGGY 53
+YYGNYYG GYG G++ LGYGYG CG GYG GYG G GYG G G Y
Sbjct: 4 SYYGNYYGDHGYGCCGYEGLGYGYGSLRCGYSSCCGYGHGYGSRFFCGCGYGCGSGYY 61
>gi|109288006 keratin associated protein 13-1 [Homo sapiens]
Length = 172
Score = 60.1 bits (144), Expect = 4e-10
Identities = 38/76 (50%), Positives = 41/76 (53%), Gaps = 10/76 (13%)
Query: 7 YYGGLGYGYGGFDDLGYG----YGCGCGS--FRRLGYGG-GYGGYGYGSGFGGYGY---R 56
Y G LG+G LGYG Y GCGS FR LGYGG G+ GYG GF Y R
Sbjct: 96 YSGSLGFGSSSCRSLGYGSRSCYSVGCGSSGFRSLGYGGCGFPSLGYGVGFCRPTYLASR 155
Query: 57 SCRPSCYGGYGFSGFY 72
SC+ SCY SGFY
Sbjct: 156 SCQSSCYRPTCGSGFY 171
>gi|169206147 PREDICTED: hypothetical protein [Homo sapiens]
Length = 93
Score = 59.7 bits (143), Expect = 5e-10
Identities = 37/83 (44%), Positives = 40/83 (48%), Gaps = 21/83 (25%)
Query: 2 NYYGN-----------YYGGLGYGYGGFDDLGYG--YGCGCGSFRRLGYGGGYG---GYG 45
NYYGN Y G G GYG GYG Y CG GS GYG GYG G G
Sbjct: 4 NYYGNSCGYGCSYGCGYGSGYGCGYGSSYGCGYGTGYSCGYGSGSGCGYGTGYGCGYGCG 63
Query: 46 YGSGFG-----GYGYRSCRPSCY 63
YG+G+G G GY RP C+
Sbjct: 64 YGTGYGCGCGSGSGYCGYRPFCF 86
Score = 52.0 bits (123), Expect = 1e-07
Identities = 35/70 (50%), Positives = 38/70 (54%), Gaps = 15/70 (21%)
Query: 4 YGNYYG---GLGY--GYGGFDDLGYG--YGCGCGSFRRLGYGGGYG-GYGYGSGFGGYG- 54
YG+ YG G GY GYG GYG YGCG G GYG GYG G G GSG+ GY
Sbjct: 28 YGSSYGCGYGTGYSCGYGSGSGCGYGTGYGCGYG----CGYGTGYGCGCGSGSGYCGYRP 83
Query: 55 --YRSCRPSC 62
+R C SC
Sbjct: 84 FCFRRCYSSC 93
>gi|239750526 PREDICTED: hypothetical protein [Homo sapiens]
Length = 93
Score = 59.7 bits (143), Expect = 5e-10
Identities = 37/83 (44%), Positives = 40/83 (48%), Gaps = 21/83 (25%)
Query: 2 NYYGN-----------YYGGLGYGYGGFDDLGYG--YGCGCGSFRRLGYGGGYG---GYG 45
NYYGN Y G G GYG GYG Y CG GS GYG GYG G G
Sbjct: 4 NYYGNSCGYGCSYGCGYGSGYGCGYGSSYGCGYGTGYSCGYGSGSGCGYGTGYGCGYGCG 63
Query: 46 YGSGFG-----GYGYRSCRPSCY 63
YG+G+G G GY RP C+
Sbjct: 64 YGTGYGCGCGSGSGYCGYRPFCF 86
Score = 52.0 bits (123), Expect = 1e-07
Identities = 35/70 (50%), Positives = 38/70 (54%), Gaps = 15/70 (21%)
Query: 4 YGNYYG---GLGY--GYGGFDDLGYG--YGCGCGSFRRLGYGGGYG-GYGYGSGFGGYG- 54
YG+ YG G GY GYG GYG YGCG G GYG GYG G G GSG+ GY
Sbjct: 28 YGSSYGCGYGTGYSCGYGSGSGCGYGTGYGCGYG----CGYGTGYGCGCGSGSGYCGYRP 83
Query: 55 --YRSCRPSC 62
+R C SC
Sbjct: 84 FCFRRCYSSC 93
>gi|169205935 PREDICTED: hypothetical protein [Homo sapiens]
Length = 123
Score = 59.7 bits (143), Expect = 5e-10
Identities = 37/83 (44%), Positives = 40/83 (48%), Gaps = 21/83 (25%)
Query: 2 NYYGN-----------YYGGLGYGYGGFDDLGYG--YGCGCGSFRRLGYGGGYG---GYG 45
NYYGN Y G G GYG GYG Y CG GS GYG GYG G G
Sbjct: 34 NYYGNSCGYGCSYGCGYGSGYGCGYGSSYGCGYGTGYSCGYGSGSGCGYGTGYGCGYGCG 93
Query: 46 YGSGFG-----GYGYRSCRPSCY 63
YG+G+G G GY RP C+
Sbjct: 94 YGTGYGCGCGSGSGYCGYRPFCF 116
Score = 52.0 bits (123), Expect = 1e-07
Identities = 35/70 (50%), Positives = 38/70 (54%), Gaps = 15/70 (21%)
Query: 4 YGNYYG---GLGY--GYGGFDDLGYG--YGCGCGSFRRLGYGGGYG-GYGYGSGFGGYG- 54
YG+ YG G GY GYG GYG YGCG G GYG GYG G G GSG+ GY
Sbjct: 58 YGSSYGCGYGTGYSCGYGSGSGCGYGTGYGCGYG----CGYGTGYGCGCGSGSGYCGYRP 113
Query: 55 --YRSCRPSC 62
+R C SC
Sbjct: 114 FCFRRCYSSC 123
>gi|239744833 PREDICTED: hypothetical protein [Homo sapiens]
Length = 129
Score = 55.8 bits (133), Expect = 7e-09
Identities = 32/68 (47%), Positives = 37/68 (54%), Gaps = 9/68 (13%)
Query: 4 YGNYYGGLGYGYGGFDDLGYGYGCGCGSFRRLGYGGGYG---GYGYGSGFG-----GYGY 55
YG+ YG GYG G G GY CG GS GYG G+G G GYG+G+G G GY
Sbjct: 56 YGSSYG-CGYGTGYSCGYGSGYSCGYGSGSGCGYGTGFGCGYGCGYGTGYGCGCGSGSGY 114
Query: 56 RSCRPSCY 63
RP C+
Sbjct: 115 CGYRPFCF 122
Score = 55.1 bits (131), Expect = 1e-08
Identities = 39/84 (46%), Positives = 42/84 (50%), Gaps = 20/84 (23%)
Query: 2 NYYGNYYG---------GLGYGYGGFDDLGYGYGCGCGSFRRLGYGGGYG---GYGYGSG 49
NYYGN G G GYGYG G YGCG G+ GYG GYG G GYGS
Sbjct: 4 NYYGNSCGYGSSYGCGYGSGYGYGY----GSSYGCGYGTGYSCGYGCGYGSGYGCGYGSS 59
Query: 50 FG-GYGYRSCRPSCYGGYGFSGFY 72
+G GYG SC G G+S Y
Sbjct: 60 YGCGYG---TGYSCGYGSGYSCGY 80
Score = 52.4 bits (124), Expect = 8e-08
Identities = 36/77 (46%), Positives = 40/77 (51%), Gaps = 12/77 (15%)
Query: 4 YGNYYG-GLGYGYGGFDDLGYG--YGCGCGSFRRLGYGGGYGGYGYGSGFG---GYGYRS 57
YG YG G G GYG GYG Y CG GS GYG G G GYG+GFG G GY +
Sbjct: 44 YGCGYGSGYGCGYGSSYGCGYGTGYSCGYGSGYSCGYGSG-SGCGYGTGFGCGYGCGYGT 102
Query: 58 ---CRPSCYGGYGFSGF 71
C C G G+ G+
Sbjct: 103 GYGC--GCGSGSGYCGY 117
Score = 50.1 bits (118), Expect = 4e-07
Identities = 30/64 (46%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 3 YYGNYYGGLGYGYGGFDDLGYGYGCGCGSFRRLGYGGGYG-GYGYGSGFGGYG---YRSC 58
Y Y G GYG GYG G GCG GYG GYG G G GSG+ GY +R C
Sbjct: 68 YSCGYGSGYSCGYGSGSGCGYGTGFGCG--YGCGYGTGYGCGCGSGSGYCGYRPFCFRRC 125
Query: 59 RPSC 62
SC
Sbjct: 126 YSSC 129
>gi|189303554 keratin associated protein 20-3 [Homo sapiens]
Length = 44
Score = 51.2 bits (121), Expect = 2e-07
Identities = 27/45 (60%), Positives = 29/45 (64%), Gaps = 6/45 (13%)
Query: 1 MNYYGNYYGGLGYGYGGFDDLGYGYGCGCGSFRRL--GYGGGYGG 43
M+YYGNYYGGLGYGY D Y Y G G+FR L GY G GG
Sbjct: 1 MSYYGNYYGGLGYGY----DCKYSYTSGFGAFRILDCGYRCGCGG 41
Score = 27.7 bits (60), Expect = 2.0
Identities = 14/34 (41%), Positives = 15/34 (44%), Gaps = 8/34 (23%)
Query: 37 YGGGYGGYGYG--------SGFGGYGYRSCRPSC 62
YG YGG GYG SGFG + C C
Sbjct: 4 YGNYYGGLGYGYDCKYSYTSGFGAFRILDCGYRC 37
>gi|31791006 keratin associated protein 13-2 [Homo sapiens]
Length = 175
Score = 51.2 bits (121), Expect = 2e-07
Identities = 32/67 (47%), Positives = 35/67 (52%), Gaps = 10/67 (14%)
Query: 7 YYGGLGYGYGGFDDLGYG----YGCGCGS--FRRLGYGG-GYGGYGYGSGFGGYGY---R 56
Y G LG+G LGYG Y GCGS R LGYG G+ GYGSGF Y R
Sbjct: 96 YSGSLGFGSSSCRSLGYGSRSCYSVGCGSSGVRSLGYGSCGFPSLGYGSGFCRPTYLASR 155
Query: 57 SCRPSCY 63
SC+ CY
Sbjct: 156 SCQSPCY 162
>gi|119395754 keratin 5 [Homo sapiens]
Length = 590
Score = 50.8 bits (120), Expect = 2e-07
Identities = 28/59 (47%), Positives = 35/59 (59%), Gaps = 6/59 (10%)
Query: 2 NYYGNYYGGLGYGYGGFDDLGYGYGCGCGSFRRLGYGGGYGGYGYGSGFGGYGYRSCRP 60
N +G GG GYG+GG G+G+G G G G+G G GG G+G GFGG G+ C P
Sbjct: 85 NRFGAGAGG-GYGFGGGAGSGFGFGGGAGG----GFGLG-GGAGFGGGFGGPGFPVCPP 137
Score = 34.7 bits (78), Expect = 0.017
Identities = 26/65 (40%), Positives = 31/65 (47%), Gaps = 10/65 (15%)
Query: 12 GYGYGGFDDLG----YGYGCGCGSFR-RLGYGGGYGGYGYGSGFG-GYGYRSCRPSCYGG 65
GYG +LG GSFR R G G G GGYG+G G G G+G+ GG
Sbjct: 59 GYGSRSLYNLGGSKRISISTSGGSFRNRFGAGAG-GGYGFGGGAGSGFGFGG---GAGGG 114
Query: 66 YGFSG 70
+G G
Sbjct: 115 FGLGG 119
Score = 34.7 bits (78), Expect = 0.017
Identities = 22/49 (44%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 22 GYGYGCGCGSFRRLGYGGGYGGYGYGSGFGGYGYRSCRPSCYGGYGFSG 70
GYG G G G G GGG GG G G G G S S GG G G
Sbjct: 501 GYGSGSGYGG----GLGGGLGG-GLGGGLAGGSSGSYYSSSSGGVGLGG 544
Score = 33.9 bits (76), Expect = 0.028
Identities = 26/60 (43%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 10 GLGYGYGGFDDLGYGYGCGCGSFRRLGYGGGYGGYGYGSGFGGYGYRSCRPSCYGGYGFS 69
G G GYGG LG G G G G G GG G Y S GG G GG GFS
Sbjct: 503 GSGSGYGG--GLGGGLGGGLGG----GLAGGSSGSYYSSSSGGVGLGG--GLSVGGSGFS 554
Score = 32.3 bits (72), Expect = 0.082
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 23 YGYGCGCGSFRRLGYGGGYG-GYGYGSGFGGYGYRSCRPSCYGGYGFSGF 71
+G G G G G+GGG G G+G+G G GG GG+G GF
Sbjct: 87 FGAGAGGG----YGFGGGAGSGFGFGGGAGGGFGLGGGAGFGGGFGGPGF 132
Score = 31.6 bits (70), Expect = 0.14
Identities = 26/67 (38%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 7 YYGGLGYGYGGFDDLGYGYGCGCGSFRRLGYGGGYGGYGYGSGF--GGYGYRSCRPSCYG 64
Y GGLG G GG G G G GS Y GG G G G GG G+ + G
Sbjct: 508 YGGGLGGGLGG----GLGGGLAGGSSGSY-YSSSSGGVGLGGGLSVGGSGFSASSGRGLG 562
Query: 65 -GYGFSG 70
G+G G
Sbjct: 563 VGFGSGG 569
>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
sapiens]
Length = 378
Score = 50.4 bits (119), Expect = 3e-07
Identities = 34/73 (46%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 5 GNYYGGLGYGYGGFDDLGYGYGCGCGSFRRLGYGGGYGGY-----GYGSGFGGYGYRSCR 59
G+Y GG G GY GF G YG G G R GYGGG GY GYG G G GY
Sbjct: 258 GSYGGGDG-GYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGYNEGG 316
Query: 60 PSCYGGYGFSGFY 72
G YG G Y
Sbjct: 317 NFGGGNYGGGGNY 329
Score = 42.4 bits (98), Expect = 8e-05
Identities = 29/70 (41%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 10 GLGYGYGGFDDLGYGYGCGCGSFRRLGYGGGYGGYG---------YGSGFGGY-GYRSCR 59
G G G G F G +G G G+F R G GG GGYG YG G GGY G+
Sbjct: 215 GRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGDG 274
Query: 60 PSCYGGYGFS 69
+ GG G+S
Sbjct: 275 GNYGGGPGYS 284
Score = 42.0 bits (97), Expect = 1e-04
Identities = 32/68 (47%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 5 GNYYGGLG-YGYGGFDDLGYGYGCGCGSFRRLGYGGGYGGY-GYGSGFGGYGYRSCRPSC 62
GN+ GG G +G GG GYG G G R YGGG GGY G+G G YG S
Sbjct: 228 GNFGGGGGNFGRGGNFGGRGGYGGGGGGSRG-SYGGGDGGYNGFGGDGGNYG-GGPGYSS 285
Query: 63 YGGYGFSG 70
GGYG G
Sbjct: 286 RGGYGGGG 293
Score = 39.7 bits (91), Expect = 5e-04
Identities = 29/77 (37%), Positives = 34/77 (44%), Gaps = 14/77 (18%)
Query: 4 YGNYYGGLGYGYGGFDDLGYGYGCGCGSFRRLGYGGGYGGYGYGSG----------FGGY 53
YGN GG G G GG+D G G G++ G GG Y +G SG G +
Sbjct: 296 YGNQGGGYG-GGGGYDGYNEGGNFGGGNY---GGGGNYNDFGNYSGQQQSNYGPMKGGSF 351
Query: 54 GYRSCRPSCYGGYGFSG 70
G RS GGYG G
Sbjct: 352 GGRSSGSPYGGGYGSGG 368
Score = 39.3 bits (90), Expect = 7e-04
Identities = 27/57 (47%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 5 GNYYGGLGYG----YGGFDDLGYGYGCGCGSFRRLGYGGGYGG-YGYGSGFGGYGYR 56
GNY GG Y Y G YG G GSF G YGG YG G G GGYG R
Sbjct: 321 GNYGGGGNYNDFGNYSGQQQSNYGPMKG-GSFGGRSSGSPYGGGYGSGGGSGGYGSR 376
Score = 32.3 bits (72), Expect = 0.082
Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 11/71 (15%)
Query: 5 GNYYGGLGYGYGG-FDDLGYGYG---CGCGSFRRLGYGGGYGGYGYGSGFGGYGYRSCRP 60
G +GG YG GG ++D G G G + +GG G YG G+G G
Sbjct: 315 GGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGS---- 370
Query: 61 SCYGGYGFSGF 71
GGYG F
Sbjct: 371 ---GGYGSRRF 378
Score = 27.7 bits (60), Expect = 2.0
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 36 GYGGGYGGY-GYGSGFGGYGYRSCRPSCYGGYGFSG 70
G GGG G + G G FGG G R +GG G G
Sbjct: 215 GRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYG 250
>gi|119395750 keratin 1 [Homo sapiens]
Length = 644
Score = 49.7 bits (117), Expect = 5e-07
Identities = 31/70 (44%), Positives = 38/70 (54%), Gaps = 17/70 (24%)
Query: 4 YGNYYGGLGYGYGGFDDLGYGYGCGCGSFRRLGYGGGYGGYGYGSG-FGGYGYRSCRPSC 62
+G YGG G+G GGF G+G G G G GGG+GG+G G G FGG G
Sbjct: 90 FGGGYGGGGFGGGGFGGGGFGGG-GIG-------GGGFGGFGSGGGGFGGGG-------- 133
Query: 63 YGGYGFSGFY 72
+GG G+ G Y
Sbjct: 134 FGGGGYGGGY 143
Score = 47.4 bits (111), Expect = 2e-06
Identities = 23/45 (51%), Positives = 26/45 (57%)
Query: 9 GGLGYGYGGFDDLGYGYGCGCGSFRRLGYGGGYGGYGYGSGFGGY 53
GG G G G + G YG G GS+ G GGG+G YG GS GGY
Sbjct: 543 GGGGGGRGSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGY 587
Score = 42.4 bits (98), Expect = 8e-05
Identities = 29/73 (39%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 1 MNYYGNYYGGLGYGYGGFDDLGYGYGCGCGSFRRLGY-GGGYGGYGY-GSGFGGYGYRSC 58
+N G+ + GG G+G G G G F G+ GGG+GG G G GFGG+G
Sbjct: 68 VNLGGSKSISISVARGGGRGSGFGGGYGGGGFGGGGFGGGGFGGGGIGGGGFGGFG---- 123
Query: 59 RPSCYGGYGFSGF 71
S GG+G GF
Sbjct: 124 --SGGGGFGGGGF 134
Score = 41.2 bits (95), Expect = 2e-04
Identities = 31/70 (44%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 4 YGNYYGGLGYGYGGFD-DLGYGYGCGCGSFRRLG--YGGGYGGYGYGSGFGGYGYRSCRP 60
YG+ GG YG GG G G G G GS+ G YG G G YG G G GG+G
Sbjct: 525 YGS--GGSSYGSGGGSYGSGGGGGGGRGSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGS 582
Query: 61 SCYGGYGFSG 70
S G G SG
Sbjct: 583 SSGGYRGGSG 592
Score = 40.8 bits (94), Expect = 2e-04
Identities = 30/77 (38%), Positives = 33/77 (42%), Gaps = 18/77 (23%)
Query: 9 GGLGYGYGGFDDLGYGYGCGCGSFRRLGYGGG-------------YGGYGYGSGFGGYGY 55
G G G GG+ G YG G GS+ G GGG GG YGSG GG G+
Sbjct: 516 GSRGGGGGGYGSGGSSYGSGGGSYGSGGGGGGGRGSYGSGGSSYGSGGGSYGSGGGGGGH 575
Query: 56 RSCRPSCYGGYGFSGFY 72
S YG SG Y
Sbjct: 576 GS-----YGSGSSSGGY 587
Score = 40.4 bits (93), Expect = 3e-04
Identities = 31/69 (44%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 4 YGNYYGGLGYGYGGFDDLGYG-YGCGCGSFRRLGYGGG-YGGYGYGSGFGGYGYRSCRPS 61
YG+ GG YG GG G G YG G S+ G GGG YG G G G G YG S
Sbjct: 532 YGS--GGGSYGSGGGGGGGRGSYGSGGSSY---GSGGGSYGSGGGGGGHGSYGSGSSSGG 586
Query: 62 CYGGYGFSG 70
GG G G
Sbjct: 587 YRGGSGGGG 595
Score = 39.7 bits (91), Expect = 5e-04
Identities = 29/66 (43%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 4 YGNYYGGLGYGYGGFDDLGYGYGCGCGSFRRLGYGGGYGGYGYGSGFGGYGYRSCRPSCY 63
YG+ GG YG GG YG G G G G G GGY GSG GG G R S
Sbjct: 552 YGS--GGSSYGSGGG---SYGSGGGGGGHGSYGSGSSSGGYRGGSGGGGGGSSGGRGSGG 606
Query: 64 GGYGFS 69
G G S
Sbjct: 607 GSSGGS 612
Score = 36.2 bits (82), Expect = 0.006
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 5 GNYYGGLGYGYGGFDDLGYGYGCGCGSFRRLGYGGGYGGYGYGSGFGGYGYRSCRPSCYG 64
G++ G G+G +LG R G G G+GG G GFGG G+ G
Sbjct: 54 GSFGAGGGFGSRSLVNLGGSKSISISVARGGGRGSGFGGGYGGGGFGGGGF--------G 105
Query: 65 GYGFSG 70
G GF G
Sbjct: 106 GGGFGG 111
Score = 35.0 bits (79), Expect = 0.013
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 9/38 (23%)
Query: 5 GNYYGGLGYGYGGFDDLGYGYGCGCGSFRRLGYGGGYG 42
G +GG G G GGF G+G G GYGGGYG
Sbjct: 116 GGGFGGFGSGGGGFGGGGFGGG---------GYGGGYG 144
Score = 33.9 bits (76), Expect = 0.028
Identities = 27/66 (40%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 4 YGNYYGGLGYGYGGFDDLGYGYGCGCGSFRRLGYGGGYGGYGYGSGFGGYGYRSCRPSCY 63
YG+ G G G GG YG G G +R GG GG G SG G G S S
Sbjct: 559 YGSGGGSYGSGGGGGGHGSYGSGSSSGGYR----GGSGGGGGGSSGGRGSGGGSSGGS-I 613
Query: 64 GGYGFS 69
GG G S
Sbjct: 614 GGRGSS 619
Score = 33.1 bits (74), Expect = 0.048
Identities = 20/43 (46%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 30 GSFRRLGYGGGYG--GYGYGSGFGGYGYRSCRPSCYGGYGFSG 70
G R G GGGYG G YGSG G YG G YG G
Sbjct: 514 GGGSRGGGGGGYGSGGSSYGSGGGSYGSGGGGGGGRGSYGSGG 556
Score = 28.5 bits (62), Expect = 1.2
Identities = 27/91 (29%), Positives = 30/91 (32%), Gaps = 27/91 (29%)
Query: 7 YYGGLGYGYGGFDDLGYGYGCGCGSFRRLGYGGGY--------GGYGYGSGFG------- 51
Y G G+ G + Y S RR G GGG G +G G GFG
Sbjct: 11 YRSGGGFSSGSAGIINYQRRTTSSSTRRSGGGGGRFSSCGGGGGSFGAGGGFGSRSLVNL 70
Query: 52 ------------GYGYRSCRPSCYGGYGFSG 70
G G S YGG GF G
Sbjct: 71 GGSKSISISVARGGGRGSGFGGGYGGGGFGG 101
>gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]
Length = 589
Score = 47.4 bits (111), Expect = 2e-06
Identities = 34/71 (47%), Positives = 34/71 (47%), Gaps = 16/71 (22%)
Query: 5 GNYYGGLGYGYGGFDDLGYGYG---CGCGSFRRLGYGGGYGGY-----GYGSGFGGYGYR 56
G Y G G GYGG D G GYG G G R GYGG GGY GYG GGYG
Sbjct: 458 GGYGGDRGGGYGG--DRGGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYG-- 513
Query: 57 SCRPSCYGGYG 67
GGYG
Sbjct: 514 ----GDRGGYG 520
Score = 47.0 bits (110), Expect = 3e-06
Identities = 31/67 (46%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 5 GNYYGGLGYGYGGFDDLGYGYGCGCGSFRRLGYGGGYGGYGYGSGFGGYGYRSCRPSCYG 64
G Y G G GYGG D GYG G R GYGG GGYG GGYG S YG
Sbjct: 481 GGYGGDRGGGYGG-DRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYG 539
Query: 65 GYGFSGF 71
G G+
Sbjct: 540 GDRSGGY 546
Score = 45.1 bits (105), Expect = 1e-05
Identities = 32/69 (46%), Positives = 32/69 (46%), Gaps = 18/69 (26%)
Query: 5 GNYYGGLGYGYGGFDDLGYGYGCGCGSFRRLGYGGGYGGY------GYGSGFGGYGYRSC 58
G Y G G GYGG D G GYG G GYGG GGY GYG GGYG
Sbjct: 450 GGYGGDRGGGYGG--DRGGGYGGDRGG----GYGGDRGGYGGDRGGGYGGDRGGYG---- 499
Query: 59 RPSCYGGYG 67
GGYG
Sbjct: 500 --GDRGGYG 506
Score = 43.9 bits (102), Expect = 3e-05
Identities = 32/65 (49%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Query: 5 GNYYGGLGYGYGGFDDLGYGYGCGCGSFR--RLGYGGGYGGYGYGSGFGGYGYRSCRPSC 62
G YGG GYGG D G GYG G + R GYGG G GYG GGYG R
Sbjct: 473 GGGYGGDRGGYGG--DRGGGYGGDRGGYGGDRGGYGGDRG--GYGGDRGGYGGDRSR--- 525
Query: 63 YGGYG 67
GGYG
Sbjct: 526 -GGYG 529
Score = 39.3 bits (90), Expect = 7e-04
Identities = 30/75 (40%), Positives = 32/75 (42%), Gaps = 13/75 (17%)
Query: 4 YGNYYGGLGYGYGGFDDLGYGYGCGCGSF----RRLGYGG------GYGG---YGYGSGF 50
YG GG G GG+ GYG G + R GYGG GYGG GYG
Sbjct: 491 YGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDR 550
Query: 51 GGYGYRSCRPSCYGG 65
G GY R YGG
Sbjct: 551 SGGGYGGDRGGGYGG 565
Score = 38.9 bits (89), Expect = 9e-04
Identities = 26/51 (50%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 4 YGNYYGGLGYGYGGFDDLGYGYGCGCGSFRRLGYGGGYGGYGYGSGFGGYG 54
YG GG G GYGG GYG G GYGG GG GYG GGYG
Sbjct: 528 YGGDRGG-GSGYGGDRSGGYGGDRSGG-----GYGGDRGG-GYGGDRGGYG 571
Score = 38.5 bits (88), Expect = 0.001
Identities = 35/76 (46%), Positives = 35/76 (46%), Gaps = 18/76 (23%)
Query: 5 GNYYGG---LGYGYGGFDDLGYGYGC-----GCGSFRRLGYG----GGYG---GYGYGSG 49
G YGG G GY G D G GYG G G R GYG GGYG G GYG
Sbjct: 421 GGGYGGDRSSGGGYSG-DRSGGGYGGDRSGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGD 479
Query: 50 FGGYGYRSCRPSCYGG 65
GGYG R YGG
Sbjct: 480 RGGYG--GDRGGGYGG 493
Score = 38.1 bits (87), Expect = 0.001
Identities = 32/68 (47%), Positives = 33/68 (48%), Gaps = 16/68 (23%)
Query: 8 YGGLGYGYGGFDDLG-YGYGCGCGSFRRLGYGG----GYGGYGYGSGFG---GYGYRSCR 59
YGG GYGG G YG G GS GYGG GYGG G G+G G GY R
Sbjct: 512 YGGDRGGYGGDRSRGGYGGDRGGGS----GYGGDRSGGYGGDRSGGGYGGDRGGGYGGDR 567
Query: 60 PSCYGGYG 67
GGYG
Sbjct: 568 ----GGYG 571
Score = 37.4 bits (85), Expect = 0.003
Identities = 29/73 (39%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Query: 4 YGNYYGGLGYGYGGFDDLGYG---YGCGCGSFRRLG--YGGGYGGYGYGSGFGGYGYRSC 58
YG G G G G D GYG G G G R G Y G G GYG G GY
Sbjct: 396 YGGERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGD 455
Query: 59 RPSCYGGYGFSGF 71
R YGG G+
Sbjct: 456 RGGGYGGDRGGGY 468
Score = 34.3 bits (77), Expect = 0.022
Identities = 23/56 (41%), Positives = 23/56 (41%)
Query: 17 GFDDLGYGYGCGCGSFRRLGYGGGYGGYGYGSGFGGYGYRSCRPSCYGGYGFSGFY 72
G D G GYG G R G GG GGYG GGYG Y G G Y
Sbjct: 388 GGDFRGRGYGGERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGY 443
Score = 27.3 bits (59), Expect = 2.6
Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 8/54 (14%)
Query: 4 YGNYYGGLGYGYGGFDDLGYGYGCGCGSFRRLGYGGGYGGYGYGSGFGGYGYRS 57
YG GG G G GG+D G G G GG GG+ G YG R+
Sbjct: 174 YGGSQGG-GRGRGGYDKDGRGPMTGSS-------GGDRGGFKNFGGHRDYGPRT 219
>gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]
Length = 592
Score = 47.4 bits (111), Expect = 2e-06
Identities = 34/71 (47%), Positives = 34/71 (47%), Gaps = 16/71 (22%)
Query: 5 GNYYGGLGYGYGGFDDLGYGYG---CGCGSFRRLGYGGGYGGY-----GYGSGFGGYGYR 56
G Y G G GYGG D G GYG G G R GYGG GGY GYG GGYG
Sbjct: 461 GGYGGDRGGGYGG--DRGGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYG-- 516
Query: 57 SCRPSCYGGYG 67
GGYG
Sbjct: 517 ----GDRGGYG 523
Score = 47.0 bits (110), Expect = 3e-06
Identities = 31/67 (46%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 5 GNYYGGLGYGYGGFDDLGYGYGCGCGSFRRLGYGGGYGGYGYGSGFGGYGYRSCRPSCYG 64
G Y G G GYGG D GYG G R GYGG GGYG GGYG S YG
Sbjct: 484 GGYGGDRGGGYGG-DRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYG 542
Query: 65 GYGFSGF 71
G G+
Sbjct: 543 GDRSGGY 549
Score = 45.1 bits (105), Expect = 1e-05
Identities = 32/69 (46%), Positives = 32/69 (46%), Gaps = 18/69 (26%)
Query: 5 GNYYGGLGYGYGGFDDLGYGYGCGCGSFRRLGYGGGYGGY------GYGSGFGGYGYRSC 58
G Y G G GYGG D G GYG G GYGG GGY GYG GGYG
Sbjct: 453 GGYGGDRGGGYGG--DRGGGYGGDRGG----GYGGDRGGYGGDRGGGYGGDRGGYG---- 502
Query: 59 RPSCYGGYG 67
GGYG
Sbjct: 503 --GDRGGYG 509
Score = 43.9 bits (102), Expect = 3e-05
Identities = 32/65 (49%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Query: 5 GNYYGGLGYGYGGFDDLGYGYGCGCGSFR--RLGYGGGYGGYGYGSGFGGYGYRSCRPSC 62
G YGG GYGG D G GYG G + R GYGG G GYG GGYG R
Sbjct: 476 GGGYGGDRGGYGG--DRGGGYGGDRGGYGGDRGGYGGDRG--GYGGDRGGYGGDRSR--- 528
Query: 63 YGGYG 67
GGYG
Sbjct: 529 -GGYG 532
Score = 39.3 bits (90), Expect = 7e-04
Identities = 30/75 (40%), Positives = 32/75 (42%), Gaps = 13/75 (17%)
Query: 4 YGNYYGGLGYGYGGFDDLGYGYGCGCGSF----RRLGYGG------GYGG---YGYGSGF 50
YG GG G GG+ GYG G + R GYGG GYGG GYG
Sbjct: 494 YGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDR 553
Query: 51 GGYGYRSCRPSCYGG 65
G GY R YGG
Sbjct: 554 SGGGYGGDRGGGYGG 568
Score = 38.9 bits (89), Expect = 9e-04
Identities = 26/51 (50%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 4 YGNYYGGLGYGYGGFDDLGYGYGCGCGSFRRLGYGGGYGGYGYGSGFGGYG 54
YG GG G GYGG GYG G GYGG GG GYG GGYG
Sbjct: 531 YGGDRGG-GSGYGGDRSGGYGGDRSGG-----GYGGDRGG-GYGGDRGGYG 574
Score = 38.5 bits (88), Expect = 0.001
Identities = 35/76 (46%), Positives = 35/76 (46%), Gaps = 18/76 (23%)
Query: 5 GNYYGG---LGYGYGGFDDLGYGYGC-----GCGSFRRLGYG----GGYG---GYGYGSG 49
G YGG G GY G D G GYG G G R GYG GGYG G GYG
Sbjct: 424 GGGYGGDRSSGGGYSG-DRSGGGYGGDRSGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGD 482
Query: 50 FGGYGYRSCRPSCYGG 65
GGYG R YGG
Sbjct: 483 RGGYG--GDRGGGYGG 496
Score = 38.1 bits (87), Expect = 0.001
Identities = 32/68 (47%), Positives = 33/68 (48%), Gaps = 16/68 (23%)
Query: 8 YGGLGYGYGGFDDLG-YGYGCGCGSFRRLGYGG----GYGGYGYGSGFG---GYGYRSCR 59
YGG GYGG G YG G GS GYGG GYGG G G+G G GY R
Sbjct: 515 YGGDRGGYGGDRSRGGYGGDRGGGS----GYGGDRSGGYGGDRSGGGYGGDRGGGYGGDR 570
Query: 60 PSCYGGYG 67
GGYG
Sbjct: 571 ----GGYG 574
Score = 37.4 bits (85), Expect = 0.003
Identities = 29/73 (39%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Query: 4 YGNYYGGLGYGYGGFDDLGYG---YGCGCGSFRRLG--YGGGYGGYGYGSGFGGYGYRSC 58
YG G G G G D GYG G G G R G Y G G GYG G GY
Sbjct: 399 YGGERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGD 458
Query: 59 RPSCYGGYGFSGF 71
R YGG G+
Sbjct: 459 RGGGYGGDRGGGY 471
Score = 34.3 bits (77), Expect = 0.022
Identities = 23/56 (41%), Positives = 23/56 (41%)
Query: 17 GFDDLGYGYGCGCGSFRRLGYGGGYGGYGYGSGFGGYGYRSCRPSCYGGYGFSGFY 72
G D G GYG G R G GG GGYG GGYG Y G G Y
Sbjct: 391 GGDFRGRGYGGERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGY 446
Score = 27.3 bits (59), Expect = 2.6
Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 8/54 (14%)
Query: 4 YGNYYGGLGYGYGGFDDLGYGYGCGCGSFRRLGYGGGYGGYGYGSGFGGYGYRS 57
YG GG G G GG+D G G G GG GG+ G YG R+
Sbjct: 177 YGGSQGG-GRGRGGYDKDGRGPMTGSS-------GGDRGGFKNFGGHRDYGPRT 222
>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
sapiens]
Length = 305
Score = 47.4 bits (111), Expect = 2e-06
Identities = 24/55 (43%), Positives = 29/55 (52%)
Query: 10 GLGYGYGGFDDLGYGYGCGCGSFRRLGYGGGYGGYGYGSGFGGYGYRSCRPSCYG 64
G G GY + G G G G ++ G G YGG YG+GFGG+G S S YG
Sbjct: 212 GGGGGYNSYGGYGGGGGGGYNAYGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSYG 266
Score = 45.1 bits (105), Expect = 1e-05
Identities = 35/88 (39%), Positives = 39/88 (44%), Gaps = 22/88 (25%)
Query: 2 NYYGNYYGGLGYGYGGFDDLGYGYGCGCGSFRRLGYGGGYGGYG--------YG---SGF 50
N YG Y GG G GY YG G G S+ YG G+GG+G YG SG
Sbjct: 218 NSYGGYGGGGGGGYNA-----YGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGG 272
Query: 51 GG------YGYRSCRPSCYGGYGFSGFY 72
GG +G RS GGYG G Y
Sbjct: 273 GGGGGGSSWGGRSNSGPYRGGYGGGGGY 300
Score = 39.7 bits (91), Expect = 5e-04
Identities = 31/65 (47%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 9 GGLGYGYGGFDDLGYGYGCGCGSFRRLGYGGGYGG--YGYGSGFGGYGYRSCRPSCYGGY 66
GG G G GG D G G G G GYGGG GG YG G GG Y S YG
Sbjct: 196 GGRGRG-GGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGGSSYGG---SDYGN- 250
Query: 67 GFSGF 71
GF GF
Sbjct: 251 GFGGF 255
Score = 35.4 bits (80), Expect = 0.010
Identities = 22/58 (37%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Query: 4 YGNYYGGLGY------GYGGFDDLGYGYGCGCGSFRRLGYGGGYGGYGYGSGFGGYGY 55
YGN +GG G YG G G G G R G GGYG G G+GG +
Sbjct: 248 YGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYRGGYGGGGGYGGSSF 305
Score = 27.3 bits (59), Expect = 2.6
Identities = 18/40 (45%), Positives = 18/40 (45%), Gaps = 13/40 (32%)
Query: 39 GGYGGYGYGSG--------FGGYGYRSCRPSCYGGYGFSG 70
GG GG G G G GG GY S YGGYG G
Sbjct: 193 GGRGGRGRGGGRDQNGLSKGGGGGYNS-----YGGYGGGG 227
>gi|109452587 family with sequence similarity 98, member B isoform 1
[Homo sapiens]
Length = 433
Score = 47.4 bits (111), Expect = 2e-06
Identities = 30/67 (44%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 4 YGNYYGGLGYGYGGFDDLGYGYGCGCGSFRRLGYGGGYGGYGYGSGFGGYGYRSCRPSCY 63
+G GG G G GG G G G G G F+ G GG GGYG G+GG GY Y
Sbjct: 359 WGGGGGGWGGGGGGGGGWGGGGGGGRGGFQGRGDYGGRGGYGGRGGYGGRGY----GDPY 414
Query: 64 GGYGFSG 70
GG G G
Sbjct: 415 GGGGGGG 421
Score = 40.8 bits (94), Expect = 2e-04
Identities = 26/55 (47%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 5 GNYYGGLGYGYGGFDDLGY-----GYGCGCGSFRRLGYGGGYGGYGYGSGFGGYG 54
G + GG G G GGF G GYG G G + GYG YGG G G G GG G
Sbjct: 374 GGWGGGGGGGRGGFQGRGDYGGRGGYG-GRGGYGGRGYGDPYGGGGGGGGGGGGG 427
Score = 38.1 bits (87), Expect = 0.001
Identities = 27/64 (42%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 9 GGLGYGYGGFDDLGYGYGCGCGSFRRLGYGGGYGGYGYGSGFGGYGYRSCRPSCYGGYGF 68
GG G G G G G G G G R G+GGG GG+G G G GG G+ GG+
Sbjct: 331 GGGGRGGWGGGGGGGGRGGGGGGGGRGGWGGGGGGWG-GGGGGGGGWGGGGGGGRGGFQG 389
Query: 69 SGFY 72
G Y
Sbjct: 390 RGDY 393
Score = 37.4 bits (85), Expect = 0.003
Identities = 28/64 (43%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 9 GGLGYGYGGFDDLGYGYGCGCGSFRRLGYGGGYGGYGYGSGFGGYGYRSCRPSCYGGYGF 68
GG G G GG+ G G+G G G GGG+GG G G G GG+ R GGYG
Sbjct: 350 GGGGGGRGGWGGGGGGWGGGGGG------GGGWGGGG-GGGRGGFQGRGDYGG-RGGYGG 401
Query: 69 SGFY 72
G Y
Sbjct: 402 RGGY 405
Score = 34.7 bits (78), Expect = 0.017
Identities = 28/67 (41%), Positives = 30/67 (44%), Gaps = 11/67 (16%)
Query: 5 GNYYGGLGYGYGGFDDLGYGYGCGCGSFRRLGYGGGYGGYGYGSGFGGYGYRSCRPSCYG 64
G GG G G GG G G G G G + G GGG+GG G G G G G G
Sbjct: 332 GGGRGGWGGGGGGGGRGGGGGGGGRGGWG--GGGGGWGGGGGGGGGWGGG---------G 380
Query: 65 GYGFSGF 71
G G GF
Sbjct: 381 GGGRGGF 387
Score = 33.5 bits (75), Expect = 0.037
Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Query: 5 GNYYGGLGYG-YGGFDDLGYGYGCGCGSFRRLGYGGGYGGYGYGSGFGGY 53
G+Y G GYG GG+ GYG G G GGG GG G G G+ Y
Sbjct: 391 GDYGGRGGYGGRGGYGGRGYGDPYGGG-------GGGGGGGGGGGGYRRY 433
>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
[Homo sapiens]
Length = 372
Score = 47.0 bits (110), Expect = 3e-06
Identities = 30/68 (44%), Positives = 38/68 (55%), Gaps = 7/68 (10%)
Query: 5 GNYYGGLGYGYGGFDDLGYGYGCGCGSFR-RLGYGGGYGGYGYGSGFGGY-GYRSCRPSC 62
GN+ GG G G+GG D+ G G G+F R G+GG GG GYG GY G+ +
Sbjct: 200 GNFGGGRGGGFGGNDNFGRG-----GNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGGYG 254
Query: 63 YGGYGFSG 70
GG G+SG
Sbjct: 255 GGGPGYSG 262
Score = 46.6 bits (109), Expect = 4e-06
Identities = 31/67 (46%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 5 GNYYGGLGYGYGGFDDLGYGYGCGCGSFRRLGYGGGYGGYGY---GSGFGGYG-YRSCRP 60
G YGG G GY GF + G GYG G + G G GG GY GSG+GG G Y S
Sbjct: 234 GGGYGGSGDGYNGFGNDG-GYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNN 292
Query: 61 SCYGGYG 67
GG+G
Sbjct: 293 GGGGGFG 299
Score = 37.7 bits (86), Expect = 0.002
Identities = 30/67 (44%), Positives = 34/67 (50%), Gaps = 15/67 (22%)
Query: 2 NYYGNY--YGGLGYGYGG----FDDLGYGYG------CGCGSFRRL--GYGGGYGGYGYG 47
N +GN YGG G GY G + G GYG G GS+ G GGG+GG G G
Sbjct: 245 NGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGG-GSG 303
Query: 48 SGFGGYG 54
S FGG G
Sbjct: 304 SNFGGGG 310
Score = 37.4 bits (85), Expect = 0.003
Identities = 25/69 (36%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 5 GNYYGGLGYGYGG---FDDLGYGYGCGCGSFRRLGYGGGYGGYGYGSGFGGYGYRSCRPS 61
G YG G GYGG +D G G G G G G +GG G + FG Y +S
Sbjct: 271 GQGYGNQGSGYGGSGSYDSYNNGGGGGFGG----GSGSNFGGGGSYNDFGNYNNQSSNFG 326
Query: 62 CYGGYGFSG 70
G F G
Sbjct: 327 PMKGGNFGG 335
Score = 35.8 bits (81), Expect = 0.007
Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 16/78 (20%)
Query: 4 YGNYYGGLGYGYGGFDDLGYGYGCGCGSFRRLG------------YGGGYGGYGYGSGFG 51
Y +Y G G G+GG +G G GS+ G GG +GG G +G
Sbjct: 287 YDSYNNGGGGGFGGGSGSNFG---GGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGP-YG 342
Query: 52 GYGYRSCRPSCYGGYGFS 69
G G +P GGYG S
Sbjct: 343 GGGQYFAKPRNQGGYGGS 360
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.162 0.584
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,925,825
Number of Sequences: 37866
Number of extensions: 209680
Number of successful extensions: 3878
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 978
Number of HSP's gapped (non-prelim): 1217
length of query: 72
length of database: 18,247,518
effective HSP length: 45
effective length of query: 27
effective length of database: 16,543,548
effective search space: 446675796
effective search space used: 446675796
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.