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Search of human proteins with 31044432
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|31044432 LEM domain containing 2 isoform 1 [Homo sapiens]
(503 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|31044432 LEM domain containing 2 isoform 1 [Homo sapiens] 1014 0.0
gi|221139815 LEM domain containing 2 isoform 2 [Homo sapiens] 410 e-114
gi|7706607 LEM domain containing 3 [Homo sapiens] 192 5e-49
gi|61097912 nucleolar protein with MIF4G domain 1 [Homo sapiens] 42 0.001
gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ... 42 0.002
gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo ... 42 0.002
gi|113416879 PREDICTED: hypothetical protein [Homo sapiens] 41 0.003
gi|56676324 LEM domain containing 1 [Homo sapiens] 40 0.004
gi|239741968 PREDICTED: hypothetical protein [Homo sapiens] 39 0.011
gi|125988409 RED protein [Homo sapiens] 39 0.011
gi|239754096 PREDICTED: hypothetical protein XP_002345879 [Homo ... 39 0.014
gi|239748653 PREDICTED: hypothetical protein [Homo sapiens] 39 0.014
gi|239742678 PREDICTED: hypothetical protein XP_002342581 [Homo ... 39 0.014
gi|169169586 PREDICTED: hypothetical protein [Homo sapiens] 38 0.025
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 38 0.025
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 37 0.032
gi|194272140 dendrin [Homo sapiens] 37 0.032
gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo sapi... 37 0.042
gi|71274109 nuclear factor of kappa light polypeptide gene enhan... 37 0.055
gi|239751929 PREDICTED: hypothetical protein [Homo sapiens] 37 0.055
gi|239746415 PREDICTED: hypothetical protein XP_002344217 [Homo ... 37 0.055
gi|42475970 synapse defective 1, Rho GTPase, homolog 1 [Homo sap... 37 0.055
gi|7662162 ALEX2 protein [Homo sapiens] 37 0.055
gi|29540562 ALEX2 protein [Homo sapiens] 37 0.055
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 36 0.071
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 36 0.071
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 36 0.071
gi|239741982 PREDICTED: hypothetical protein [Homo sapiens] 36 0.071
gi|110832843 TBP-associated factor 4 [Homo sapiens] 36 0.071
gi|117938254 BCL2-associated transcription factor 1 isoform 3 [H... 36 0.071
>gi|31044432 LEM domain containing 2 isoform 1 [Homo sapiens]
Length = 503
Score = 1014 bits (2621), Expect = 0.0
Identities = 503/503 (100%), Positives = 503/503 (100%)
Query: 1 MAGLSDLELRRELQALGFQPGPITDTTRDVYRNKLRRLRGEARLRDEERLREEARPRGEE 60
MAGLSDLELRRELQALGFQPGPITDTTRDVYRNKLRRLRGEARLRDEERLREEARPRGEE
Sbjct: 1 MAGLSDLELRRELQALGFQPGPITDTTRDVYRNKLRRLRGEARLRDEERLREEARPRGEE 60
Query: 61 RLREEARLREDAPLRARPAAASPRAEPWLSQPASGSAYATPGAYGDIRPSAASWVGSRGL 120
RLREEARLREDAPLRARPAAASPRAEPWLSQPASGSAYATPGAYGDIRPSAASWVGSRGL
Sbjct: 61 RLREEARLREDAPLRARPAAASPRAEPWLSQPASGSAYATPGAYGDIRPSAASWVGSRGL 120
Query: 121 AYPARPAQLRRRASVRGSSEEDEDARTPDRATQGPGLAARRWWAASPAPARLPSSLLGPD 180
AYPARPAQLRRRASVRGSSEEDEDARTPDRATQGPGLAARRWWAASPAPARLPSSLLGPD
Sbjct: 121 AYPARPAQLRRRASVRGSSEEDEDARTPDRATQGPGLAARRWWAASPAPARLPSSLLGPD 180
Query: 181 PRPGLRATRAGPAGAARARPEVGRRLERWLSRLLLWASLGLLLVFLGILWVKMGKPSAPQ 240
PRPGLRATRAGPAGAARARPEVGRRLERWLSRLLLWASLGLLLVFLGILWVKMGKPSAPQ
Sbjct: 181 PRPGLRATRAGPAGAARARPEVGRRLERWLSRLLLWASLGLLLVFLGILWVKMGKPSAPQ 240
Query: 241 EAEDNMKLLPVDCERKTDEFCQAKQKAALLELLHELYNFLAIQAGNFECGNPENLKSKCI 300
EAEDNMKLLPVDCERKTDEFCQAKQKAALLELLHELYNFLAIQAGNFECGNPENLKSKCI
Sbjct: 241 EAEDNMKLLPVDCERKTDEFCQAKQKAALLELLHELYNFLAIQAGNFECGNPENLKSKCI 300
Query: 301 PVMEAQEYIANVTSSSSAKFEAALTWILSSNKDVGIWLKGEDQSELVTTVDKVVCLESAH 360
PVMEAQEYIANVTSSSSAKFEAALTWILSSNKDVGIWLKGEDQSELVTTVDKVVCLESAH
Sbjct: 301 PVMEAQEYIANVTSSSSAKFEAALTWILSSNKDVGIWLKGEDQSELVTTVDKVVCLESAH 360
Query: 361 PRMGVGCRLSRALLTAVTNVLIFFWCLAFLWGLLILLKYRWRKLEEEEQAMYEMVKKIID 420
PRMGVGCRLSRALLTAVTNVLIFFWCLAFLWGLLILLKYRWRKLEEEEQAMYEMVKKIID
Sbjct: 361 PRMGVGCRLSRALLTAVTNVLIFFWCLAFLWGLLILLKYRWRKLEEEEQAMYEMVKKIID 420
Query: 421 VVQDHYVDWEQDMERYPYVGILHVRDSLIPPQSRRRMKRVWDRAVEFLASNESRIQTESH 480
VVQDHYVDWEQDMERYPYVGILHVRDSLIPPQSRRRMKRVWDRAVEFLASNESRIQTESH
Sbjct: 421 VVQDHYVDWEQDMERYPYVGILHVRDSLIPPQSRRRMKRVWDRAVEFLASNESRIQTESH 480
Query: 481 RVAGEDMLVWRWTKPSSFSDSER 503
RVAGEDMLVWRWTKPSSFSDSER
Sbjct: 481 RVAGEDMLVWRWTKPSSFSDSER 503
>gi|221139815 LEM domain containing 2 isoform 2 [Homo sapiens]
Length = 201
Score = 410 bits (1053), Expect = e-114
Identities = 201/201 (100%), Positives = 201/201 (100%)
Query: 303 MEAQEYIANVTSSSSAKFEAALTWILSSNKDVGIWLKGEDQSELVTTVDKVVCLESAHPR 362
MEAQEYIANVTSSSSAKFEAALTWILSSNKDVGIWLKGEDQSELVTTVDKVVCLESAHPR
Sbjct: 1 MEAQEYIANVTSSSSAKFEAALTWILSSNKDVGIWLKGEDQSELVTTVDKVVCLESAHPR 60
Query: 363 MGVGCRLSRALLTAVTNVLIFFWCLAFLWGLLILLKYRWRKLEEEEQAMYEMVKKIIDVV 422
MGVGCRLSRALLTAVTNVLIFFWCLAFLWGLLILLKYRWRKLEEEEQAMYEMVKKIIDVV
Sbjct: 61 MGVGCRLSRALLTAVTNVLIFFWCLAFLWGLLILLKYRWRKLEEEEQAMYEMVKKIIDVV 120
Query: 423 QDHYVDWEQDMERYPYVGILHVRDSLIPPQSRRRMKRVWDRAVEFLASNESRIQTESHRV 482
QDHYVDWEQDMERYPYVGILHVRDSLIPPQSRRRMKRVWDRAVEFLASNESRIQTESHRV
Sbjct: 121 QDHYVDWEQDMERYPYVGILHVRDSLIPPQSRRRMKRVWDRAVEFLASNESRIQTESHRV 180
Query: 483 AGEDMLVWRWTKPSSFSDSER 503
AGEDMLVWRWTKPSSFSDSER
Sbjct: 181 AGEDMLVWRWTKPSSFSDSER 201
>gi|7706607 LEM domain containing 3 [Homo sapiens]
Length = 911
Score = 192 bits (489), Expect = 5e-49
Identities = 109/292 (37%), Positives = 168/292 (57%), Gaps = 8/292 (2%)
Query: 209 WLSRLLLWASLGLLLVFLGILWVKMGKPSAPQEAEDNMKLLPVDCERKTDEFCQAKQKAA 268
+LS LL A+ L + LG+ ++ M ++ E +++ + +T Q +K
Sbjct: 472 YLSMFLLTAAC-LFFLILGLTYLGMRGTGVSEDGELSIE----NPFGETFGKIQESEKTL 526
Query: 269 LLELLHELYNFLAIQAGNFECGNPENLKSKCIPVMEAQEYIANVTSSSSAKFEAALTWIL 328
++ L++L++ LA AG+ ECG+ + + V EA Y+ ++ F +L WIL
Sbjct: 527 MMNTLYKLHDRLAQLAGDHECGSSSQ---RTLSVQEAAAYLKDLGPEYEGIFNTSLQWIL 583
Query: 329 SSNKDVGIWLKGEDQSELVTTVDKVVCLESAHPRMGVGCRLSRALLTAVTNVLIFFWCLA 388
+ KDVGI G E +T + V L+S P M CR RA +T +L+ +
Sbjct: 584 ENGKDVGIRCVGFGPEEELTNITDVQFLQSTRPLMSFWCRFRRAFVTVTHRLLLLCLGVV 643
Query: 389 FLWGLLILLKYRWRKLEEEEQAMYEMVKKIIDVVQDHYVDWEQDMERYPYVGILHVRDSL 448
+ +L +KYRW K EEE + MY+MV KIIDV++ H +++ + PY+ I HVRDSL
Sbjct: 644 MVCVVLRYMKYRWTKEEEETRQMYDMVVKIIDVLRSHNEACQENKDLQPYMPIPHVRDSL 703
Query: 449 IPPQSRRRMKRVWDRAVEFLASNESRIQTESHRVAGEDMLVWRWTKPSSFSD 500
I P R++MK+VWDRAV+FLA+NESR++TE+ R+ G D LVWRW +PS+ D
Sbjct: 704 IQPHDRKKMKKVWDRAVDFLAANESRVRTETRRIGGADFLVWRWIQPSASCD 755
Score = 52.0 bits (123), Expect = 1e-06
Identities = 51/154 (33%), Positives = 71/154 (46%), Gaps = 11/154 (7%)
Query: 4 LSDLELRRELQALGFQPGPITDTTRDVYRNKLRRLRGEARLRDEERLREEARPRGEERLR 63
LSD EL +L+ G PGP+T++TR VY KL+ +LR+EE+ + + RG +
Sbjct: 12 LSDEELFSQLRRYGLSPGPVTESTRPVYLKKLK------KLREEEQQQHRSGGRGNKTRN 65
Query: 64 EEARLREDAPLRARPAAASPRAEPWLSQPASG--SAYATPGAYGDIRPSA-ASWVGSRGL 120
A + A AA+ A + +P SG S TPG I S S +G G
Sbjct: 66 SNNNNTAAATVAAAGPAAAAAAGMGV-RPVSGDLSYLRTPGGLCRISASGPESLLGGPGG 124
Query: 121 AYPARPAQLRRRASVRGSSEEDEDARTPDRATQG 154
A A PA + S E D +A D+A G
Sbjct: 125 A-SAAPAAGSKVLLGFSSDESDVEASPRDQAGGG 157
>gi|61097912 nucleolar protein with MIF4G domain 1 [Homo sapiens]
Length = 860
Score = 42.4 bits (98), Expect = 0.001
Identities = 40/126 (31%), Positives = 54/126 (42%), Gaps = 20/126 (15%)
Query: 32 RNKLRRLRGEAR-LRDEERLREEARPR------GEERLREEARLREDAPLRARPAAASPR 84
R + LR E R LR RL+ A P G E + R+D RARPA +
Sbjct: 79 RKSRKELRKEKRHLRKARRLQRTAGPEQGPGLGGRSGAEEASGHRQDTEERARPAPSRDP 138
Query: 85 AEPWLSQPASGSAYATPGAYGDIRPSAASWVGSRGLAYPARPAQLRRRASVRGSSEEDED 144
+ P +P+ A AT A RPSAA+ A R+RA + + EED +
Sbjct: 139 SPPRKPRPSRVKAKAT-AATAKTRPSAAA------------TAAARKRALLAANEEEDRE 185
Query: 145 ARTPDR 150
R +R
Sbjct: 186 IRKLER 191
>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
sapiens]
Length = 647
Score = 41.6 bits (96), Expect = 0.002
Identities = 45/160 (28%), Positives = 56/160 (35%), Gaps = 13/160 (8%)
Query: 66 ARLREDAPLRARPAAASPRAE-PWLSQPASGSAYATPGAYGDIRPSAASWVGSRGLAYPA 124
AR P AA PRA W S+ + A R A + +
Sbjct: 319 ARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASEPARVWSP 378
Query: 125 RPAQLRRRASVRGSSEEDEDARTPDRATQGPGLAAR---RWWAASPAPARLPSSLLGPDP 181
P + R R R S +E+ R P G G A W +P P + DP
Sbjct: 379 PPRRQRPRRLPRASLQEEPKRRPPCARPSGAGPAREGPAAWPGGAPTPPHARPTGRRQDP 438
Query: 182 RPGLRATRAGP------AGAARAR---PEVGRRLERWLSR 212
PG RA R GP AG+A R P G R R +R
Sbjct: 439 EPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAAR 478
>gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo
sapiens]
Length = 647
Score = 41.6 bits (96), Expect = 0.002
Identities = 45/160 (28%), Positives = 56/160 (35%), Gaps = 13/160 (8%)
Query: 66 ARLREDAPLRARPAAASPRAE-PWLSQPASGSAYATPGAYGDIRPSAASWVGSRGLAYPA 124
AR P AA PRA W S+ + A R A + +
Sbjct: 319 ARGTAPQPASTWALAARPRAGGTWTSRFEAQRGCAHQDGQRRTRDGAGNHASEPARVWSP 378
Query: 125 RPAQLRRRASVRGSSEEDEDARTPDRATQGPGLAAR---RWWAASPAPARLPSSLLGPDP 181
P + R R R S +E+ R P G G A W +P P + DP
Sbjct: 379 PPRRQRPRRLPRASLQEEPKRRPPCARPSGAGPAREGPAAWPGGAPTPPHARPTGRRQDP 438
Query: 182 RPGLRATRAGP------AGAARAR---PEVGRRLERWLSR 212
PG RA R GP AG+A R P G R R +R
Sbjct: 439 EPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAAR 478
>gi|113416879 PREDICTED: hypothetical protein [Homo sapiens]
Length = 175
Score = 40.8 bits (94), Expect = 0.003
Identities = 47/150 (31%), Positives = 56/150 (37%), Gaps = 17/150 (11%)
Query: 51 REEARPRGEERLREEARLREDAPLR----ARPAAASPRAEPWLSQPASGSAYATPGAYGD 106
R RP + L A L LR RPA P EP P +A PG+
Sbjct: 12 RARGRPHSQVSLARRAPLMFGPGLRDPPPPRPAPPRPGEEPGNRHPPPPAARTHPGSCRA 71
Query: 107 IRPSAASWVGSRGLAYPARPAQLRRRASVRGSSEEDEDARTPDRATQGPGLAARRWWAAS 166
PS A + GL P A R+RA ++ E R R G AA+
Sbjct: 72 RCPSPA----AGGLRGPWTAAPGRQRADEGAAAARPERQRVWARRLPGS--------AAA 119
Query: 167 PAPARLPSSLLGPDPRPGLRATRAGPAGAA 196
PAP R + L P P P R PAG A
Sbjct: 120 PAPGR-DALRLPPPPPPPPERPRLPPAGLA 148
>gi|56676324 LEM domain containing 1 [Homo sapiens]
Length = 108
Score = 40.4 bits (93), Expect = 0.004
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 4 LSDLELRRELQALGFQPGPITDTTRDVYRNKLRRL 38
LSD +L+ +L+ LGF PGPI +TR +Y KL +L
Sbjct: 7 LSDCKLQNQLEKLGFSPGPILPSTRKLYEKKLVQL 41
>gi|239741968 PREDICTED: hypothetical protein [Homo sapiens]
Length = 263
Score = 38.9 bits (89), Expect = 0.011
Identities = 62/187 (33%), Positives = 70/187 (37%), Gaps = 22/187 (11%)
Query: 18 FQPGPITDTTRDVYRNKLRRLRGEARLRDEERLREEARPRGEERLREEARLREDAPLRAR 77
+QP P R V K R EA LR E A P G+E R A
Sbjct: 72 YQPTP----PRSVCVRKGARKTVEA-LRPREG--SPAAPIGDEEWVLRRIWRRTGAAGAS 124
Query: 78 PAAASPRAEPWLSQPASGSAYATPGAYGDIRPSAASWVGSRGLAY------PARPAQLRR 131
PA A + AS A G G R +AAS + RGLA PA PA R
Sbjct: 125 PAGARSHPGRASRRGASDRARCARGLGGP-RVAAASELVRRGLASGAARARPASPAPARL 183
Query: 132 RASVRGSSEEDEDAR-TPDRATQGPGLAARRWWAASPAPARLPSSLLGPDPRPGLRATRA 190
G+S D R T RA P RR A P P LP+ RPG RA
Sbjct: 184 LPLAVGASAAAGDTRRTEARAEPSPSRRRRRRCCA-PLPGSLPAR------RPGCGGRRA 236
Query: 191 GPAGAAR 197
G A A +
Sbjct: 237 GGARAGQ 243
>gi|125988409 RED protein [Homo sapiens]
Length = 557
Score = 38.9 bits (89), Expect = 0.011
Identities = 40/130 (30%), Positives = 49/130 (37%), Gaps = 4/130 (3%)
Query: 24 TDTTRDVYRNKLRRLRGEARLRDEERLREEARPRGEERLREEARLREDAPLRARPAAASP 83
T T RD R + R R R RD +R RE R R ER RE R RE+ R P
Sbjct: 330 TKTPRDKERERYRE-RERDRERDRDRDRERERERDRERERERDREREEEKKR-HSYFEKP 387
Query: 84 RA--EPWLSQPASGSAYATPGAYGDIRPSAASWVGSRGLAYPARPAQLRRRASVRGSSEE 141
+ EP GS + + +A W G+ L P QL + S E
Sbjct: 388 KVDDEPMDVDKGPGSTKELIKSINEKFAGSAGWEGTESLKKPEDKKQLGDFFGMSNSYAE 447
Query: 142 DEDARTPDRA 151
A D A
Sbjct: 448 CYPATMDDMA 457
>gi|239754096 PREDICTED: hypothetical protein XP_002345879 [Homo
sapiens]
Length = 297
Score = 38.5 bits (88), Expect = 0.014
Identities = 44/148 (29%), Positives = 59/148 (39%), Gaps = 22/148 (14%)
Query: 64 EEARLREDAPLRARPAAASPRA---EPWLSQPASGSAYATPGAYGDIRPSAASWVGSRGL 120
E RLR A L+A P+ P + EPW P G+ P+ +SW GS G
Sbjct: 107 EALRLRL-AGLKASPSFKDPESRFMEPWAPLPL---------LVGEGTPAGSSWRGSPGA 156
Query: 121 AYPARPAQLRRRASVRGSSEE---DEDARTPDRATQGPGLAARRWWAASPAPARLPSSLL 177
PA++ R R S D +T +A RR SP A P ++
Sbjct: 157 RRLPLPARVAERGGARVSRRGPRWDSGPQTGGQAHAELLALERRLPEHSPLRALKPLAVG 216
Query: 178 GPDPRPGLRATRAGPAGAARARPEVGRR 205
GP R RAG G+ R +GR+
Sbjct: 217 GP------RGRRAGRLGSLRRGLRLGRQ 238
>gi|239748653 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 38.5 bits (88), Expect = 0.014
Identities = 44/148 (29%), Positives = 59/148 (39%), Gaps = 22/148 (14%)
Query: 64 EEARLREDAPLRARPAAASPRA---EPWLSQPASGSAYATPGAYGDIRPSAASWVGSRGL 120
E RLR A L+A P+ P + EPW P G+ P+ +SW GS G
Sbjct: 105 EALRLRL-AGLKASPSFKDPESRFMEPWAPLPL---------LVGEGTPAGSSWRGSPGA 154
Query: 121 AYPARPAQLRRRASVRGSSEE---DEDARTPDRATQGPGLAARRWWAASPAPARLPSSLL 177
PA++ R R S D +T +A RR SP A P ++
Sbjct: 155 RRLPLPARVAERGGARVSRRGPRWDSGPQTGGQAHAELLALERRLPEHSPLRALKPLAVG 214
Query: 178 GPDPRPGLRATRAGPAGAARARPEVGRR 205
GP R RAG G+ R +GR+
Sbjct: 215 GP------RGRRAGRLGSLRRGLRLGRQ 236
>gi|239742678 PREDICTED: hypothetical protein XP_002342581 [Homo
sapiens]
Length = 295
Score = 38.5 bits (88), Expect = 0.014
Identities = 44/148 (29%), Positives = 59/148 (39%), Gaps = 22/148 (14%)
Query: 64 EEARLREDAPLRARPAAASPRA---EPWLSQPASGSAYATPGAYGDIRPSAASWVGSRGL 120
E RLR A L+A P+ P + EPW P G+ P+ +SW GS G
Sbjct: 105 EALRLRL-AGLKASPSFKDPESRFMEPWAPLPL---------LVGEGTPAGSSWRGSPGA 154
Query: 121 AYPARPAQLRRRASVRGSSEE---DEDARTPDRATQGPGLAARRWWAASPAPARLPSSLL 177
PA++ R R S D +T +A RR SP A P ++
Sbjct: 155 RRLPLPARVAERGGARVSRRGPRWDSGPQTGGQAHAELLALERRLPEHSPLRALKPLAVG 214
Query: 178 GPDPRPGLRATRAGPAGAARARPEVGRR 205
GP R RAG G+ R +GR+
Sbjct: 215 GP------RGRRAGRLGSLRRGLRLGRQ 236
>gi|169169586 PREDICTED: hypothetical protein [Homo sapiens]
Length = 251
Score = 37.7 bits (86), Expect = 0.025
Identities = 52/166 (31%), Positives = 63/166 (37%), Gaps = 34/166 (20%)
Query: 58 GEERLREEARLREDAPLRARPA--AASPRAEPWLSQPASGSAYATPGAYGDIRPSAASWV 115
G+ R R +R AP PA A SPR +PA G A + A G + A+
Sbjct: 16 GQGRHRHSSR----APGTRTPATPARSPRPPLCAPRPAPGRAQSPVPAAGAVPSPPAA-- 69
Query: 116 GSRGLAYPARPA--------QLRRRASVRGSSEEDEDARTPDRATQGPGLAARRWWAASP 167
A+PARPA R RA+ RG + R +G G+ R
Sbjct: 70 -----AHPARPALRGETPAPGRRGRATTRGEVQPSVRPPLSHRPLRGGGMGRGR---PGK 121
Query: 168 APARLPSSLLGPDPRPGLRAT---------RAGPAGAARARPEVGR 204
P PS L P P PG R T AG AG R P V R
Sbjct: 122 GPPPNPSRRLPPAP-PGGRRTWLSALATGPAAGGAGRRRRSPPVFR 166
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 37.7 bits (86), Expect = 0.025
Identities = 42/152 (27%), Positives = 60/152 (39%), Gaps = 24/152 (15%)
Query: 47 EERLREEARPRGEERLREEARLREDAPLRARPAAASPRAEPWLSQPASGSAYATPGAYGD 106
+E+ +E+ RPR R + +R R +P RP R S+ S +P
Sbjct: 267 KEKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPR----RRHRSRSRSYSPRRRPSPRR--- 319
Query: 107 IRPSAASWVGSRGLAYPAR------PAQLRRR--ASVRGSSEEDEDART------PDRAT 152
RPS R + P R P + RRR AS+ GSS +R+ P + T
Sbjct: 320 -RPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRT 378
Query: 153 QGPGLAARRWWAASPAPAR--LPSSLLGPDPR 182
P RR ++ P R PS P P+
Sbjct: 379 SSPPRKTRRLSPSASPPRRRHRPSPPATPPPK 410
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 37.4 bits (85), Expect = 0.032
Identities = 49/196 (25%), Positives = 66/196 (33%), Gaps = 25/196 (12%)
Query: 37 RLRGEARLRDEERLREEARPRGEERLREEARLREDAPLRARPAAASPRAEPWLSQPASGS 96
R+ G A + L E A G + E A PA+ P + G
Sbjct: 45 RVLGAAGAVGRKPLAERAGGIGGATIPESAPRAGPTRTSRPPASGRGERAPPAKNTSPGP 104
Query: 97 AYATPGAYGDIRPSAASWVGSRGLAYPARPAQLR-------RRASVRGSSEEDEDARTPD 149
+ A G RP +G +GL A R +R+++ + D TP
Sbjct: 105 VSSPGRASGTTRPGP---LGQKGLRISAEETVARGKATEAPKRSALSAGARRDTSGPTP- 160
Query: 150 RATQGPGLAARRWWAASPAPARLPSSLLGPDPRPGLRATRAG-----------PAGAARA 198
T P +A R A+ LP PRP R P+ AAR
Sbjct: 161 -GTPSPAMARRS--RAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARR 217
Query: 199 RPEVGRRLERWLSRLL 214
RP G L+R SR L
Sbjct: 218 RPSAGGGLQRPASRSL 233
Score = 36.2 bits (82), Expect = 0.071
Identities = 44/142 (30%), Positives = 54/142 (38%), Gaps = 14/142 (9%)
Query: 73 PLRARPAAASPRAEPWLSQPAS--GSAYATPGAYGDIRPSAASWVGSRG-LAYPARPAQL 129
P +A PA A+P + S PAS G A +P A + P A + LA P
Sbjct: 477 PPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVPP 536
Query: 130 RRRASVRGSSEEDEDARTPDRATQGPGLAARRWWAASPAPARLPSSLL-GPD-------- 180
AS + PD + GP L P P+R PSS L GPD
Sbjct: 537 SPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSSA 596
Query: 181 --PRPGLRATRAGPAGAARARP 200
LR +GP G A A P
Sbjct: 597 TSTPEELRGYDSGPEGGAAASP 618
>gi|194272140 dendrin [Homo sapiens]
Length = 711
Score = 37.4 bits (85), Expect = 0.032
Identities = 60/190 (31%), Positives = 71/190 (37%), Gaps = 28/190 (14%)
Query: 36 RRLRGEARLRDEERLREEARPRGEERLREEARLREDAPLRARPAAASPRAEPWLSQPASG 95
RR G AR R R E PR R+ + A L APLR A RA +QP S
Sbjct: 129 RRKAGGARRSPPGRPRPE--PRNAPRVAQLAGL--PAPLRPERLAPVGRAPRPSAQPQSD 184
Query: 96 SAYATPGAYGDIRPSAASWVGSRGLAYPARPAQLRR--RASVRGSSEEDEDARTPDRATQ 153
A G +G RP S+ L A A RR R + E +
Sbjct: 185 PGSAWAGPWGGRRPGPPSYEAHLLLRGSAGTAPRRRWDRPPPYVAPPSYEGPHRTLGTKR 244
Query: 154 GPGLAARRWWAASPAPARLPSSLLGP------DPRP--------GLRATR-----AGPAG 194
GPG S APA P+ G DPR GLR + + G
Sbjct: 245 GPG---NSQVPTSSAPAATPARTDGGRTKKRLDPRIYRDVLGAWGLRQGQGLLGGSPGCG 301
Query: 195 AARARPEVGR 204
AARARPE G+
Sbjct: 302 AARARPEPGK 311
>gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo
sapiens]
Length = 437
Score = 37.0 bits (84), Expect = 0.042
Identities = 43/150 (28%), Positives = 56/150 (37%), Gaps = 19/150 (12%)
Query: 19 QPGPITDTTRDVYRNKLRRLRGEARLRDEERLR----------------EEARPRGEERL 62
+PGP RD R++ R R +R RD+ER R +E R R ER
Sbjct: 222 RPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERS 281
Query: 63 REEARLREDAPLRARPAAASPRAEPWLSQPASGSAYATPGAYGDIRP--SAASWVGSRGL 120
+++ R R+ R+R A R E G A P GD P +G G
Sbjct: 282 KDKDRDRKRRSSRSRERARRER-ERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGP 340
Query: 121 AYPARPAQLRRRASVRGSSEEDEDARTPDR 150
P + R R R E E R DR
Sbjct: 341 DGPEEKGRDRDRERRRSHRSERERRRDRDR 370
>gi|71274109 nuclear factor of kappa light polypeptide gene enhancer
in B-cells inhibitor, epsilon [Homo sapiens]
Length = 500
Score = 36.6 bits (83), Expect = 0.055
Identities = 42/126 (33%), Positives = 48/126 (38%), Gaps = 24/126 (19%)
Query: 92 PASGSAYATPGAYGDIRPSAASWVGSRGL----AYPAR----------PAQLRRRASVR- 136
P SGSA G G IR W G G A+ R PA LR +S+R
Sbjct: 31 PLSGSARRGRGGGGAIRVRRPCWSGGAGRGGGPAWAVRLPTVTAGWTWPA-LRTLSSLRA 89
Query: 137 GSSEEDEDARTPDRATQGPGLAARRWWAASPAPARLPSSLLGPDP-RPGLRATRAGPAGA 195
G SE R P R A R A P P + L PDP + G R RA
Sbjct: 90 GPSEPHSPGRRPPR-------AGRPLCQADPQPGKAARRSLEPDPAQTGPRPARAAGMSE 142
Query: 196 ARARPE 201
AR P+
Sbjct: 143 ARKGPD 148
>gi|239751929 PREDICTED: hypothetical protein [Homo sapiens]
Length = 382
Score = 36.6 bits (83), Expect = 0.055
Identities = 51/174 (29%), Positives = 64/174 (36%), Gaps = 31/174 (17%)
Query: 54 ARPRGEERLREEARLREDAPLRAR--PAAASPRAEPWLS--QPASGSAYATPGAYGDIRP 109
ARP G R R AR+ P R+ PA SP P Q +G +T G
Sbjct: 102 ARPGGGARARA-ARVSPPTPPRSGLDPAVPSPTPAPLARCRQTRAGLRLSTGGRLSPPLR 160
Query: 110 SAAS--WV-------------GSRGLAYPARPAQLRRRASVRGSSEE--------DEDAR 146
AAS W G+ G RP +LR R RG + +ED R
Sbjct: 161 RAASGEWKRPGGLTQGEFAGRGAGGARVTHRPGRLRPRGRGRGRARRTCPARRRGEEDLR 220
Query: 147 TPDRATQGP--GLAARRWWAASPAPARLPSSLLGPDPRPGLRATRAGPAGAARA 198
D Q + RR A A AR + PRPG++ G +G RA
Sbjct: 221 VQDSCPQAGCRAMGQRRVLKAEGARARARGGVCF-GPRPGMQKRSGGGSGGQRA 273
>gi|239746415 PREDICTED: hypothetical protein XP_002344217 [Homo
sapiens]
Length = 382
Score = 36.6 bits (83), Expect = 0.055
Identities = 51/174 (29%), Positives = 64/174 (36%), Gaps = 31/174 (17%)
Query: 54 ARPRGEERLREEARLREDAPLRAR--PAAASPRAEPWLS--QPASGSAYATPGAYGDIRP 109
ARP G R R AR+ P R+ PA SP P Q +G +T G
Sbjct: 102 ARPGGGARARA-ARVSPPTPPRSGLDPAVPSPTPAPLARCRQTRAGLRLSTGGRLSPPLR 160
Query: 110 SAAS--WV-------------GSRGLAYPARPAQLRRRASVRGSSEE--------DEDAR 146
AAS W G+ G RP +LR R RG + +ED R
Sbjct: 161 RAASGEWKRPGGLTQGEFAGRGAGGARVTHRPGRLRPRGRGRGRARRTCPARRRGEEDLR 220
Query: 147 TPDRATQGP--GLAARRWWAASPAPARLPSSLLGPDPRPGLRATRAGPAGAARA 198
D Q + RR A A AR + PRPG++ G +G RA
Sbjct: 221 VQDSCPQAGCRAMGQRRVLKAEGARARARGGVCF-GPRPGMQKRSGGGSGGQRA 273
>gi|42475970 synapse defective 1, Rho GTPase, homolog 1 [Homo
sapiens]
Length = 735
Score = 36.6 bits (83), Expect = 0.055
Identities = 65/212 (30%), Positives = 79/212 (37%), Gaps = 59/212 (27%)
Query: 32 RNKLRRLRGEARLRDEERLREEARPRGEERLREEARLREDAPLRARPAAASPRAEPWLSQ 91
R RLRG +L R + +A+ RG R E E P P + AE
Sbjct: 7 RKTFSRLRGREKL---PRKKSDAKERGHPAQRPEPSPPEPEP--QAPEGSQAGAEG---- 57
Query: 92 PASGSAYATP--GAY-GDIRPSAASWVGSRGLAYPARPAQLRRRASVRGSSEE------- 141
P+S A +P GAY + PS+ WV G A PA L V G+ E
Sbjct: 58 PSSPEASRSPARGAYLQSLEPSSRRWV--LGGAKPAEDTSLG--PGVPGTGEPAGEIWYN 113
Query: 142 ---DEDARTPDRATQGP--------GLAARRWWAASP----------APAR--------L 172
+ED R P GP GLA + ASP PAR L
Sbjct: 114 PIPEEDPRPPAPEPPGPQPGSAESEGLAPQGAAPASPPTKASRTKSPGPARRLSIKMKKL 173
Query: 173 PS-----SLLGPDPRPGLRATRAGPAGAARAR 199
P SL GP R G RA PAG+ +R
Sbjct: 174 PELRRRLSLRGP--RAGRERERAAPAGSVISR 203
Score = 32.3 bits (72), Expect = 1.0
Identities = 60/201 (29%), Positives = 71/201 (35%), Gaps = 50/201 (24%)
Query: 83 PRAEPWLSQPASGSA--YATPGAYGDIRPSAASWVGSRGLAYPARPA--------QLRRR 132
P EP QP S + A GA P+ AS S G PAR +LRRR
Sbjct: 123 PAPEPPGPQPGSAESEGLAPQGAAPASPPTKASRTKSPG---PARRLSIKMKKLPELRRR 179
Query: 133 ASVRGSSEEDEDARTPDRATQGPGLAARRWWAASPAPARLPSSLLGPDPRPGLRATR--- 189
S+RG R +RA + +R L SS+ GP P G TR
Sbjct: 180 LSLRGPRA----GRERERAAPAGSVISRY---------HLDSSVGGPGPAAGPGGTRSPR 226
Query: 190 -------------AGPAGAARARP-EVGRRLERWLSRLLLWASLGLLLVFLGILWVKMGK 235
AGP RP EVG LW L L L LG L +
Sbjct: 227 AGYLSDGDSPERPAGPPSPTSFRPYEVGPAAR--APPAALWGRLSLHLYGLGGL-----R 279
Query: 236 PSAPQEAEDNMKLLPVDCERK 256
P+ D LL VD E +
Sbjct: 280 PAPGATPRDLCCLLQVDGEAR 300
>gi|7662162 ALEX2 protein [Homo sapiens]
Length = 632
Score = 36.6 bits (83), Expect = 0.055
Identities = 42/166 (25%), Positives = 63/166 (37%), Gaps = 7/166 (4%)
Query: 37 RLRGEARLRDEERLREEARPRGEERLREEARLREDAPLRARPA---AASPRAEPWLSQPA 93
R E R +DE + A + A +A+ A P+AE +
Sbjct: 76 RAEAEDRAQDEASALDTVGAEAVAPAASSAEAQSGAGSQAQEADGAGVGPKAESVVGAAM 135
Query: 94 SGSAYATPGAYGDIRPSAA-SWVGSRGLAYPARPAQLRRRASVRGSSEEDEDARTPDRAT 152
+ + PG + + A + G+ +A R A+ R A G+ E A P T
Sbjct: 136 ASAIAPPPGVTEALGAAEAPAMAGAPKVAEAPREAETSRAAVPPGTVVPTE-AAAPTEVT 194
Query: 153 QGPGLAARRWWAASPAPARLPSSLLGPDPRPGLRATRAGPAGAARA 198
+GPG+AA A +P A + P P A A P GAA +
Sbjct: 195 EGPGVAAPTKVAEAPGVASPTEAAEAPVPATPTGA--AAPTGAAES 238
>gi|29540562 ALEX2 protein [Homo sapiens]
Length = 632
Score = 36.6 bits (83), Expect = 0.055
Identities = 42/166 (25%), Positives = 63/166 (37%), Gaps = 7/166 (4%)
Query: 37 RLRGEARLRDEERLREEARPRGEERLREEARLREDAPLRARPA---AASPRAEPWLSQPA 93
R E R +DE + A + A +A+ A P+AE +
Sbjct: 76 RAEAEDRAQDEASALDTVGAEAVAPAASSAEAQSGAGSQAQEADGAGVGPKAESVVGAAM 135
Query: 94 SGSAYATPGAYGDIRPSAA-SWVGSRGLAYPARPAQLRRRASVRGSSEEDEDARTPDRAT 152
+ + PG + + A + G+ +A R A+ R A G+ E A P T
Sbjct: 136 ASAIAPPPGVTEALGAAEAPAMAGAPKVAEAPREAETSRAAVPPGTVVPTE-AAAPTEVT 194
Query: 153 QGPGLAARRWWAASPAPARLPSSLLGPDPRPGLRATRAGPAGAARA 198
+GPG+AA A +P A + P P A A P GAA +
Sbjct: 195 EGPGVAAPTKVAEAPGVASPTEAAEAPVPATPTGA--AAPTGAAES 238
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 36.2 bits (82), Expect = 0.071
Identities = 39/131 (29%), Positives = 56/131 (42%), Gaps = 13/131 (9%)
Query: 67 RLREDAPLRARPAAASPRAEPWLSQPASGSAYATP--GAYGDI--RPSAASWVGSRGLAY 122
RL P PAAASP P S P + ++ P YG + P A + +R L+
Sbjct: 756 RLVRRPPPGPAPAAASPGPPPPASPPGAPASPRAPRTSPYGGLPAAPLAGPALPARRLSR 815
Query: 123 PARPAQLRRRASVRGSSEEDEDARTPDRATQ--GPGLAARRWWAASPAPAR----LPSSL 176
+RP + + G+ R +T GP AAR AA+P+P R P +
Sbjct: 816 ASRPLSASQPSLPHGAPGPAASTRPASSSTPRLGPTPAAR---AAAPSPDRRDSASPGAA 872
Query: 177 LGPDPRPGLRA 187
G DP+ R+
Sbjct: 873 GGLDPQDSARS 883
Score = 29.3 bits (64), Expect = 8.7
Identities = 45/181 (24%), Positives = 63/181 (34%), Gaps = 10/181 (5%)
Query: 52 EEARPRGEERLREEARLREDAPLRARPAAASPRAEPWLSQPASGSAYATPGAYGDIRPSA 111
+E PRG R R+ + R P A A SP E +P A G G R
Sbjct: 67 DEGGPRGRLRSRDSSCGRPGTPGAASTAKGSPNGECGRGEPQCSPA----GPEGPARGPK 122
Query: 112 ASWVGSRGLAYPARPAQLRRRASVRGSSEEDEDARTPDRATQGPGLAARRWWAASPAPAR 171
S+ RG A P + SEE A P R +Q + + P +
Sbjct: 123 VSF-SCRGAASGPAPGP---GPAEEAGSEEAGPAGEP-RGSQASFMQRQFGALLQPGVNK 177
Query: 172 LPSSLLGPDPRPGLRATRAGPAGAARARPEVGRRLERWLSRLLLWASLGLLLVFLGILWV 231
+ G R AGA P R W +LL+ L+++ +GI +
Sbjct: 178 FSLRMFGSQKAVEREQERVKSAGAWIIHPYSDFRF-YWDFTMLLFMVGNLIIIPVGITFF 236
Query: 232 K 232
K
Sbjct: 237 K 237
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 36.2 bits (82), Expect = 0.071
Identities = 44/142 (30%), Positives = 54/142 (38%), Gaps = 14/142 (9%)
Query: 73 PLRARPAAASPRAEPWLSQPAS--GSAYATPGAYGDIRPSAASWVGSRG-LAYPARPAQL 129
P +A PA A+P + S PAS G A +P A + P A + LA P
Sbjct: 516 PPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVPP 575
Query: 130 RRRASVRGSSEEDEDARTPDRATQGPGLAARRWWAASPAPARLPSSLL-GPD-------- 180
AS + PD + GP L P P+R PSS L GPD
Sbjct: 576 SPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSSA 635
Query: 181 --PRPGLRATRAGPAGAARARP 200
LR +GP G A A P
Sbjct: 636 TSTPEELRGYDSGPEGGAAASP 657
Score = 35.8 bits (81), Expect = 0.093
Identities = 41/160 (25%), Positives = 55/160 (34%), Gaps = 25/160 (15%)
Query: 73 PLRARPAAASPRAEPWLSQPASGSAYATPGAYGDIRPSAASWVGSRGLAYPARPAQLR-- 130
P PA+ P + G + A G RP +G +GL A R
Sbjct: 90 PASRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGP---LGQKGLRISAEETVARGK 146
Query: 131 -----RRASVRGSSEEDEDARTPDRATQGPGLAARRWWAASPAPARLPSSLLGPDPRPGL 185
+R+++ + D TP T P +A R A+ LP PRP
Sbjct: 147 ATEAPKRSALSAGARRDTSGPTP--GTPSPAMARRS--RAAGTEVGLPRPAPSARPRPPT 202
Query: 186 RATRAG-----------PAGAARARPEVGRRLERWLSRLL 214
R P+ AAR RP G L+R SR L
Sbjct: 203 EGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSL 242
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 36.2 bits (82), Expect = 0.071
Identities = 44/142 (30%), Positives = 54/142 (38%), Gaps = 14/142 (9%)
Query: 73 PLRARPAAASPRAEPWLSQPAS--GSAYATPGAYGDIRPSAASWVGSRG-LAYPARPAQL 129
P +A PA A+P + S PAS G A +P A + P A + LA P
Sbjct: 785 PPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVPP 844
Query: 130 RRRASVRGSSEEDEDARTPDRATQGPGLAARRWWAASPAPARLPSSLL-GPD-------- 180
AS + PD + GP L P P+R PSS L GPD
Sbjct: 845 SPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSSA 904
Query: 181 --PRPGLRATRAGPAGAARARP 200
LR +GP G A A P
Sbjct: 905 TSTPEELRGYDSGPEGGAAASP 926
Score = 35.8 bits (81), Expect = 0.093
Identities = 41/160 (25%), Positives = 55/160 (34%), Gaps = 25/160 (15%)
Query: 73 PLRARPAAASPRAEPWLSQPASGSAYATPGAYGDIRPSAASWVGSRGLAYPARPAQLR-- 130
P PA+ P + G + A G RP +G +GL A R
Sbjct: 90 PASRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGP---LGQKGLRISAEETVARGK 146
Query: 131 -----RRASVRGSSEEDEDARTPDRATQGPGLAARRWWAASPAPARLPSSLLGPDPRPGL 185
+R+++ + D TP T P +A R A+ LP PRP
Sbjct: 147 ATEAPKRSALSAGARRDTSGPTP--GTPSPAMARRS--RAAGTEVGLPRPAPSARPRPPT 202
Query: 186 RATRAG-----------PAGAARARPEVGRRLERWLSRLL 214
R P+ AAR RP G L+R SR L
Sbjct: 203 EGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSL 242
>gi|239741982 PREDICTED: hypothetical protein [Homo sapiens]
Length = 423
Score = 36.2 bits (82), Expect = 0.071
Identities = 43/144 (29%), Positives = 51/144 (35%), Gaps = 20/144 (13%)
Query: 76 ARPAAASPRAEPWLSQPASGSAYATPGAYGDIRPSAASWVGSRGLAYPARPAQLRRRASV 135
A PA A P L P SG+ AT P G+RGL RP QL
Sbjct: 221 AHPAGAITLDGPVLDAP-SGAEAATLAGVRLPPPPGCGGSGARGL----RPEQL------ 269
Query: 136 RGSSEEDEDARTPDRATQGPGLAARRWWAASPAPARLPSSLLGPDPRPGLRATRAGPAGA 195
S + P R G A R + +P PA +P++ G D R G R R
Sbjct: 270 -WSHVQHARCPQPGRGPDASGAAGR---SRAPPPAAVPAAWEGTDRRRGRRRRRPSWRNG 325
Query: 196 ARARPEVGRRLERWLSRLLLWASL 219
E G WL L SL
Sbjct: 326 TEGSTEAG-----WLGTATLACSL 344
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 36.2 bits (82), Expect = 0.071
Identities = 41/135 (30%), Positives = 51/135 (37%), Gaps = 18/135 (13%)
Query: 77 RPAAASPRAEPWLSQPASGSAYATPGAYGDIRPSAASWVGSRGLAYPAR-------PAQL 129
R AAA +S +G+A A P A + P AA G A P P
Sbjct: 51 RAAAAGALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSP 110
Query: 130 RRRASVRGSSEEDEDARTPDRATQGPGLAARRWWAASPAPARLPSSLLGPDPRPGLRATR 189
RR G + R P + G + +P PA + GP+P P A
Sbjct: 111 RRPLVPAGPAPPAAKLRPPPEGSAG---------SCAPVPAAAAVAA-GPEPAPAGPAKP 160
Query: 190 AGPAG-AARARPEVG 203
AGPA AARA P G
Sbjct: 161 AGPAALAARAGPGPG 175
Score = 33.1 bits (74), Expect = 0.61
Identities = 40/132 (30%), Positives = 47/132 (35%), Gaps = 20/132 (15%)
Query: 78 PAAASPRAEPWLSQPASGSAYATP---GAYGDIRPSAASWVGSRGLAYPAR--------P 126
PAA P +P A G+ TP GA P+A S + A PA P
Sbjct: 222 PAALLPLPKP----AAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAP 277
Query: 127 AQLRRRASVRGSSEEDEDARTPDRATQGPGLAARRWWAASPAPARLPSSLLGPDPRPGLR 186
A L R A P A Q G A A+PAPA G +PG
Sbjct: 278 ATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAG-----AAPAPAPAAGGPAGVSGQPGPG 332
Query: 187 ATRAGPAGAARA 198
A A PA +A
Sbjct: 333 AAAAAPAPGVKA 344
Score = 32.3 bits (72), Expect = 1.0
Identities = 45/152 (29%), Positives = 53/152 (34%), Gaps = 32/152 (21%)
Query: 76 ARPAAASPRAEPWLSQPASGSAYATPG-------AYGDIRPSAASWVGSRGLAYPARPAQ 128
A PA A+P A P PA + PG A + P AA+ G A PA
Sbjct: 259 AAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPA 318
Query: 129 LRRRASVRG---------SSEEDEDARTPDRATQGPGLAARRWWAASPA----------- 168
A V G + A +P R Q AA+ A+ PA
Sbjct: 319 AGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPASTAASMVIGPT 378
Query: 169 -PARLPSSLLGPDPRPGLRATRAG-PAGAARA 198
LPS P P PG T G P GAA A
Sbjct: 379 MQGALPSPAAVPPPAPG---TPTGLPKGAAGA 407
>gi|117938254 BCL2-associated transcription factor 1 isoform 3 [Homo
sapiens]
Length = 747
Score = 36.2 bits (82), Expect = 0.071
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 10/130 (7%)
Query: 38 LRGEARLRDEERLREEARPRGEERLR-EEARLREDAPLRARPAAASPRAEPWLSQPASGS 96
LR RL EER+ +E +G+++LR + A LR D R R + R + S+ +SGS
Sbjct: 489 LRKHTRLAGEERVFKEENQKGDKKLRCDSADLRHDID-RRRKERSKERGDSKGSRESSGS 547
Query: 97 A--------YATPGAYGDIRPSAASWVGSRGLAYPARPAQLRRRASVRGSSEEDEDARTP 148
Y +Y D SR + A P+ R E +E+ +T
Sbjct: 548 RKQEKTPKDYKEYKSYKDDSKHKREQDHSRSSSSSASPSSPSSREEKESKKEREEEFKTH 607
Query: 149 DRATQGPGLA 158
+ G A
Sbjct: 608 HEMKEYSGFA 617
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,195,246
Number of Sequences: 37866
Number of extensions: 1080155
Number of successful extensions: 6557
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 342
Number of HSP's that attempted gapping in prelim test: 6036
Number of HSP's gapped (non-prelim): 802
length of query: 503
length of database: 18,247,518
effective HSP length: 107
effective length of query: 396
effective length of database: 14,195,856
effective search space: 5621558976
effective search space used: 5621558976
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.