Guide to the Human Genome
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Name: LOC100130503 Sequence: fasta or formatted (423aa) NCBI GI: 239741982
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {423aa} PREDICTED: hypothetical protein
alt prot {423aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.5         53           3
 C cysteine            2.6         11           1
 D aspartate           4.0         17           1
 E glutamate           5.2         22           2
 F phenylalanine       0.7          3           2
 G glycine            13.2         56           3
 H histidine           3.1         13           1
 I isoleucine          2.1          9           1
 K lysine              2.4         10           1
 L leucine             9.5         40           3
 M methionine          0.5          2           1
 N asparagine          1.9          8           1
 P proline             7.1         30           4
 Q glutamine           2.8         12           1
 R arginine           11.6         49           5
 S serine              7.6         32           1
 T threonine           5.2         22           2
 V valine              4.5         19           1
 W tryptophan          2.4         10           1
 Y tyrosine            1.2          5           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100130503          0.993   PREDICTED: hypothetical protein 
LOC100130503          0.989   PREDICTED: hypothetical protein 
LOC645321             0.025   PREDICTED: hypothetical protein 
LOC645321             0.025   PREDICTED: hypothetical protein 
LOC100293055          0.024   PREDICTED: similar to COL22A1 protein 
LOC100293375          0.022   PREDICTED: hypothetical protein 
TAF4                  0.022   TBP-associated factor 4 
LOC100290812          0.021   PREDICTED: hypothetical protein XP_002347678 
LOC100288205          0.021   PREDICTED: hypothetical protein XP_002343496 
LOC100293975          0.020   PREDICTED: hypothetical protein 
COL22A1               0.020   collagen, type XXII, alpha 1 
AGAP2                 0.018   centaurin, gamma 1 isoform PIKE-L 
LOC123855             0.016   PREDICTED: similar to hCG2042536 
LOC123855             0.016   PREDICTED: similar to hCG2042536 
ARID1B                0.016   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.016   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.016   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
LOC100290372          0.016   PREDICTED: hypothetical protein XP_002346788 
LOC100288606          0.016   PREDICTED: hypothetical protein XP_002342652 
ELN                   0.016   elastin isoform d precursor 
ELN                   0.016   elastin isoform c precursor 
ELN                   0.016   elastin isoform b precursor 
SAMD1                 0.016   sterile alpha motif domain containing 1 
LOC400236             0.015   PREDICTED: hypothetical protein 
LOC400236             0.015   PREDICTED: hypothetical protein 
LOC100133305          0.015   PREDICTED: hypothetical protein 
LOC100133305          0.015   PREDICTED: hypothetical protein 
COL19A1               0.015   alpha 1 type XIX collagen precursor 
NINL                  0.015   ninein-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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