LEMD1 33142

Name: LEMD1	Sequence: fasta or formatted (108aa)		NCBI GI: 56676324
Description: LEM domain containing 1		Referenced in: Additional Interaction Domain Families
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.6 6 1 C cysteine 2.8 3 1 D aspartate 5.6 6 2 E glutamate 7.4 8 1 F phenylalanine 0.9 1 1 G glycine 7.4 8 2 H histidine 1.9 2 1 I isoleucine 0.9 1 1 K lysine 9.3 10 2 L leucine 12.0 13 2 M methionine 2.8 3 1 N asparagine 1.9 2 1 P proline 9.3 10 2 Q glutamine 6.5 7 1 R arginine 5.6 6 1 S serine 9.3 10 1 T threonine 3.7 4 2 V valine 5.6 6 1 W tryptophan 0.9 1 1 Y tyrosine 0.9 1 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 LEM domain containing 1 TMPO 0.121 thymopoietin isoform alpha TMPO 0.096 thymopoietin isoform gamma TMPO 0.096 thymopoietin isoform beta LEMD2 0.076 LEM domain containing 2 isoform 1 LEMD3 0.071 LEM domain containing 3 ANKLE1 0.061 ankyrin repeat domain 41 EMD 0.051 emerin ANKLE2 0.040 ankyrin repeat and LEM domain containing 2 PPHLN1 0.040 periphilin 1 isoform 1 LOC100292296 0.035 PREDICTED: hypothetical protein LOC100290476 0.035 PREDICTED: hypothetical protein XP_002347412 SYN3 0.025 synapsin III isoform IIIg SYN3 0.025 synapsin III isoform IIIa IKZF2 0.025 helios isoform 1 IKZF2 0.025 helios isoform 2 CPEB3 0.020 cytoplasmic polyadenylation element binding protein ... LOC100292736 0.020 PREDICTED: similar to hCG1996962 DIDO1 0.020 death inducer-obliterator 1 isoform c DIDO1 0.020 death inducer-obliterator 1 isoform b DIDO1 0.020 death inducer-obliterator 1 isoform a DIDO1 0.020 death inducer-obliterator 1 isoform a COL16A1 0.020 alpha 1 type XVI collagen precursor LOC100290104 0.015 PREDICTED: hypothetical protein XP_002347921 LOC100287572 0.015 PREDICTED: hypothetical protein XP_002343657 CHMP7 0.015 CHMP family, member 7 C10orf47 0.015 hypothetical protein LOC254427 DVL2 0.015 dishevelled 2 CMTM2 0.015 chemokine-like factor superfamily 2 GGN 0.015 gametogenetin Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.