Guide to the Human Genome
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Name: CHRD Sequence: fasta or formatted (955aa) NCBI GI: 30089980
Description:

chordin

Referenced in:

Additional Genes in Development
Stem Cells and Early Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         82           2
 C cysteine            5.0         48           2
 D aspartate           3.8         36           2
 E glutamate           5.7         54           2
 F phenylalanine       2.2         21           2
 G glycine            10.9        104           2
 H histidine           3.4         32           1
 I isoleucine          1.9         18           1
 K lysine              2.1         20           1
 L leucine            11.5        110           4
 M methionine          1.2         11           1
 N asparagine          1.2         11           1
 P proline            10.5        100           3
 Q glutamine           4.7         45           2
 R arginine            8.0         76           2
 S serine              6.1         58           3
 T threonine           4.7         45           2
 V valine              6.5         62           2
 W tryptophan          1.3         12           1
 Y tyrosine            1.0         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chordin 
CHRDL2                0.041   chordin-like 2 
FRAS1                 0.041   Fraser syndrome 1 
KCP                   0.036   cysteine rich BMP regulator 2 isoform 1 
KCP                   0.036   cysteine rich BMP regulator 2 isoform 2 
VWCE                  0.031   von Willebrand factor C and EGF domains 
CRIM1                 0.030   cysteine-rich motor neuron 1 
CHRDL1                0.027   chordin-like 1 isoform 4 precursor 
CHRDL1                0.025   chordin-like 1 isoform 1 precursor 
BMPER                 0.025   BMP-binding endothelial regulator precursor protein ...
CHRDL1                0.025   chordin-like 1 isoform 3 precursor 
CHRDL1                0.025   chordin-like 1 isoform 2 precursor 
NELL1                 0.016   nel-like 1 isoform 2 precursor 
NELL1                 0.016   nel-like 1 isoform 1 precursor 
THBS2                 0.016   thrombospondin 2 precursor 
NELL2                 0.015   NEL-like protein 2 isoform d 
NELL2                 0.015   NEL-like protein 2 isoform c 
NELL2                 0.015   NEL-like protein 2 isoform b precursor 
NELL2                 0.015   NEL-like protein 2 isoform a 
NELL2                 0.015   NEL-like protein 2 isoform b precursor 
ECM2                  0.015   extracellular matrix protein 2 precursor 
PXDN                  0.013   peroxidasin 
VWC2                  0.013   von Willebrand factor C domain containing 2 
VWF                   0.012   von Willebrand factor preproprotein 
COL1A1                0.011   alpha 1 type I collagen preproprotein 
COL2A1                0.011   collagen, type II, alpha 1 isoform 1 precursor [Hom...
PXDNL                 0.011   peroxidasin homolog-like 
COL3A1                0.011   collagen type III alpha 1 preproprotein 
COL5A2                0.010   alpha 2 type V collagen preproprotein 
VWC2L                 0.010   von Willebrand factor C domain-containing protein 2...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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