Guide to the Human Genome
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Name: VWC2L Sequence: fasta or formatted (222aa) NCBI GI: 122937446
Description:

von Willebrand factor C domain-containing protein 2-like

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         11           2
 C cysteine           12.2         27           2
 D aspartate           5.9         13           2
 E glutamate           9.0         20           2
 F phenylalanine       3.2          7           2
 G glycine             6.8         15           1
 H histidine           4.5         10           1
 I isoleucine          5.4         12           2
 K lysine              6.8         15           1
 L leucine             4.1          9           3
 M methionine          0.5          1           1
 N asparagine          5.4         12           1
 P proline             8.6         19           1
 Q glutamine           2.7          6           1
 R arginine            1.8          4           1
 S serine              4.1          9           2
 T threonine           2.3          5           2
 V valine              8.1         18           2
 W tryptophan          1.4          3           2
 Y tyrosine            2.7          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   von Willebrand factor C domain-containing protein 2... 
VWC2                  0.493   von Willebrand factor C domain containing 2 
KCP                   0.112   cysteine rich BMP regulator 2 isoform 2 
KCP                   0.096   cysteine rich BMP regulator 2 isoform 1 
VWCE                  0.094   von Willebrand factor C and EGF domains 
CHRDL1                0.091   chordin-like 1 isoform 3 precursor 
CHRDL1                0.091   chordin-like 1 isoform 2 precursor 
CHRDL1                0.091   chordin-like 1 isoform 1 precursor 
FRAS1                 0.087   Fraser syndrome 1 
CHRDL2                0.071   chordin-like 2 
CRIM1                 0.067   cysteine-rich motor neuron 1 
BMPER                 0.060   BMP-binding endothelial regulator precursor protein ...
COL5A2                0.052   alpha 2 type V collagen preproprotein 
NELL2                 0.046   NEL-like protein 2 isoform d 
NELL2                 0.046   NEL-like protein 2 isoform c 
NELL2                 0.046   NEL-like protein 2 isoform b precursor 
NELL2                 0.046   NEL-like protein 2 isoform a 
NELL2                 0.046   NEL-like protein 2 isoform b precursor 
CHRD                  0.042   chordin 
COL3A1                0.042   collagen type III alpha 1 preproprotein 
CHRDL1                0.040   chordin-like 1 isoform 4 precursor 
LOC100131696          0.035   PREDICTED: keratin associated protein 
LOC100288060          0.035   PREDICTED: hypothetical protein XP_002343557 
LOC100131696          0.035   PREDICTED: keratin associated protein 
MUC19                 0.035   PREDICTED: mucin 19, oligomeric 
MUC19                 0.035   PREDICTED: mucin 19, oligomeric 
MUC19                 0.035   PREDICTED: mucin 19 
NOTCH1                0.033   notch1 preproprotein 
PXDN                  0.033   peroxidasin 
KRTAP10-6             0.033   keratin associated protein 10-6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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