Guide to the Human Genome
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Name: CHRDL1 Sequence: fasta or formatted (458aa) NCBI GI: 221316561
Description:

chordin-like 1 isoform 1 precursor

Referenced in:

Additional Genes in Development

Other entries for this name:
alt prot [457aa] chordin-like 1 isoform 2 precursor
alt prot [377aa] chordin-like 1 isoform 4 precursor
alt prot [456aa] chordin-like 1 isoform 3 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.6         12           1
 C cysteine            7.4         34           2
 D aspartate           2.6         12           1
 E glutamate           7.9         36           2
 F phenylalanine       3.7         17           2
 G glycine             7.2         33           2
 H histidine           4.6         21           1
 I isoleucine          3.7         17           1
 K lysine              7.4         34           2
 L leucine             6.6         30           3
 M methionine          2.0          9           1
 N asparagine          3.9         18           2
 P proline             6.1         28           3
 Q glutamine           4.6         21           2
 R arginine            5.9         27           1
 S serine              7.0         32           2
 T threonine           4.8         22           2
 V valine              7.0         32           1
 W tryptophan          1.3          6           1
 Y tyrosine            3.7         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chordin-like 1 isoform 1 precursor 
CHRDL1                0.993   chordin-like 1 isoform 2 precursor 
CHRDL1                0.987   chordin-like 1 isoform 3 precursor 
CHRDL1                0.620   chordin-like 1 isoform 4 precursor 
CHRDL2                0.293   chordin-like 2 
KCP                   0.081   cysteine rich BMP regulator 2 isoform 2 
KCP                   0.079   cysteine rich BMP regulator 2 isoform 1 
CRIM1                 0.074   cysteine-rich motor neuron 1 
BMPER                 0.072   BMP-binding endothelial regulator precursor protein ...
VWCE                  0.054   von Willebrand factor C and EGF domains 
VWC2                  0.053   von Willebrand factor C domain containing 2 
CHRD                  0.051   chordin 
FRAS1                 0.047   Fraser syndrome 1 
VWC2L                 0.045   von Willebrand factor C domain-containing protein 2...
NELL1                 0.036   nel-like 1 isoform 2 precursor 
NELL1                 0.036   nel-like 1 isoform 1 precursor 
NELL2                 0.035   NEL-like protein 2 isoform d 
NELL2                 0.035   NEL-like protein 2 isoform c 
NELL2                 0.035   NEL-like protein 2 isoform b precursor 
NELL2                 0.035   NEL-like protein 2 isoform a 
NELL2                 0.035   NEL-like protein 2 isoform b precursor 
PXDN                  0.030   peroxidasin 
PXDNL                 0.022   peroxidasin homolog-like 
THBS2                 0.021   thrombospondin 2 precursor 
ECM2                  0.021   extracellular matrix protein 2 precursor 
COL1A1                0.020   alpha 1 type I collagen preproprotein 
COL2A1                0.020   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL5A2                0.020   alpha 2 type V collagen preproprotein 
THBS1                 0.020   thrombospondin 1 precursor 
CYR61                 0.018   cysteine-rich, angiogenic inducer, 61 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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