Guide to the Human Genome
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Name: VWC2 Sequence: fasta or formatted (325aa) NCBI GI: 38348414
Description:

von Willebrand factor C domain containing 2

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         30           4
 C cysteine            8.9         29           2
 D aspartate           3.7         12           1
 E glutamate          10.2         33           2
 F phenylalanine       1.5          5           1
 G glycine             8.6         28           3
 H histidine           1.5          5           1
 I isoleucine          2.5          8           1
 K lysine              4.3         14           1
 L leucine             5.5         18           2
 M methionine          1.5          5           1
 N asparagine          1.5          5           1
 P proline             9.5         31           2
 Q glutamine           4.9         16           1
 R arginine            6.8         22           1
 S serine              5.2         17           3
 T threonine           5.2         17           1
 V valine              5.5         18           2
 W tryptophan          1.2          4           1
 Y tyrosine            2.5          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   von Willebrand factor C domain containing 2 
VWC2L                 0.349   von Willebrand factor C domain-containing protein 2...
KCP                   0.088   cysteine rich BMP regulator 2 isoform 2 
CRIM1                 0.080   cysteine-rich motor neuron 1 
VWCE                  0.080   von Willebrand factor C and EGF domains 
KCP                   0.077   cysteine rich BMP regulator 2 isoform 1 
CHRDL1                0.075   chordin-like 1 isoform 3 precursor 
CHRDL1                0.075   chordin-like 1 isoform 2 precursor 
CHRDL1                0.075   chordin-like 1 isoform 1 precursor 
FRAS1                 0.066   Fraser syndrome 1 
CHRDL2                0.054   chordin-like 2 
BMPER                 0.054   BMP-binding endothelial regulator precursor protein ...
CHRDL1                0.052   chordin-like 1 isoform 4 precursor 
NELL2                 0.047   NEL-like protein 2 isoform d 
NELL2                 0.047   NEL-like protein 2 isoform c 
NELL2                 0.047   NEL-like protein 2 isoform b precursor 
NELL2                 0.047   NEL-like protein 2 isoform a 
NELL2                 0.047   NEL-like protein 2 isoform b precursor 
NELL1                 0.040   nel-like 1 isoform 2 precursor 
NELL1                 0.040   nel-like 1 isoform 1 precursor 
COL5A2                0.040   alpha 2 type V collagen preproprotein 
CHRD                  0.038   chordin 
FBLN2                 0.034   fibulin 2 isoform b precursor 
FBLN2                 0.034   fibulin 2 isoform a precursor 
PXDN                  0.032   peroxidasin 
PXDNL                 0.032   peroxidasin homolog-like 
MUC5AC                0.029   mucin 5AC 
MUC5B                 0.029   mucin 5, subtype B, tracheobronchial 
ECM2                  0.029   extracellular matrix protein 2 precursor 
THBS1                 0.028   thrombospondin 1 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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