Guide to the Human Genome
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Name: CHRDL1 Sequence: fasta or formatted (377aa) NCBI GI: 221316568
Description:

chordin-like 1 isoform 4 precursor

Referenced in:

Additional Genes in Development

Other entries for this name:
alt prot [458aa] chordin-like 1 isoform 1 precursor
alt prot [457aa] chordin-like 1 isoform 2 precursor
alt prot [456aa] chordin-like 1 isoform 3 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.7         10           1
 C cysteine            6.4         24           2
 D aspartate           2.7         10           1
 E glutamate           8.0         30           2
 F phenylalanine       3.7         14           2
 G glycine             7.4         28           2
 H histidine           5.3         20           1
 I isoleucine          4.5         17           1
 K lysine              8.0         30           2
 L leucine             6.6         25           3
 M methionine          2.4          9           1
 N asparagine          3.2         12           2
 P proline             5.8         22           3
 Q glutamine           4.2         16           2
 R arginine            6.4         24           1
 S serine              6.6         25           2
 T threonine           4.2         16           2
 V valine              6.6         25           1
 W tryptophan          1.6          6           1
 Y tyrosine            3.7         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chordin-like 1 isoform 4 precursor 
CHRDL1                0.765   chordin-like 1 isoform 3 precursor 
CHRDL1                0.759   chordin-like 1 isoform 2 precursor 
CHRDL1                0.759   chordin-like 1 isoform 1 precursor 
CHRDL2                0.167   chordin-like 2 
CHRD                  0.067   chordin 
KCP                   0.057   cysteine rich BMP regulator 2 isoform 1 
KCP                   0.056   cysteine rich BMP regulator 2 isoform 2 
VWC2                  0.044   von Willebrand factor C domain containing 2 
CRIM1                 0.043   cysteine-rich motor neuron 1 
BMPER                 0.043   BMP-binding endothelial regulator precursor protein ...
VWCE                  0.038   von Willebrand factor C and EGF domains 
COL5A2                0.024   alpha 2 type V collagen preproprotein 
COL1A1                0.024   alpha 1 type I collagen preproprotein 
VWC2L                 0.024   von Willebrand factor C domain-containing protein 2...
THBS1                 0.024   thrombospondin 1 precursor 
COL2A1                0.024   collagen, type II, alpha 1 isoform 1 precursor [Hom...
THBS2                 0.024   thrombospondin 2 precursor 
NELL2                 0.024   NEL-like protein 2 isoform d 
NELL2                 0.024   NEL-like protein 2 isoform c 
NELL2                 0.024   NEL-like protein 2 isoform b precursor 
NELL2                 0.024   NEL-like protein 2 isoform a 
NELL2                 0.024   NEL-like protein 2 isoform b precursor 
NELL1                 0.023   nel-like 1 isoform 2 precursor 
NELL1                 0.023   nel-like 1 isoform 1 precursor 
FRAS1                 0.023   Fraser syndrome 1 
PXDN                  0.019   peroxidasin 
PXDNL                 0.018   peroxidasin homolog-like 
COL3A1                0.016   collagen type III alpha 1 preproprotein 
BRAP                  0.013   BRCA1 associated protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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