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Search of human proteins with 29570788
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|29570788 CSRP2 binding protein isoform b [Homo sapiens]
(654 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|29570788 CSRP2 binding protein isoform b [Homo sapiens] 1332 0.0
gi|24308203 CSRP2 binding protein isoform a [Homo sapiens] 1332 0.0
gi|14790190 spen homolog, transcriptional regulator [Homo sapiens] 43 8e-04
gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens] 41 0.004
gi|13376735 N-acetyltransferase 13 [Homo sapiens] 40 0.007
gi|119943102 CREB binding protein isoform b [Homo sapiens] 39 0.012
gi|119943104 CREB binding protein isoform a [Homo sapiens] 39 0.012
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 39 0.015
gi|126362967 Nck-associated protein 5 isoform 1 [Homo sapiens] 39 0.020
gi|189011568 adenomatous polyposis coli [Homo sapiens] 38 0.026
gi|189011566 adenomatous polyposis coli [Homo sapiens] 38 0.026
gi|53759122 adenomatous polyposis coli [Homo sapiens] 38 0.026
gi|95147555 microtubule-associated protein 1A [Homo sapiens] 38 0.026
gi|38158015 mastermind-like 3 [Homo sapiens] 37 0.057
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 37 0.075
gi|225735631 mesoderm induction early response 1 isoform g [Homo... 36 0.098
gi|225735615 mesoderm induction early response 1 isoform a [Homo... 36 0.098
gi|118130872 mesoderm induction early response 1 isoform f [Homo... 36 0.098
gi|225735612 mesoderm induction early response 1 isoform e [Homo... 36 0.098
gi|225735610 mesoderm induction early response 1 isoform d [Homo... 36 0.098
gi|118130815 mesoderm induction early response 1 isoform c [Homo... 36 0.098
gi|225735607 mesoderm induction early response 1 isoform b [Homo... 36 0.098
gi|225735605 mesoderm induction early response 1 isoform a [Homo... 36 0.098
gi|55956788 nucleolin [Homo sapiens] 36 0.13
gi|55953110 retinoblastoma protein-binding zinc finger protein i... 36 0.13
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 36 0.13
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 36 0.13
gi|118498359 ribosomal L1 domain containing 1 [Homo sapiens] 35 0.17
gi|7662310 FERM, RhoGEF and pleckstrin domain protein 2 [Homo sa... 35 0.17
gi|11415052 retinoid X receptor, beta [Homo sapiens] 35 0.22
>gi|29570788 CSRP2 binding protein isoform b [Homo sapiens]
Length = 654
Score = 1332 bits (3446), Expect = 0.0
Identities = 654/654 (100%), Positives = 654/654 (100%)
Query: 1 MLAMYNLSLEGSGRQGYFRWKEDICAFIEKHWTFLLGNRKKTSTWWSTVAGCLSVGSPMY 60
MLAMYNLSLEGSGRQGYFRWKEDICAFIEKHWTFLLGNRKKTSTWWSTVAGCLSVGSPMY
Sbjct: 1 MLAMYNLSLEGSGRQGYFRWKEDICAFIEKHWTFLLGNRKKTSTWWSTVAGCLSVGSPMY 60
Query: 61 FRSGAQEFGEPGWWKLVHNKPPTMKPEGEKLSASTLKIKAASKPTLDPIITVEGLRKRAS 120
FRSGAQEFGEPGWWKLVHNKPPTMKPEGEKLSASTLKIKAASKPTLDPIITVEGLRKRAS
Sbjct: 61 FRSGAQEFGEPGWWKLVHNKPPTMKPEGEKLSASTLKIKAASKPTLDPIITVEGLRKRAS 120
Query: 121 RNPVESAMELKEKRSRTQEAKDIRRAQKEAAGFLDRSTSSTPVKFISRGRRPDVILEKGE 180
RNPVESAMELKEKRSRTQEAKDIRRAQKEAAGFLDRSTSSTPVKFISRGRRPDVILEKGE
Sbjct: 121 RNPVESAMELKEKRSRTQEAKDIRRAQKEAAGFLDRSTSSTPVKFISRGRRPDVILEKGE 180
Query: 181 VIDFSSLSSSDRTPLTSPSPSPSLDFSAPGTPASHSATPSLLSEADLIPDVMPPQALFHD 240
VIDFSSLSSSDRTPLTSPSPSPSLDFSAPGTPASHSATPSLLSEADLIPDVMPPQALFHD
Sbjct: 181 VIDFSSLSSSDRTPLTSPSPSPSLDFSAPGTPASHSATPSLLSEADLIPDVMPPQALFHD 240
Query: 241 DDEMEGDGVIDPGMEYVPPPAGSVASGPVVGGRKKVRGPEQIKQEVESEEEKPDRMDIDS 300
DDEMEGDGVIDPGMEYVPPPAGSVASGPVVGGRKKVRGPEQIKQEVESEEEKPDRMDIDS
Sbjct: 241 DDEMEGDGVIDPGMEYVPPPAGSVASGPVVGGRKKVRGPEQIKQEVESEEEKPDRMDIDS 300
Query: 301 EDTDSNTSLQTRAREKRKPQLEKDTKPKEPRYTPVSIYEEKLLLKRLEACPGAVAMTPEA 360
EDTDSNTSLQTRAREKRKPQLEKDTKPKEPRYTPVSIYEEKLLLKRLEACPGAVAMTPEA
Sbjct: 301 EDTDSNTSLQTRAREKRKPQLEKDTKPKEPRYTPVSIYEEKLLLKRLEACPGAVAMTPEA 360
Query: 361 RRLKRKLIVRQAKRDRGLPLFDLDQVVNAALLLVDGIYGAKEGGISRLPAGQATYRTTCQ 420
RRLKRKLIVRQAKRDRGLPLFDLDQVVNAALLLVDGIYGAKEGGISRLPAGQATYRTTCQ
Sbjct: 361 RRLKRKLIVRQAKRDRGLPLFDLDQVVNAALLLVDGIYGAKEGGISRLPAGQATYRTTCQ 420
Query: 421 DFRILDRYQTSLPSRKGFRHQTTKFLYRLVGSEDMAVDQSIVSPYTSRILKPYIRRDYET 480
DFRILDRYQTSLPSRKGFRHQTTKFLYRLVGSEDMAVDQSIVSPYTSRILKPYIRRDYET
Sbjct: 421 DFRILDRYQTSLPSRKGFRHQTTKFLYRLVGSEDMAVDQSIVSPYTSRILKPYIRRDYET 480
Query: 481 KPPKLQLLSQIRSHLHRSDPHWTPEPDAPLDYCYVRPNHIPTINSMCQEFFWPGIDLSEC 540
KPPKLQLLSQIRSHLHRSDPHWTPEPDAPLDYCYVRPNHIPTINSMCQEFFWPGIDLSEC
Sbjct: 481 KPPKLQLLSQIRSHLHRSDPHWTPEPDAPLDYCYVRPNHIPTINSMCQEFFWPGIDLSEC 540
Query: 541 LQYPDFSVVVLYKKVIIAFGFMVPDVKYNEAYISFLFVHPEWRRAGIATFMIYHLIQTCM 600
LQYPDFSVVVLYKKVIIAFGFMVPDVKYNEAYISFLFVHPEWRRAGIATFMIYHLIQTCM
Sbjct: 541 LQYPDFSVVVLYKKVIIAFGFMVPDVKYNEAYISFLFVHPEWRRAGIATFMIYHLIQTCM 600
Query: 601 GKDVTLHVSASNPAMLLYQKFGFKTEEYVLDFYDKYYPLESTECKHAFFLRLRR 654
GKDVTLHVSASNPAMLLYQKFGFKTEEYVLDFYDKYYPLESTECKHAFFLRLRR
Sbjct: 601 GKDVTLHVSASNPAMLLYQKFGFKTEEYVLDFYDKYYPLESTECKHAFFLRLRR 654
>gi|24308203 CSRP2 binding protein isoform a [Homo sapiens]
Length = 782
Score = 1332 bits (3446), Expect = 0.0
Identities = 654/654 (100%), Positives = 654/654 (100%)
Query: 1 MLAMYNLSLEGSGRQGYFRWKEDICAFIEKHWTFLLGNRKKTSTWWSTVAGCLSVGSPMY 60
MLAMYNLSLEGSGRQGYFRWKEDICAFIEKHWTFLLGNRKKTSTWWSTVAGCLSVGSPMY
Sbjct: 129 MLAMYNLSLEGSGRQGYFRWKEDICAFIEKHWTFLLGNRKKTSTWWSTVAGCLSVGSPMY 188
Query: 61 FRSGAQEFGEPGWWKLVHNKPPTMKPEGEKLSASTLKIKAASKPTLDPIITVEGLRKRAS 120
FRSGAQEFGEPGWWKLVHNKPPTMKPEGEKLSASTLKIKAASKPTLDPIITVEGLRKRAS
Sbjct: 189 FRSGAQEFGEPGWWKLVHNKPPTMKPEGEKLSASTLKIKAASKPTLDPIITVEGLRKRAS 248
Query: 121 RNPVESAMELKEKRSRTQEAKDIRRAQKEAAGFLDRSTSSTPVKFISRGRRPDVILEKGE 180
RNPVESAMELKEKRSRTQEAKDIRRAQKEAAGFLDRSTSSTPVKFISRGRRPDVILEKGE
Sbjct: 249 RNPVESAMELKEKRSRTQEAKDIRRAQKEAAGFLDRSTSSTPVKFISRGRRPDVILEKGE 308
Query: 181 VIDFSSLSSSDRTPLTSPSPSPSLDFSAPGTPASHSATPSLLSEADLIPDVMPPQALFHD 240
VIDFSSLSSSDRTPLTSPSPSPSLDFSAPGTPASHSATPSLLSEADLIPDVMPPQALFHD
Sbjct: 309 VIDFSSLSSSDRTPLTSPSPSPSLDFSAPGTPASHSATPSLLSEADLIPDVMPPQALFHD 368
Query: 241 DDEMEGDGVIDPGMEYVPPPAGSVASGPVVGGRKKVRGPEQIKQEVESEEEKPDRMDIDS 300
DDEMEGDGVIDPGMEYVPPPAGSVASGPVVGGRKKVRGPEQIKQEVESEEEKPDRMDIDS
Sbjct: 369 DDEMEGDGVIDPGMEYVPPPAGSVASGPVVGGRKKVRGPEQIKQEVESEEEKPDRMDIDS 428
Query: 301 EDTDSNTSLQTRAREKRKPQLEKDTKPKEPRYTPVSIYEEKLLLKRLEACPGAVAMTPEA 360
EDTDSNTSLQTRAREKRKPQLEKDTKPKEPRYTPVSIYEEKLLLKRLEACPGAVAMTPEA
Sbjct: 429 EDTDSNTSLQTRAREKRKPQLEKDTKPKEPRYTPVSIYEEKLLLKRLEACPGAVAMTPEA 488
Query: 361 RRLKRKLIVRQAKRDRGLPLFDLDQVVNAALLLVDGIYGAKEGGISRLPAGQATYRTTCQ 420
RRLKRKLIVRQAKRDRGLPLFDLDQVVNAALLLVDGIYGAKEGGISRLPAGQATYRTTCQ
Sbjct: 489 RRLKRKLIVRQAKRDRGLPLFDLDQVVNAALLLVDGIYGAKEGGISRLPAGQATYRTTCQ 548
Query: 421 DFRILDRYQTSLPSRKGFRHQTTKFLYRLVGSEDMAVDQSIVSPYTSRILKPYIRRDYET 480
DFRILDRYQTSLPSRKGFRHQTTKFLYRLVGSEDMAVDQSIVSPYTSRILKPYIRRDYET
Sbjct: 549 DFRILDRYQTSLPSRKGFRHQTTKFLYRLVGSEDMAVDQSIVSPYTSRILKPYIRRDYET 608
Query: 481 KPPKLQLLSQIRSHLHRSDPHWTPEPDAPLDYCYVRPNHIPTINSMCQEFFWPGIDLSEC 540
KPPKLQLLSQIRSHLHRSDPHWTPEPDAPLDYCYVRPNHIPTINSMCQEFFWPGIDLSEC
Sbjct: 609 KPPKLQLLSQIRSHLHRSDPHWTPEPDAPLDYCYVRPNHIPTINSMCQEFFWPGIDLSEC 668
Query: 541 LQYPDFSVVVLYKKVIIAFGFMVPDVKYNEAYISFLFVHPEWRRAGIATFMIYHLIQTCM 600
LQYPDFSVVVLYKKVIIAFGFMVPDVKYNEAYISFLFVHPEWRRAGIATFMIYHLIQTCM
Sbjct: 669 LQYPDFSVVVLYKKVIIAFGFMVPDVKYNEAYISFLFVHPEWRRAGIATFMIYHLIQTCM 728
Query: 601 GKDVTLHVSASNPAMLLYQKFGFKTEEYVLDFYDKYYPLESTECKHAFFLRLRR 654
GKDVTLHVSASNPAMLLYQKFGFKTEEYVLDFYDKYYPLESTECKHAFFLRLRR
Sbjct: 729 GKDVTLHVSASNPAMLLYQKFGFKTEEYVLDFYDKYYPLESTECKHAFFLRLRR 782
>gi|14790190 spen homolog, transcriptional regulator [Homo sapiens]
Length = 3664
Score = 43.1 bits (100), Expect = 8e-04
Identities = 56/269 (20%), Positives = 101/269 (37%), Gaps = 31/269 (11%)
Query: 85 KPEGEKLSASTLKIKAAS---KPTLDPIITVEGLRKRASRNPVESAMELKEKRSRTQEAK 141
KP K S + ++ A S KP ++ + + S +P A +L E + + K
Sbjct: 1817 KPNKSKRSKTPVQAAAVSIVEKPVTRKSERIDREKLKRSNSPRGEAQKLLELKMEAE--K 1874
Query: 142 DIRRAQKEAAGFLDRSTSSTPVKFISRGRRPDVILEKGEVIDFSSLSSSDRTPLTSPSPS 201
R A K +A L+ S P +SR RR +V + D + R+P+ P
Sbjct: 1875 ITRTASKNSAADLEHPEPSLP---LSRTRRRNVRSVYATMGDHEN-----RSPVKEPVEQ 1926
Query: 202 PSLDFSAPGTPASHSATPSLLSEADLIPDV----MPPQALFHDDDEMEGDG-----VIDP 252
P + + L EA +P PP+ D+E E + + P
Sbjct: 1927 PRV---------TRKRLERELQEAAAVPTTPRRGRPPKTRRRADEEEENEAKEPAETLKP 1977
Query: 253 GMEYVPPPAGSVASGPVVGGRKKVRGPEQIKQEVESEEEKPDRMDIDSEDTDSNTSLQTR 312
+ P + A+G G+K P+ E+ E ++ + + + +
Sbjct: 1978 PEGWRSPRSQKTAAGGGPQGKKGKNEPKVDATRPEATTEVGPQIGVKESSMEPKAAEEEA 2037
Query: 313 AREKRKPQLEKDTKPKEPRYTPVSIYEEK 341
E+++ + + T P PV + E+K
Sbjct: 2038 GSEQKRDRKDAGTDKNPPETAPVEVVEKK 2066
Score = 32.0 bits (71), Expect = 1.8
Identities = 56/274 (20%), Positives = 91/274 (33%), Gaps = 52/274 (18%)
Query: 79 NKPPTMKPEGEKLSASTLKIKAASKPTLDPIITVEGLRKRASRNPVESAMELKEK-RSRT 137
++PP P+ T + + S T + +G ++ VE + K+K R +T
Sbjct: 2282 SRPPVNAPDPSAGPTDTKEARGNSSETSHSVPEAKGSKE------VEVTLVRKDKGRQKT 2335
Query: 138 QEAKDIRRAQKEAAGFLDRSTSSTPVKFISRGRRPDVILEKGEVIDFSSLSSSDRT---P 194
++ R K+ ++ S P ++G P +G + ++ P
Sbjct: 2336 TRSRRKRNTNKKVVAPVE---SHVPESNQAQGESPAA--NEGTTVQHPEAPQEEKQSEKP 2390
Query: 195 LTSPSPSPSLDFSA--------------PGTPASHSATPSLLSEADLIPDVMPPQALFHD 240
++P S + D S TP S P L P PQA F
Sbjct: 2391 HSTPPQSCTSDLSKIPSTENSSQEISVEERTPTKASVPPDLPPPPQPAPVDEEPQARFRV 2450
Query: 241 DDEMEGDGVIDPGMEYVPPP-----AGSVASGPVVGGRKKVRGPEQIKQEVESEEEKPDR 295
+E D V P +P P + S PV G + P E + +E+P
Sbjct: 2451 HSIIESDPVTPPSDPSIPIPTLPSVTAAKLSPPVASGGIPHQSPPTKVTEWITRQEEP-- 2508
Query: 296 MDIDSEDTDSNTSLQTRAREKRKPQLEKDTKPKE 329
RA+ P L DTK +
Sbjct: 2509 ----------------RAQSTPSPALPPDTKASD 2526
>gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens]
Length = 1303
Score = 40.8 bits (94), Expect = 0.004
Identities = 42/150 (28%), Positives = 62/150 (41%), Gaps = 32/150 (21%)
Query: 190 SDRTPLTSPSPSPSLDFSAPGTPASHSATPSLLSEADLIPDVMPPQALFHDDDEMEGDGV 249
S+ P SP P PS P +P + ATP LL +PD +D E+E +
Sbjct: 13 SESPPPPSPPP-PSTPSPPPCSPDARPATPHLLHHRLPLPD-------DREDGELEEGEL 64
Query: 250 IDPGMEYVPPPAGSVASGPVVGGRKKVRGPEQIKQEVESEEEKPDRMDIDSEDTDSNTSL 309
D G E +G GPE+ S +EK ++ DS++ S+ L
Sbjct: 65 EDDGAEETQDTSG---------------GPER------SRKEKGEKHHSDSDEEKSHRRL 103
Query: 310 ---QTRAREKRKPQLEKDTKPKEPRYTPVS 336
+ + REK K + +K K K R+ S
Sbjct: 104 KRKRKKEREKEKRRSKKRRKSKHKRHASSS 133
>gi|13376735 N-acetyltransferase 13 [Homo sapiens]
Length = 169
Score = 40.0 bits (92), Expect = 0.007
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 572 YISFLFVHPEWRRAGIATFMIYHLIQTCMGKDVT-----LHVSASNPAML-LYQKFGFKT 625
YI L +RR GI T M+ H++ C KD T LHV SN + + Y+KFGF+
Sbjct: 73 YIMTLGCLAPYRRLGIGTKMLNHVLNIC-EKDGTFDNIYLHVQISNESAIDFYRKFGFEI 131
Query: 626 EEYVLDFYDKYYPLES 641
E ++Y + P ++
Sbjct: 132 IETKKNYYKRIEPADA 147
>gi|119943102 CREB binding protein isoform b [Homo sapiens]
Length = 2404
Score = 39.3 bits (90), Expect = 0.012
Identities = 32/149 (21%), Positives = 57/149 (38%), Gaps = 18/149 (12%)
Query: 193 TPLTSPSPSPSLDFSAPGTPASHSA--------TPSLLSEADLIPDVMPPQA--LFHDDD 242
TP +S + PGTP S +A TPS ++ A+ P L +
Sbjct: 903 TPQSSQQQPTPVHAQPPGTPLSQAAASIDNRVPTPSSVASAETNSQQPGPDVPVLEMKTE 962
Query: 243 EMEGDGVIDPGMEYVPPPAGSVASGPVVGGRKKVRGPEQIKQEVESEEEKPDRMDIDSED 302
D DPG P + + + ++G Q+K+E + E+K + M++D +
Sbjct: 963 TQAEDTEPDPGESKGEPRSEMM--------EEDLQGASQVKEETDIAEQKSEPMEVDEKK 1014
Query: 303 TDSNTSLQTRAREKRKPQLEKDTKPKEPR 331
+ ++ + T P +PR
Sbjct: 1015 PEVKVEVKEEEESSSNGTASQSTSPSQPR 1043
>gi|119943104 CREB binding protein isoform a [Homo sapiens]
Length = 2442
Score = 39.3 bits (90), Expect = 0.012
Identities = 32/149 (21%), Positives = 57/149 (38%), Gaps = 18/149 (12%)
Query: 193 TPLTSPSPSPSLDFSAPGTPASHSA--------TPSLLSEADLIPDVMPPQA--LFHDDD 242
TP +S + PGTP S +A TPS ++ A+ P L +
Sbjct: 941 TPQSSQQQPTPVHAQPPGTPLSQAAASIDNRVPTPSSVASAETNSQQPGPDVPVLEMKTE 1000
Query: 243 EMEGDGVIDPGMEYVPPPAGSVASGPVVGGRKKVRGPEQIKQEVESEEEKPDRMDIDSED 302
D DPG P + + + ++G Q+K+E + E+K + M++D +
Sbjct: 1001 TQAEDTEPDPGESKGEPRSEMM--------EEDLQGASQVKEETDIAEQKSEPMEVDEKK 1052
Query: 303 TDSNTSLQTRAREKRKPQLEKDTKPKEPR 331
+ ++ + T P +PR
Sbjct: 1053 PEVKVEVKEEEESSSNGTASQSTSPSQPR 1081
>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [Homo
sapiens]
Length = 3969
Score = 38.9 bits (89), Expect = 0.015
Identities = 47/174 (27%), Positives = 73/174 (41%), Gaps = 26/174 (14%)
Query: 127 AMELKEKRSRTQEAKDIRRAQKEAAGFLDRSTSSTPVKFISRGRRPDVILEKGEVIDFSS 186
A++ KEK+S+T E KD + + +D S TP R D +K SS
Sbjct: 1212 AVKKKEKKSKTSEKKDSKES-SVVKNVVDSSQKPTP------SAREDPAPKK------SS 1258
Query: 187 LSSSDRTPLTSPSPSPSLDFSAPGTPASHSATPSLLSEADLIPD---VMPPQ--ALFHDD 241
R P+ S ++ SAPG + + TP+ + + V+PPQ
Sbjct: 1259 SEPPPRKPVEEKSEEGNV--SAPGPESKQATTPASRKSSKQVSQPALVIPPQPPTTGPPR 1316
Query: 242 DEMEGDGVIDPGMEYVPPPAGSVASGPVVGGRKKV--RGPEQIKQEVESEEEKP 293
E+ +P + PPP SGP +KKV R +KQ+ + +E+ P
Sbjct: 1317 KEVPKTTPSEPKKKQPPPP----ESGPEQSKQKKVAPRPSIPVKQKPKEKEKPP 1366
>gi|126362967 Nck-associated protein 5 isoform 1 [Homo sapiens]
Length = 1909
Score = 38.5 bits (88), Expect = 0.020
Identities = 56/208 (26%), Positives = 85/208 (40%), Gaps = 30/208 (14%)
Query: 186 SLSSSDRT--PLTSPSPSPS-LDFSAPGTPASHSATPSLLSEADLIPDVMPPQALFHDDD 242
+L S RT P T + S S L+ S AS +AT ++ SEA L P + L ++
Sbjct: 1424 ALQSPGRTQHPSTFETSSTSKLETSGRHPDASATATDAVSSEAPLSPTIEEKVMLCIQEN 1483
Query: 243 EMEGDGVIDP-GMEYVPPPAGSVASGPVVGGRKKVRGPEQIKQEVESEEEKPDRMDIDSE 301
+G P +E P S AS G +K R P ++++ + K ++ D
Sbjct: 1484 VEKGQVQTKPTSVEAKQKPGPSFASW---FGFRKSRLPALSSRKMDISKTKVEKKDAKVL 1540
Query: 302 DTDSNTSLQTRAREKRKPQLE--------KDTK----------PKEPRYTPVSIYEEKLL 343
+ R +EK+KP+L+ KDTK K R TP IY + +
Sbjct: 1541 GFGNRQLKSERKKEKKKPELQCETENELIKDTKSADNPDGGLQSKNNRRTPQDIYNQLKI 1600
Query: 344 LKRLEACPGAVA-----MTPEARRLKRK 366
R P A + MT R+ +K
Sbjct: 1601 EPRNRHSPVACSTKDTFMTELLNRVDKK 1628
>gi|189011568 adenomatous polyposis coli [Homo sapiens]
Length = 2843
Score = 38.1 bits (87), Expect = 0.026
Identities = 56/246 (22%), Positives = 90/246 (36%), Gaps = 20/246 (8%)
Query: 125 ESAMELKEKRSRTQEAKDIRRAQKEAAGFLDRSTSSTPVKFISRGRRPDVILEKGEVIDF 184
E A K K ++ EAK + + T + + I+RG+ P IL+K
Sbjct: 1877 EKAELRKAKENKESEAKVTSHTELTSNQQSANKTQAIAKQPINRGQ-PKPILQKQSTFPQ 1935
Query: 185 SSLSSSDRTPLTSPSPSPSLDFSAPGTPASHSATPSLLSEADLIPDVMPPQALFHDDDEM 244
SS DR T +F+ TP S SL S +D+ D+
Sbjct: 1936 SSKDIPDRGAATDEKLQ---NFAIENTPVCFSHNSSLSSLSDI--------------DQE 1978
Query: 245 EGDGVIDPGMEYVPPPAGSVASGPVVGGRKKVRGPEQIKQEVESEEEKPDRMDIDSEDTD 304
+ +P E PP + S P G + S + IDSED
Sbjct: 1979 NNNKENEPIKETEPPDSQGEPSKPQASGYAPKSFHVEDTPVCFSRNSSLSSLSIDSEDDL 2038
Query: 305 SNTSLQTRAREKRKP-QLEKDTKPKEPRYTPVSIYEEKLL-LKRLEACPGAVAMTPEARR 362
+ + +K+KP +L+ D + PR + E+ L LK ++ ++P++
Sbjct: 2039 LQECISSAMPKKKKPSRLKGDNEKHSPRNMGGILGEDLTLDLKDIQRPDSEHGLSPDSEN 2098
Query: 363 LKRKLI 368
K I
Sbjct: 2099 FDWKAI 2104
>gi|189011566 adenomatous polyposis coli [Homo sapiens]
Length = 2843
Score = 38.1 bits (87), Expect = 0.026
Identities = 56/246 (22%), Positives = 90/246 (36%), Gaps = 20/246 (8%)
Query: 125 ESAMELKEKRSRTQEAKDIRRAQKEAAGFLDRSTSSTPVKFISRGRRPDVILEKGEVIDF 184
E A K K ++ EAK + + T + + I+RG+ P IL+K
Sbjct: 1877 EKAELRKAKENKESEAKVTSHTELTSNQQSANKTQAIAKQPINRGQ-PKPILQKQSTFPQ 1935
Query: 185 SSLSSSDRTPLTSPSPSPSLDFSAPGTPASHSATPSLLSEADLIPDVMPPQALFHDDDEM 244
SS DR T +F+ TP S SL S +D+ D+
Sbjct: 1936 SSKDIPDRGAATDEKLQ---NFAIENTPVCFSHNSSLSSLSDI--------------DQE 1978
Query: 245 EGDGVIDPGMEYVPPPAGSVASGPVVGGRKKVRGPEQIKQEVESEEEKPDRMDIDSEDTD 304
+ +P E PP + S P G + S + IDSED
Sbjct: 1979 NNNKENEPIKETEPPDSQGEPSKPQASGYAPKSFHVEDTPVCFSRNSSLSSLSIDSEDDL 2038
Query: 305 SNTSLQTRAREKRKP-QLEKDTKPKEPRYTPVSIYEEKLL-LKRLEACPGAVAMTPEARR 362
+ + +K+KP +L+ D + PR + E+ L LK ++ ++P++
Sbjct: 2039 LQECISSAMPKKKKPSRLKGDNEKHSPRNMGGILGEDLTLDLKDIQRPDSEHGLSPDSEN 2098
Query: 363 LKRKLI 368
K I
Sbjct: 2099 FDWKAI 2104
>gi|53759122 adenomatous polyposis coli [Homo sapiens]
Length = 2843
Score = 38.1 bits (87), Expect = 0.026
Identities = 56/246 (22%), Positives = 90/246 (36%), Gaps = 20/246 (8%)
Query: 125 ESAMELKEKRSRTQEAKDIRRAQKEAAGFLDRSTSSTPVKFISRGRRPDVILEKGEVIDF 184
E A K K ++ EAK + + T + + I+RG+ P IL+K
Sbjct: 1877 EKAELRKAKENKESEAKVTSHTELTSNQQSANKTQAIAKQPINRGQ-PKPILQKQSTFPQ 1935
Query: 185 SSLSSSDRTPLTSPSPSPSLDFSAPGTPASHSATPSLLSEADLIPDVMPPQALFHDDDEM 244
SS DR T +F+ TP S SL S +D+ D+
Sbjct: 1936 SSKDIPDRGAATDEKLQ---NFAIENTPVCFSHNSSLSSLSDI--------------DQE 1978
Query: 245 EGDGVIDPGMEYVPPPAGSVASGPVVGGRKKVRGPEQIKQEVESEEEKPDRMDIDSEDTD 304
+ +P E PP + S P G + S + IDSED
Sbjct: 1979 NNNKENEPIKETEPPDSQGEPSKPQASGYAPKSFHVEDTPVCFSRNSSLSSLSIDSEDDL 2038
Query: 305 SNTSLQTRAREKRKP-QLEKDTKPKEPRYTPVSIYEEKLL-LKRLEACPGAVAMTPEARR 362
+ + +K+KP +L+ D + PR + E+ L LK ++ ++P++
Sbjct: 2039 LQECISSAMPKKKKPSRLKGDNEKHSPRNMGGILGEDLTLDLKDIQRPDSEHGLSPDSEN 2098
Query: 363 LKRKLI 368
K I
Sbjct: 2099 FDWKAI 2104
>gi|95147555 microtubule-associated protein 1A [Homo sapiens]
Length = 2803
Score = 38.1 bits (87), Expect = 0.026
Identities = 39/153 (25%), Positives = 57/153 (37%), Gaps = 23/153 (15%)
Query: 200 PSPSLDFSAPGTPASHSATPSLLSEADLIPDVMPPQALFHDDDEMEGDGVIDPGMEYVPP 259
P+P P TPA S TP+ S G D + V
Sbjct: 1854 PAPLSPAPGPPTPAPESHTPAPFSW---------------------GTAEYDSVVAAVQE 1892
Query: 260 PAGSVASGPVVGGRKKVRGPEQIKQEVESEEEKPDRMDIDSEDTDSNTSLQTRAREKRKP 319
A + GP K R E ++E E E PD+ S+ +++ S T E+ +P
Sbjct: 1893 GAAELEGGPYSPLGKDYRKAEGEREE-EGRAEAPDKSSHSSKVPEASKSHATTEPEQTEP 1951
Query: 320 QLEKDTK-PKEPRYTPVSIYEEKLLLKRLEACP 351
+ + T P E + IYE+ +L ACP
Sbjct: 1952 EQREPTPYPDERSFQYADIYEQMMLTGLGPACP 1984
Score = 37.4 bits (85), Expect = 0.044
Identities = 61/289 (21%), Positives = 113/289 (39%), Gaps = 49/289 (16%)
Query: 80 KPPTMKPEG-EKLSASTLKI---KAASKPTLDPIITVEGLRKRASRNPVESAMELKEKRS 135
KP +K E E L A K+ K K + I +E + + + + ELK+
Sbjct: 376 KPERVKTESSEALKAEKRKLIKDKVGKKHLKEKISKLEEKKDKEKKEIKKERKELKKDEG 435
Query: 136 RTQEAKDIRRAQKEAAGFLDRSTSSTPVKFISRGRRPDVILEKGEVIDFSSLSSSDRTPL 195
R +E KD ++ +K R + +K IS+ E + + + + +
Sbjct: 436 RKEEKKDAKKEEK-------RKDTKPELKKISKPDLKPFTPEVRKTLYKAKVPGRVKIDR 488
Query: 196 TSPSPSPSLDFSAPGTPASHSAT---PSLLSEADLIPDVMPPQALFHDDDEMEGDGVI-- 250
+ S P TP + T P++ +L+ + P+ L D +EM+ +
Sbjct: 489 SRAIRGEKELSSEPQTPPAQKGTVPLPTISGHRELV--LSSPEDLTQDFEEMKREERALL 546
Query: 251 ----DPGMEYVP---------PPA----GSVASGPVVGGRKKVRGPEQIKQEVESEEEKP 293
D G+ P PP+ G+ S P +G + V +++ EV E+
Sbjct: 547 AEQRDTGLGDKPFPLDTAEEGPPSTAIQGTPPSVPGLGQEEHVMKEKELVPEVPEEQGSK 606
Query: 294 DR-MDIDSEDTDSNTSLQ-------------TRAREKRKPQLEKDTKPK 328
DR +D +E + + + T ARE+ +P++++D K
Sbjct: 607 DRGLDSGAETEEEKDTWEEKKQREAERLPDRTEAREESEPEVKEDVIEK 655
Score = 30.8 bits (68), Expect = 4.1
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 283 KQEVESEEEKPDRMDIDSEDTDSNTSLQTRAREKRK---PQLEKDTKPKEPRYTP 334
K++ E +E K +R ++ ++ + EKRK P+L+K +KP +TP
Sbjct: 415 KKDKEKKEIKKERKELKKDEGRKEEKKDAKKEEKRKDTKPELKKISKPDLKPFTP 469
Score = 30.0 bits (66), Expect = 7.0
Identities = 45/167 (26%), Positives = 55/167 (32%), Gaps = 28/167 (16%)
Query: 155 DRSTSSTPVKFISRGRRPDVILEKGEVIDFSSLSSSDRTPLTSPSPSPSLDFSAPGTPAS 214
DR S+ V+ + RG R V G +D TP TS S S S S P
Sbjct: 2463 DRDLSTEEVRLVGRGGRRRV---GGPGTTGGPCPVTDETPPTSASDSGSSQ-SDSDVPPE 2518
Query: 215 HSATPSLLSEADLIPDVMPPQALFHDDDEMEG-DGVIDPGMEYVPPPAGSVASGPVVGGR 273
PS+ +EA L D F D+ G G P + PPP P
Sbjct: 2519 TEECPSITAEAALDSD---EDGDFLPVDKAGGVSGTHHPRPGHDPPPLPQPDPRP----- 2570
Query: 274 KKVRGPEQIKQEVESEEEKPDRMDIDSEDTDSNTSLQTRAREKRKPQ 320
+PD D E S + R REK K Q
Sbjct: 2571 ---------------SPPRPDVCMADPEGLSSESGRVERLREKEKVQ 2602
>gi|38158015 mastermind-like 3 [Homo sapiens]
Length = 1133
Score = 37.0 bits (84), Expect = 0.057
Identities = 53/236 (22%), Positives = 90/236 (38%), Gaps = 31/236 (13%)
Query: 129 ELKEKRSRTQEAKDIRRAQKEAAGFLDRSTSSTPVKFISRGRRPDVILEKGEVIDFSSLS 188
E K++ +Q A + +Q+ A+ D S S P +S G G FS++S
Sbjct: 334 EEKKEPEFSQPATETPLSQESASVKSDPSHS--PFAHVSMGSPQARPSSSGP--PFSTVS 389
Query: 189 SSDRTPLTSPSPSPSLDFSAPGTPASHSATPSLLSEADLIPDVMPPQALFHDDDEMEGDG 248
++ P + +P+ S+P A S P ++A P PP+
Sbjct: 390 TATSLPSVASTPAAPNPASSPANCAVQS--PQTPNQAHT-PGQAPPR------------- 433
Query: 249 VIDPGMEYVPPPAGSV----ASGPVVGGRKKVRGPEQIKQEVESEEEKPDRMDIDSEDTD 304
PG Y+ PA ASGPV + EQ+KQ ++++ M +
Sbjct: 434 ---PGNGYLLNPAAVTVAGSASGPVAVPSSDMSPAEQLKQMAAQQQQRAKLMQQKQQQQQ 490
Query: 305 SNTSLQTRAREKRKPQLEKDTKPKEPRYTPVSIYEEKLLLKRLEACPGAVAMTPEA 360
Q + +++++ Q T P P S Y ++ P + M P+A
Sbjct: 491 QQQQQQQQQQQQQQQQHSNQTSNWSPLGPPSSPYGAAFTAEK----PNSPMMYPQA 542
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 36.6 bits (83), Expect = 0.075
Identities = 46/172 (26%), Positives = 60/172 (34%), Gaps = 14/172 (8%)
Query: 62 RSGAQEFGEPGWWKLVHNKPPTMKPEGEKLSASTLKIKAASKPTLDPIITVEGLRKRASR 121
R+ E G P +PPT P SAS S GL++ ASR
Sbjct: 181 RAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASR 240
Query: 122 NPVESAMELKEKRSRTQEAKDIRRAQKEAAGFLDRSTSSTPVKFISRGRRPDVILEKGEV 181
+ SA L A+ RA S K + R P V + +
Sbjct: 241 SLSSSATPLSSPARSGPSARGTPRAPAHP--------SQPKPKGLQALRPPQVTPPRKDA 292
Query: 182 IDFSSLSSSDRTPLTSPSPSPSLDFSA----PGTPASHSATPSLLSEADLIP 229
+L +PL +PSPS +L A P TP S S T L + L P
Sbjct: 293 AP--ALGPLSSSPLATPSPSAALQSQAPPTLPATPHSSSLTCQLATPLPLAP 342
>gi|225735631 mesoderm induction early response 1 isoform g [Homo
sapiens]
Length = 470
Score = 36.2 bits (82), Expect = 0.098
Identities = 36/154 (23%), Positives = 68/154 (44%), Gaps = 15/154 (9%)
Query: 202 PSLDFSAPGTPAS---HSATPSLLSEADLIPDVMPPQALFHDDDEMEGDGVIDPGMEYVP 258
PS++ S+PG A+ H PS AD++ + +++ MEG+ +E +
Sbjct: 21 PSVESSSPGGSATSDDHEFDPS----ADMLVHDFDDERTLEEEEMMEGETNFSSEIEDLA 76
Query: 259 P----PAGSVASGPVVGGRKKVRGPEQIKQEVESEEEKPDRMDIDSEDTD--SNTSLQTR 312
P + S + G VR PE+ ++E E EEE D D D++D S + +
Sbjct: 77 REGDMPIHELLS--LYGYGSTVRLPEEDEEEEEEEEEGEDDEDADNDDNSGCSGENKEEN 134
Query: 313 AREKRKPQLEKDTKPKEPRYTPVSIYEEKLLLKR 346
++ + E + +P + S ++++ R
Sbjct: 135 IKDSSGQEDETQSSNDDPSQSVASQDAQEIIRPR 168
>gi|225735615 mesoderm induction early response 1 isoform a [Homo
sapiens]
Length = 529
Score = 36.2 bits (82), Expect = 0.098
Identities = 36/154 (23%), Positives = 68/154 (44%), Gaps = 15/154 (9%)
Query: 202 PSLDFSAPGTPAS---HSATPSLLSEADLIPDVMPPQALFHDDDEMEGDGVIDPGMEYVP 258
PS++ S+PG A+ H PS AD++ + +++ MEG+ +E +
Sbjct: 21 PSVESSSPGGSATSDDHEFDPS----ADMLVHDFDDERTLEEEEMMEGETNFSSEIEDLA 76
Query: 259 P----PAGSVASGPVVGGRKKVRGPEQIKQEVESEEEKPDRMDIDSEDTD--SNTSLQTR 312
P + S + G VR PE+ ++E E EEE D D D++D S + +
Sbjct: 77 REGDMPIHELLS--LYGYGSTVRLPEEDEEEEEEEEEGEDDEDADNDDNSGCSGENKEEN 134
Query: 313 AREKRKPQLEKDTKPKEPRYTPVSIYEEKLLLKR 346
++ + E + +P + S ++++ R
Sbjct: 135 IKDSSGQEDETQSSNDDPSQSVASQDAQEIIRPR 168
>gi|118130872 mesoderm induction early response 1 isoform f [Homo
sapiens]
Length = 433
Score = 36.2 bits (82), Expect = 0.098
Identities = 36/154 (23%), Positives = 68/154 (44%), Gaps = 15/154 (9%)
Query: 202 PSLDFSAPGTPAS---HSATPSLLSEADLIPDVMPPQALFHDDDEMEGDGVIDPGMEYVP 258
PS++ S+PG A+ H PS AD++ + +++ MEG+ +E +
Sbjct: 4 PSVESSSPGGSATSDDHEFDPS----ADMLVHDFDDERTLEEEEMMEGETNFSSEIEDLA 59
Query: 259 P----PAGSVASGPVVGGRKKVRGPEQIKQEVESEEEKPDRMDIDSEDTD--SNTSLQTR 312
P + S + G VR PE+ ++E E EEE D D D++D S + +
Sbjct: 60 REGDMPIHELLS--LYGYGSTVRLPEEDEEEEEEEEEGEDDEDADNDDNSGCSGENKEEN 117
Query: 313 AREKRKPQLEKDTKPKEPRYTPVSIYEEKLLLKR 346
++ + E + +P + S ++++ R
Sbjct: 118 IKDSSGQEDETQSSNDDPSQSVASQDAQEIIRPR 151
>gi|225735612 mesoderm induction early response 1 isoform e [Homo
sapiens]
Length = 486
Score = 36.2 bits (82), Expect = 0.098
Identities = 36/154 (23%), Positives = 68/154 (44%), Gaps = 15/154 (9%)
Query: 202 PSLDFSAPGTPAS---HSATPSLLSEADLIPDVMPPQALFHDDDEMEGDGVIDPGMEYVP 258
PS++ S+PG A+ H PS AD++ + +++ MEG+ +E +
Sbjct: 57 PSVESSSPGGSATSDDHEFDPS----ADMLVHDFDDERTLEEEEMMEGETNFSSEIEDLA 112
Query: 259 P----PAGSVASGPVVGGRKKVRGPEQIKQEVESEEEKPDRMDIDSEDTD--SNTSLQTR 312
P + S + G VR PE+ ++E E EEE D D D++D S + +
Sbjct: 113 REGDMPIHELLS--LYGYGSTVRLPEEDEEEEEEEEEGEDDEDADNDDNSGCSGENKEEN 170
Query: 313 AREKRKPQLEKDTKPKEPRYTPVSIYEEKLLLKR 346
++ + E + +P + S ++++ R
Sbjct: 171 IKDSSGQEDETQSSNDDPSQSVASQDAQEIIRPR 204
>gi|225735610 mesoderm induction early response 1 isoform d [Homo
sapiens]
Length = 450
Score = 36.2 bits (82), Expect = 0.098
Identities = 36/154 (23%), Positives = 68/154 (44%), Gaps = 15/154 (9%)
Query: 202 PSLDFSAPGTPAS---HSATPSLLSEADLIPDVMPPQALFHDDDEMEGDGVIDPGMEYVP 258
PS++ S+PG A+ H PS AD++ + +++ MEG+ +E +
Sbjct: 21 PSVESSSPGGSATSDDHEFDPS----ADMLVHDFDDERTLEEEEMMEGETNFSSEIEDLA 76
Query: 259 P----PAGSVASGPVVGGRKKVRGPEQIKQEVESEEEKPDRMDIDSEDTD--SNTSLQTR 312
P + S + G VR PE+ ++E E EEE D D D++D S + +
Sbjct: 77 REGDMPIHELLS--LYGYGSTVRLPEEDEEEEEEEEEGEDDEDADNDDNSGCSGENKEEN 134
Query: 313 AREKRKPQLEKDTKPKEPRYTPVSIYEEKLLLKR 346
++ + E + +P + S ++++ R
Sbjct: 135 IKDSSGQEDETQSSNDDPSQSVASQDAQEIIRPR 168
>gi|118130815 mesoderm induction early response 1 isoform c [Homo
sapiens]
Length = 512
Score = 36.2 bits (82), Expect = 0.098
Identities = 36/154 (23%), Positives = 68/154 (44%), Gaps = 15/154 (9%)
Query: 202 PSLDFSAPGTPAS---HSATPSLLSEADLIPDVMPPQALFHDDDEMEGDGVIDPGMEYVP 258
PS++ S+PG A+ H PS AD++ + +++ MEG+ +E +
Sbjct: 4 PSVESSSPGGSATSDDHEFDPS----ADMLVHDFDDERTLEEEEMMEGETNFSSEIEDLA 59
Query: 259 P----PAGSVASGPVVGGRKKVRGPEQIKQEVESEEEKPDRMDIDSEDTD--SNTSLQTR 312
P + S + G VR PE+ ++E E EEE D D D++D S + +
Sbjct: 60 REGDMPIHELLS--LYGYGSTVRLPEEDEEEEEEEEEGEDDEDADNDDNSGCSGENKEEN 117
Query: 313 AREKRKPQLEKDTKPKEPRYTPVSIYEEKLLLKR 346
++ + E + +P + S ++++ R
Sbjct: 118 IKDSSGQEDETQSSNDDPSQSVASQDAQEIIRPR 151
>gi|225735607 mesoderm induction early response 1 isoform b [Homo
sapiens]
Length = 565
Score = 36.2 bits (82), Expect = 0.098
Identities = 36/154 (23%), Positives = 68/154 (44%), Gaps = 15/154 (9%)
Query: 202 PSLDFSAPGTPAS---HSATPSLLSEADLIPDVMPPQALFHDDDEMEGDGVIDPGMEYVP 258
PS++ S+PG A+ H PS AD++ + +++ MEG+ +E +
Sbjct: 57 PSVESSSPGGSATSDDHEFDPS----ADMLVHDFDDERTLEEEEMMEGETNFSSEIEDLA 112
Query: 259 P----PAGSVASGPVVGGRKKVRGPEQIKQEVESEEEKPDRMDIDSEDTD--SNTSLQTR 312
P + S + G VR PE+ ++E E EEE D D D++D S + +
Sbjct: 113 REGDMPIHELLS--LYGYGSTVRLPEEDEEEEEEEEEGEDDEDADNDDNSGCSGENKEEN 170
Query: 313 AREKRKPQLEKDTKPKEPRYTPVSIYEEKLLLKR 346
++ + E + +P + S ++++ R
Sbjct: 171 IKDSSGQEDETQSSNDDPSQSVASQDAQEIIRPR 204
>gi|225735605 mesoderm induction early response 1 isoform a [Homo
sapiens]
Length = 529
Score = 36.2 bits (82), Expect = 0.098
Identities = 36/154 (23%), Positives = 68/154 (44%), Gaps = 15/154 (9%)
Query: 202 PSLDFSAPGTPAS---HSATPSLLSEADLIPDVMPPQALFHDDDEMEGDGVIDPGMEYVP 258
PS++ S+PG A+ H PS AD++ + +++ MEG+ +E +
Sbjct: 21 PSVESSSPGGSATSDDHEFDPS----ADMLVHDFDDERTLEEEEMMEGETNFSSEIEDLA 76
Query: 259 P----PAGSVASGPVVGGRKKVRGPEQIKQEVESEEEKPDRMDIDSEDTD--SNTSLQTR 312
P + S + G VR PE+ ++E E EEE D D D++D S + +
Sbjct: 77 REGDMPIHELLS--LYGYGSTVRLPEEDEEEEEEEEEGEDDEDADNDDNSGCSGENKEEN 134
Query: 313 AREKRKPQLEKDTKPKEPRYTPVSIYEEKLLLKR 346
++ + E + +P + S ++++ R
Sbjct: 135 IKDSSGQEDETQSSNDDPSQSVASQDAQEIIRPR 168
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 35.8 bits (81), Expect = 0.13
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Query: 240 DDDEMEGDGVIDPGMEYVPPPAGSVASGPVVGGRKKVRGPEQIKQEVESEEEKPDRMDID 299
DDD+ E D + ME P A V K + + + E E +E++ D D D
Sbjct: 197 DDDDDEEDDSEEEAMETTPAKGKKAAKVVPV----KAKNVAEDEDEEEDDEDEDDDDDED 252
Query: 300 SEDTDSNTSLQTRAREKRKPQLEKDTKPKE 329
ED D + E+ +P E K K+
Sbjct: 253 DEDDDDEDDEEEEEEEEEEPVKEAPGKRKK 282
>gi|55953110 retinoblastoma protein-binding zinc finger protein
isoform c [Homo sapiens]
Length = 1481
Score = 35.8 bits (81), Expect = 0.13
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 278 GPEQIKQEVESEEEKPDRMDIDSEDTDSNTSLQTRAREKRKPQLEKDTKPKEPRYTPVSI 337
G E+ ++E E EEE+ D D + ED + ++P++ D KP++ P +
Sbjct: 66 GEEEEEEEEEDEEEEEDDDDDELEDEGEEEASMPNENSVKEPEIRCDEKPEDLLEEPKTT 125
Query: 338 YEEKL 342
EE L
Sbjct: 126 SEETL 130
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 35.8 bits (81), Expect = 0.13
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 278 GPEQIKQEVESEEEKPDRMDIDSEDTDSNTSLQTRAREKRKPQLEKDTKPKEPRYTPVSI 337
G E+ ++E E EEE+ D D + ED + ++P++ D KP++ P +
Sbjct: 267 GEEEEEEEEEDEEEEEDDDDDELEDEGEEEASMPNENSVKEPEIRCDEKPEDLLEEPKTT 326
Query: 338 YEEKL 342
EE L
Sbjct: 327 SEETL 331
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 35.8 bits (81), Expect = 0.13
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 278 GPEQIKQEVESEEEKPDRMDIDSEDTDSNTSLQTRAREKRKPQLEKDTKPKEPRYTPVSI 337
G E+ ++E E EEE+ D D + ED + ++P++ D KP++ P +
Sbjct: 267 GEEEEEEEEEDEEEEEDDDDDELEDEGEEEASMPNENSVKEPEIRCDEKPEDLLEEPKTT 326
Query: 338 YEEKL 342
EE L
Sbjct: 327 SEETL 331
>gi|118498359 ribosomal L1 domain containing 1 [Homo sapiens]
Length = 490
Score = 35.4 bits (80), Expect = 0.17
Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 7/126 (5%)
Query: 251 DPGMEYVPPPAGSVASGPVVGGRKKVRGPEQIKQEVESEEEKPDRMDIDSEDTDSNTSLQ 310
+ G V P P G +K+ RG Q+K ESE+E P + I + T +N ++
Sbjct: 324 ESGDTTVKKPESKKEQTPEHGKKKRGRGKAQVKATNESEDEIPQLVPI-GKKTPANEKVE 382
Query: 311 TRAREKRKPQLEKDTKPKEPRYTPVSIYEEKLLLKRLEACPGAVAMTPEARRLKRKLIVR 370
+ K K P PR +++ L E A + TP K+ I
Sbjct: 383 IQKHATGKKSPAKSPNPSTPR------GKKRKALPASETPKAAESETPGKSPEKKPKIKE 436
Query: 371 QAKRDR 376
+A +++
Sbjct: 437 EAVKEK 442
>gi|7662310 FERM, RhoGEF and pleckstrin domain protein 2 [Homo
sapiens]
Length = 1054
Score = 35.4 bits (80), Expect = 0.17
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 12/82 (14%)
Query: 195 LTSPSPSPSLDFS----APGTPASHSATPSLLSEADLIPDVMPPQALFHDDDEMEGDGVI 250
LT+ P S+ F P +P+S +A SL S + L+P +P F D +
Sbjct: 379 LTADLPKQSISFPEGLRTPASPSSANAFYSL-SPSTLVPSGLPE---FKDSSS----SLT 430
Query: 251 DPGMEYVPPPAGSVASGPVVGG 272
DP + YV PA SG V GG
Sbjct: 431 DPQVSYVKSPAAERRSGAVAGG 452
>gi|11415052 retinoid X receptor, beta [Homo sapiens]
Length = 533
Score = 35.0 bits (79), Expect = 0.22
Identities = 31/87 (35%), Positives = 34/87 (39%), Gaps = 8/87 (9%)
Query: 183 DFSSLSSSDRTPLTSPSPSPSLDFSAPGTPASHSATPSLLSEADLIPDVMPPQALFHDDD 242
D S SS PL P PS PG P S PSL P MPP L
Sbjct: 79 DSRSPDSSSPNPLPQGVPPPS----PPGPPLPPSTAPSLGGSGAPPPPPMPPPPL-GSPF 133
Query: 243 EMEGDGVIDPGMEYVPPPAGSVASGPV 269
+ + PG+ PPPA SGPV
Sbjct: 134 PVISSSMGSPGL---PPPAPPGFSGPV 157
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,607,302
Number of Sequences: 37866
Number of extensions: 1430370
Number of successful extensions: 7749
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 188
Number of HSP's that attempted gapping in prelim test: 7329
Number of HSP's gapped (non-prelim): 556
length of query: 654
length of database: 18,247,518
effective HSP length: 109
effective length of query: 545
effective length of database: 14,120,124
effective search space: 7695467580
effective search space used: 7695467580
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.