Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: KDM6A Sequence: fasta or formatted (1401aa) NCBI GI: 189011544
Description:

ubiquitously transcribed tetratricopeptide repeat, X chromosome

Referenced in:

Gene Families
Histones, Related Proteins, and Modifying Enzymes
Tetratricopeptide Domains

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7        108           7
 C cysteine            2.4         33           1
 D aspartate           3.5         49           2
 E glutamate           5.3         74           2
 F phenylalanine       2.6         37           2
 G glycine             6.3         88           2
 H histidine           3.6         51           2
 I isoleucine          3.6         50           2
 K lysine              5.3         74           2
 L leucine            10.1        141           3
 M methionine          1.7         24           1
 N asparagine          6.5         91           3
 P proline             6.1         86           3
 Q glutamine           6.1         86           3
 R arginine            3.4         47           3
 S serine             10.0        140           2
 T threonine           6.1         85           3
 V valine              5.1         72           2
 W tryptophan          1.7         24           2
 Y tyrosine            2.9         41           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquitously transcribed tetratricopeptide repeat, ... 
UTY                   0.815   tetratricopeptide repeat protein isoform 3 
UTY                   0.750   tetratricopeptide repeat protein isoform 2 
UTY                   0.574   tetratricopeptide repeat protein isoform 1 
KDM6B                 0.241   lysine (K)-specific demethylase 6B 
OGT                   0.012   O-linked GlcNAc transferase isoform 2 
OGT                   0.012   O-linked GlcNAc transferase isoform 1 
MUC6                  0.012   mucin 6, gastric 
CDC23                 0.010   cell division cycle protein 23 
BBS4                  0.009   Bardet-Biedl syndrome 4 
MUC21                 0.009   mucin 21 
TTC37                 0.009   tetratricopeptide repeat domain 37 
TTC28                 0.009   tetratricopeptide repeat domain 28 
TNRC6A                0.009   trinucleotide repeat containing 6A 
TMTC3                 0.009   transmembrane and tetratricopeptide repeat containi...
MUC4                  0.008   mucin 4 isoform a 
MAGEE1                0.008   melanoma antigen family E, 1 
LOC100133714          0.008   PREDICTED: similar to Mucin-12, partial 
MUC12                 0.008   PREDICTED: mucin 12 
CDC27                 0.008   cell division cycle protein 27 isoform 1 
CDC27                 0.008   cell division cycle protein 27 isoform 2 
MUC12                 0.007   PREDICTED: mucin 12 
TMTC4                 0.007   transmembrane and tetratricopeptide repeat containi...
TMTC4                 0.007   transmembrane and tetratricopeptide repeat containi...
MUC5AC                0.006   mucin 5AC 
LOC729792             0.006   PREDICTED: hypothetical protein 
LOC729792             0.006   PREDICTED: hypothetical protein 
LOC729792             0.006   PREDICTED: hypothetical protein 
LOC100294501          0.006   PREDICTED: hypothetical protein 
LOC100294249          0.006   PREDICTED: hypothetical protein XP_002344067 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press