Guide to the Human Genome
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Name: LRP10 Sequence: fasta or formatted (713aa) NCBI GI: 32490559
Description:

low density lipoprotein receptor-related protein 10 precursor

Referenced in:

Lipoproteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         62           2
 C cysteine            4.6         33           1
 D aspartate           5.5         39           2
 E glutamate           5.2         37           2
 F phenylalanine       2.2         16           1
 G glycine            10.1         72           3
 H histidine           2.1         15           1
 I isoleucine          2.2         16           2
 K lysine              1.0          7           1
 L leucine            12.1         86           6
 M methionine          0.8          6           1
 N asparagine          2.1         15           1
 P proline            10.1         72           2
 Q glutamine           4.2         30           3
 R arginine            7.0         50           3
 S serine              7.0         50           2
 T threonine           5.3         38           2
 V valine              5.9         42           2
 W tryptophan          1.4         10           1
 Y tyrosine            2.4         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   low density lipoprotein receptor-related protein 10 ... 
LRP3                  0.288   low density lipoprotein receptor-related protein 3 ...
LRP12                 0.241   low density lipoprotein-related protein 12 isoform a ...
LRP12                 0.240   low density lipoprotein-related protein 12 isoform ...
LRP1                  0.052   low density lipoprotein-related protein 1 
VLDLR                 0.045   very low density lipoprotein receptor isoform b [Hom...
VLDLR                 0.045   very low density lipoprotein receptor isoform a [Hom...
LRP4                  0.042   low density lipoprotein receptor-related protein 4 ...
LDLR                  0.042   low density lipoprotein receptor precursor 
LDLRAD3               0.042   low density lipoprotein receptor class A domain cont...
LRP2                  0.042   low density lipoprotein-related protein 2 
LRP1B                 0.040   low density lipoprotein-related protein 1B precursor...
LRP5                  0.040   low density lipoprotein receptor-related protein 5 ...
LRP8                  0.037   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.037   low density lipoprotein receptor-related protein 8 i...
SORL1                 0.037   sortilin-related receptor containing LDLR class A rep...
HSPG2                 0.037   heparan sulfate proteoglycan 2 
LRP6                  0.036   low density lipoprotein receptor-related protein 6 ...
SSPO                  0.036   SCO-spondin 
CORIN                 0.035   corin 
MFRP                  0.034   membrane frizzled-related protein 
ST14                  0.032   matriptase 
LRP8                  0.030   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.030   low density lipoprotein receptor-related protein 8 i...
CD320                 0.030   8D6 antigen 
TMPRSS6               0.028   transmembrane protease, serine 6 
TMPRSS7               0.025   transmembrane protease, serine 7 
CSMD2                 0.020   CUB and Sushi multiple domains 2 
SMARCC2               0.018   SWI/SNF-related matrix-associated actin-dependent r...
LOC100131102          0.017   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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