ATG4D 24622

Name: ATG4D	Sequence: fasta or formatted (474aa)		NCBI GI: 27903825
Description: APG4 autophagy 4 homolog D		Referenced in: Additional Membrane Functions
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.2 34 3 C cysteine 3.0 14 1 D aspartate 5.5 26 2 E glutamate 5.1 24 1 F phenylalanine 4.2 20 1 G glycine 8.4 40 2 H histidine 2.5 12 1 I isoleucine 1.7 8 1 K lysine 3.6 17 2 L leucine 10.1 48 3 M methionine 2.1 10 2 N asparagine 1.1 5 2 P proline 8.6 41 2 Q glutamine 3.4 16 1 R arginine 9.1 43 3 S serine 9.1 43 4 T threonine 3.8 18 1 V valine 6.1 29 2 W tryptophan 2.3 11 1 Y tyrosine 3.2 15 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 APG4 autophagy 4 homolog D ATG4C 0.396 APG4 autophagy 4 homolog C isoform 8 ATG4C 0.396 APG4 autophagy 4 homolog C isoform 7 ATG4A 0.178 autophagy-related cysteine endopeptidase 2 isoform a... ATG4B 0.172 APG4 autophagy 4 homolog B isoform a ATG4B 0.172 APG4 autophagy 4 homolog B isoform b ATG4A 0.121 autophagy-related cysteine endopeptidase 2 isoform b... SHANK1 0.011 SH3 and multiple ankyrin repeat domains 1 C9orf75 0.010 hypothetical protein LOC286262 isoform 2 C9orf75 0.010 hypothetical protein LOC286262 isoform 1 SHANK3 0.010 SH3 and multiple ankyrin repeat domains 3 ZDHHC5 0.009 zinc finger, DHHC domain containing 5 COL27A1 0.009 collagen, type XXVII, alpha 1 COL9A3 0.008 alpha 3 type IX collagen MAPT 0.008 microtubule-associated protein tau isoform 6 SSPO 0.008 SCO-spondin MLXIP 0.008 MLX interacting protein CNGB1 0.007 cyclic nucleotide gated channel beta 1 isoform a [H... C20orf186 0.007 antimicrobial peptide RY2G5 COL1A1 0.007 alpha 1 type I collagen preproprotein COL2A1 0.007 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL2A1 0.007 collagen, type II, alpha 1 isoform 2 precursor [Hom... HS6ST3 0.007 PREDICTED: heparan sulfate 6-O-sulfotransferase 3 [... PABPN1 0.007 poly(A) binding protein, nuclear 1 HS6ST3 0.007 heparan sulfate 6-O-sulfotransferase 3 COL8A1 0.007 alpha 1 type VIII collagen precursor COL8A1 0.007 alpha 1 type VIII collagen precursor EMID2 0.007 EMI domain containing 2 WDR33 0.007 WD repeat domain 33 isoform 1 COL1A2 0.007 alpha 2 type I collagen Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.