Guide to the Human Genome
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Name: ATG4C Sequence: fasta or formatted (458aa) NCBI GI: 30410846
Description:

APG4 autophagy 4 homolog C isoform 8

Referenced in:

Additional Membrane Functions

Other entries for this name:
alt mRNA [458aa] APG4 autophagy 4 homolog C isoform 7
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         22           1
 C cysteine            2.2         10           1
 D aspartate           7.0         32           2
 E glutamate           7.6         35           2
 F phenylalanine       6.1         28           1
 G glycine             6.1         28           2
 H histidine           2.6         12           1
 I isoleucine          5.7         26           2
 K lysine              8.3         38           2
 L leucine             7.9         36           3
 M methionine          2.0          9           1
 N asparagine          2.8         13           2
 P proline             3.5         16           1
 Q glutamine           2.6         12           1
 R arginine            3.9         18           1
 S serine              8.3         38           2
 T threonine           7.2         33           3
 V valine              5.0         23           2
 W tryptophan          2.0          9           1
 Y tyrosine            4.4         20           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   APG4 autophagy 4 homolog C isoform 8 
ATG4C                 1.000   APG4 autophagy 4 homolog C isoform 7 
ATG4D                 0.416   APG4 autophagy 4 homolog D 
ATG4A                 0.168   autophagy-related cysteine endopeptidase 2 isoform a...
ATG4B                 0.148   APG4 autophagy 4 homolog B isoform b 
ATG4B                 0.148   APG4 autophagy 4 homolog B isoform a 
ATG4A                 0.117   autophagy-related cysteine endopeptidase 2 isoform b...
GCDH                  0.008   glutaryl-Coenzyme A dehydrogenase isoform a precursor...
GCDH                  0.008   glutaryl-Coenzyme A dehydrogenase isoform b precursor...
ZFR                   0.005   zinc finger RNA binding protein 
PPFIA1                0.004   PTPRF interacting protein alpha 1 isoform a 
PPFIA1                0.004   PTPRF interacting protein alpha 1 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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