ATG4B 30443

Name: ATG4B	Sequence: fasta or formatted (393aa)		NCBI GI: 47132611
Description: APG4 autophagy 4 homolog B isoform a		Referenced in: Additional Membrane Functions
Other entries for this name: alt prot [380aa] APG4 autophagy 4 homolog B isoform b
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.6 26 2 C cysteine 3.3 13 1 D aspartate 7.1 28 2 E glutamate 6.4 25 2 F phenylalanine 5.9 23 2 G glycine 6.6 26 2 H histidine 2.5 10 1 I isoleucine 5.1 20 1 K lysine 3.3 13 2 L leucine 9.4 37 2 M methionine 2.5 10 2 N asparagine 2.5 10 1 P proline 6.4 25 2 Q glutamine 3.6 14 2 R arginine 5.3 21 2 S serine 6.9 27 2 T threonine 5.6 22 2 V valine 5.9 23 2 W tryptophan 2.3 9 1 Y tyrosine 2.8 11 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 APG4 autophagy 4 homolog B isoform a ATG4B 0.945 APG4 autophagy 4 homolog B isoform b ATG4A 0.520 autophagy-related cysteine endopeptidase 2 isoform a... ATG4A 0.323 autophagy-related cysteine endopeptidase 2 isoform b... ATG4D 0.209 APG4 autophagy 4 homolog D ATG4C 0.170 APG4 autophagy 4 homolog C isoform 8 ATG4C 0.170 APG4 autophagy 4 homolog C isoform 7 C17orf70 0.008 Fanconi anemia core complex 100 kDa subunit isoform... C17orf70 0.008 Fanconi anemia core complex 100 kDa subunit isoform... TAX1BP1 0.006 Tax1 (human T-cell leukemia virus type I) binding pr... C14orf166 0.005 homeobox prox 1 LMO7 0.005 LIM domain only 7 isoform 2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.