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Search of human proteins with 253795514
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|253795514 choline phosphate cytidylyltransferase 1 beta
isoform 2 [Homo sapiens]
(351 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|253795514 choline phosphate cytidylyltransferase 1 beta isofo... 716 0.0
gi|21361202 choline phosphate cytidylyltransferase 1 beta isofor... 673 0.0
gi|253795516 choline phosphate cytidylyltransferase 1 beta isofo... 582 e-166
gi|31543385 choline phosphate cytidylyltransferase 1 alpha [Homo... 495 e-140
gi|4505651 phosphate cytidylyltransferase 2, ethanolamine [Homo ... 104 1e-22
gi|116014339 olfactomedin-like 2A [Homo sapiens] 37 0.027
gi|116089325 splicing factor, arginine/serine-rich 12 isoform a ... 37 0.035
gi|21040255 splicing factor, arginine/serine-rich 12 isoform b [... 37 0.035
gi|110347418 structural maintenance of chromosomes 2 [Homo sapiens] 34 0.22
gi|110347425 structural maintenance of chromosomes 2 [Homo sapiens] 34 0.22
gi|110347420 structural maintenance of chromosomes 2 [Homo sapiens] 34 0.22
gi|218563737 hypothetical protein LOC124944 isoform 1 [Homo sapi... 33 0.29
gi|52856421 hypothetical protein LOC124944 isoform 2 [Homo sapiens] 33 0.29
gi|188497618 connector enhancer of kinase suppressor of Ras 1 [H... 33 0.29
gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo sa... 33 0.38
gi|109255234 centrosomal protein 290kDa [Homo sapiens] 33 0.38
gi|193083191 synaptopodin 2 isoform c [Homo sapiens] 33 0.38
gi|193083185 synaptopodin 2 isoform b [Homo sapiens] 33 0.38
gi|193083183 synaptopodin 2 isoform a [Homo sapiens] 33 0.38
gi|10880975 hypothetical protein LOC57821 [Homo sapiens] 33 0.38
gi|83367077 mucin 16 [Homo sapiens] 33 0.50
gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens] 33 0.50
gi|155030230 sorbin and SH3 domain containing 3 isoform 1 [Homo ... 33 0.50
gi|38683860 insulin receptor substrate 2 [Homo sapiens] 33 0.50
gi|218563739 hypothetical protein LOC124944 isoform 3 [Homo sapi... 32 0.65
gi|150170729 microtubule associated serine/threonine kinase 3 [H... 32 0.65
gi|122937426 RGP1 retrograde golgi transport homolog [Homo sapiens] 32 0.65
gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens] 32 0.85
gi|188528616 testis specific, 10 [Homo sapiens] 32 0.85
gi|13376858 testis specific, 10 [Homo sapiens] 32 0.85
>gi|253795514 choline phosphate cytidylyltransferase 1 beta isoform
2 [Homo sapiens]
Length = 351
Score = 716 bits (1849), Expect = 0.0
Identities = 351/351 (100%), Positives = 351/351 (100%)
Query: 1 MVGHQECIMEEDNRAPQLWRKTLTAPAPFADETNCQCQAPHEKLTIAQARLGTPADRPVR 60
MVGHQECIMEEDNRAPQLWRKTLTAPAPFADETNCQCQAPHEKLTIAQARLGTPADRPVR
Sbjct: 1 MVGHQECIMEEDNRAPQLWRKTLTAPAPFADETNCQCQAPHEKLTIAQARLGTPADRPVR 60
Query: 61 VYADGIFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHKFKGFTVMNEAERYEALRH 120
VYADGIFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHKFKGFTVMNEAERYEALRH
Sbjct: 61 VYADGIFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHKFKGFTVMNEAERYEALRH 120
Query: 121 CRYVDEVIRDAPWTLTPEFLEKHKIDFVAHDDIPYSSAGSDDVYKHIKEAGMFVPTQRTE 180
CRYVDEVIRDAPWTLTPEFLEKHKIDFVAHDDIPYSSAGSDDVYKHIKEAGMFVPTQRTE
Sbjct: 121 CRYVDEVIRDAPWTLTPEFLEKHKIDFVAHDDIPYSSAGSDDVYKHIKEAGMFVPTQRTE 180
Query: 181 GISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKRYRFQNQVDKMKEKVKNVEE 240
GISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKRYRFQNQVDKMKEKVKNVEE
Sbjct: 181 GISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKRYRFQNQVDKMKEKVKNVEE 240
Query: 241 RSKEFVNRVEEKSHDLIQKWEEKSREFIGNFLELFGPDGAWKQMFQERSSRMLQALSPKQ 300
RSKEFVNRVEEKSHDLIQKWEEKSREFIGNFLELFGPDGAWKQMFQERSSRMLQALSPKQ
Sbjct: 241 RSKEFVNRVEEKSHDLIQKWEEKSREFIGNFLELFGPDGAWKQMFQERSSRMLQALSPKQ 300
Query: 301 SPVSSPTRSRSPSRSPSPTFSWLPLKTSPPSSPKAASASISSMSEGDEDEK 351
SPVSSPTRSRSPSRSPSPTFSWLPLKTSPPSSPKAASASISSMSEGDEDEK
Sbjct: 301 SPVSSPTRSRSPSRSPSPTFSWLPLKTSPPSSPKAASASISSMSEGDEDEK 351
>gi|21361202 choline phosphate cytidylyltransferase 1 beta isoform 1
[Homo sapiens]
Length = 369
Score = 673 bits (1737), Expect = 0.0
Identities = 335/346 (96%), Positives = 338/346 (97%), Gaps = 1/346 (0%)
Query: 6 ECIMEEDNRAPQLWRKTLTAPAPFADETNCQCQAPHEKLTIAQARLGTPADRPVRVYADG 65
E + E ++ PQ R TLTAPAPFADETNCQCQAPHEKLTIAQARLGTPADRPVRVYADG
Sbjct: 25 ETMEEIEHTCPQP-RLTLTAPAPFADETNCQCQAPHEKLTIAQARLGTPADRPVRVYADG 83
Query: 66 IFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHKFKGFTVMNEAERYEALRHCRYVD 125
IFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHKFKGFTVMNEAERYEALRHCRYVD
Sbjct: 84 IFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHKFKGFTVMNEAERYEALRHCRYVD 143
Query: 126 EVIRDAPWTLTPEFLEKHKIDFVAHDDIPYSSAGSDDVYKHIKEAGMFVPTQRTEGISTS 185
EVIRDAPWTLTPEFLEKHKIDFVAHDDIPYSSAGSDDVYKHIKEAGMFVPTQRTEGISTS
Sbjct: 144 EVIRDAPWTLTPEFLEKHKIDFVAHDDIPYSSAGSDDVYKHIKEAGMFVPTQRTEGISTS 203
Query: 186 DIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKRYRFQNQVDKMKEKVKNVEERSKEF 245
DIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKRYRFQNQVDKMKEKVKNVEERSKEF
Sbjct: 204 DIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKRYRFQNQVDKMKEKVKNVEERSKEF 263
Query: 246 VNRVEEKSHDLIQKWEEKSREFIGNFLELFGPDGAWKQMFQERSSRMLQALSPKQSPVSS 305
VNRVEEKSHDLIQKWEEKSREFIGNFLELFGPDGAWKQMFQERSSRMLQALSPKQSPVSS
Sbjct: 264 VNRVEEKSHDLIQKWEEKSREFIGNFLELFGPDGAWKQMFQERSSRMLQALSPKQSPVSS 323
Query: 306 PTRSRSPSRSPSPTFSWLPLKTSPPSSPKAASASISSMSEGDEDEK 351
PTRSRSPSRSPSPTFSWLPLKTSPPSSPKAASASISSMSEGDEDEK
Sbjct: 324 PTRSRSPSRSPSPTFSWLPLKTSPPSSPKAASASISSMSEGDEDEK 369
>gi|253795516 choline phosphate cytidylyltransferase 1 beta isoform
3 [Homo sapiens]
Length = 330
Score = 582 bits (1499), Expect = e-166
Identities = 289/305 (94%), Positives = 293/305 (96%), Gaps = 1/305 (0%)
Query: 6 ECIMEEDNRAPQLWRKTLTAPAPFADETNCQCQAPHEKLTIAQARLGTPADRPVRVYADG 65
E + E ++ PQ R TLTAPAPFADETNCQCQAPHEKLTIAQARLGTPADRPVRVYADG
Sbjct: 25 ETMEEIEHTCPQP-RLTLTAPAPFADETNCQCQAPHEKLTIAQARLGTPADRPVRVYADG 83
Query: 66 IFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHKFKGFTVMNEAERYEALRHCRYVD 125
IFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHKFKGFTVMNEAERYEALRHCRYVD
Sbjct: 84 IFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHKFKGFTVMNEAERYEALRHCRYVD 143
Query: 126 EVIRDAPWTLTPEFLEKHKIDFVAHDDIPYSSAGSDDVYKHIKEAGMFVPTQRTEGISTS 185
EVIRDAPWTLTPEFLEKHKIDFVAHDDIPYSSAGSDDVYKHIKEAGMFVPTQRTEGISTS
Sbjct: 144 EVIRDAPWTLTPEFLEKHKIDFVAHDDIPYSSAGSDDVYKHIKEAGMFVPTQRTEGISTS 203
Query: 186 DIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKRYRFQNQVDKMKEKVKNVEERSKEF 245
DIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKRYRFQNQVDKMKEKVKNVEERSKEF
Sbjct: 204 DIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKRYRFQNQVDKMKEKVKNVEERSKEF 263
Query: 246 VNRVEEKSHDLIQKWEEKSREFIGNFLELFGPDGAWKQMFQERSSRMLQALSPKQSPVSS 305
VNRVEEKSHDLIQKWEEKSREFIGNFLELFGPDGAWKQMFQERSSRMLQALSPKQSP+ S
Sbjct: 264 VNRVEEKSHDLIQKWEEKSREFIGNFLELFGPDGAWKQMFQERSSRMLQALSPKQSPLKS 323
Query: 306 PTRSR 310
R R
Sbjct: 324 WARCR 328
>gi|31543385 choline phosphate cytidylyltransferase 1 alpha [Homo
sapiens]
Length = 367
Score = 495 bits (1274), Expect = e-140
Identities = 246/331 (74%), Positives = 279/331 (84%), Gaps = 8/331 (2%)
Query: 23 LTAPAPFADETNCQCQAPHEKLTIAQARLGTPADRPVRVYADGIFDLFHSGHARALMQAK 82
L PAPF+DE P+ ++T+ +A GTP +RPVRVYADGIFDLFHSGHARALMQAK
Sbjct: 41 LRQPAPFSDEIEVDFSKPYVRVTMEEASRGTPCERPVRVYADGIFDLFHSGHARALMQAK 100
Query: 83 TLFPNSYLLVGVCSDDLTHKFKGFTVMNEAERYEALRHCRYVDEVIRDAPWTLTPEFLEK 142
LFPN+YL+VGVCSD+LTH FKGFTVMNE ERY+A++HCRYVDEV+R+APWTLTPEFL +
Sbjct: 101 NLFPNTYLIVGVCSDELTHNFKGFTVMNENERYDAVQHCRYVDEVVRNAPWTLTPEFLAE 160
Query: 143 HKIDFVAHDDIPYSSAGSDDVYKHIKEAGMFVPTQRTEGISTSDIITRIVRDYDVYARRN 202
H+IDFVAHDDIPYSSAGSDDVYKHIKEAGMF PTQRTEGISTSDIITRIVRDYDVYARRN
Sbjct: 161 HRIDFVAHDDIPYSSAGSDDVYKHIKEAGMFAPTQRTEGISTSDIITRIVRDYDVYARRN 220
Query: 203 LQRGYTAKELNVSFINEKRYRFQNQVDKMKEKVKNVEERSKEFVNRVEEKSHDLIQKWEE 262
LQRGYTAKELNVSFINEK+Y Q +VDK+K+KVK+VEE+SKEFV +VEEKS DLIQKWEE
Sbjct: 221 LQRGYTAKELNVSFINEKKYHLQERVDKVKKKVKDVEEKSKEFVQKVEEKSIDLIQKWEE 280
Query: 263 KSREFIGNFLELFGPDGAWKQMFQERSSRMLQALSPKQSPVSSPTRSRSPSRSPSPTFSW 322
KSREFIG+FLE+FGP+GA K M +E RMLQA+SPKQSP SSPTR RSPSP+F W
Sbjct: 281 KSREFIGSFLEMFGPEGALKHMLKEGKGRMLQAISPKQSPSSSPTR----ERSPSPSFRW 336
Query: 323 -LPLKTSPPSSPKAAS---ASISSMSEGDED 349
KTSPP SP S A+ +SE +ED
Sbjct: 337 PFSGKTSPPCSPANLSRHKAAAYDISEDEED 367
>gi|4505651 phosphate cytidylyltransferase 2, ethanolamine [Homo
sapiens]
Length = 389
Score = 104 bits (259), Expect = 1e-22
Identities = 52/141 (36%), Positives = 85/141 (60%), Gaps = 2/141 (1%)
Query: 52 GTPADRPVRVYADGIFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHKFKGFTVMNE 111
G R VRV+ DG +D+ H GH+ L QA+ + YL+VGV +D+ K KG V +
Sbjct: 16 GPGGRRAVRVWCDGCYDMVHYGHSNQLRQARAM--GDYLIVGVHTDEEIAKHKGPPVFTQ 73
Query: 112 AERYEALRHCRYVDEVIRDAPWTLTPEFLEKHKIDFVAHDDIPYSSAGSDDVYKHIKEAG 171
ERY+ ++ ++VDEV+ AP+ T E L+K+ DF H + + D Y+ +K+AG
Sbjct: 74 EERYKMVQAIKWVDEVVPAAPYVTTLETLDKYNCDFCVHGNDITLTVDGRDTYEEVKQAG 133
Query: 172 MFVPTQRTEGISTSDIITRIV 192
+ +RT+G+ST+D++ R++
Sbjct: 134 RYRECKRTQGVSTTDLVGRML 154
Score = 82.4 bits (202), Expect = 6e-16
Identities = 54/156 (34%), Positives = 79/156 (50%), Gaps = 7/156 (4%)
Query: 61 VYADGIFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHKFKG--FTVMNEAERYEAL 118
+Y G FDLFH GH L + L Y++ G+ D + +KG + +MN ER ++
Sbjct: 216 IYVAGAFDLFHIGHVDFLEKVHRLAERPYIIAGLHFDQEVNHYKGKNYPIMNLHERTLSV 275
Query: 119 RHCRYVDEVIRDAPWTLTPEFLEKHKIDFVAH--DDIPYSSAGSDDVYKHIKEAGMFVPT 176
CRYV EV+ AP+ +T E L K+D V H +I GSD Y+ K G+F
Sbjct: 276 LACRYVSEVVIGAPYAVTAELLSHFKVDLVCHGKTEIIPDRDGSDP-YQEPKRRGIFRQI 334
Query: 177 QRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKEL 212
++T I+ RI+ + Y RN ++ AKEL
Sbjct: 335 DSGSNLTTDLIVQRIITNRLEYEARNQKK--EAKEL 368
>gi|116014339 olfactomedin-like 2A [Homo sapiens]
Length = 652
Score = 37.0 bits (84), Expect = 0.027
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 277 PDGAWKQMFQERSSRMLQALSPKQSPVSSPTRSRSPSRSPSPTFSWLPLKTSPPSSPKAA 336
P+ A + + RSS + S +P S P + + + +P+PT S LP T PPS P+ +
Sbjct: 332 PNSAEQDEAEPRSSERVDLASG--TPTSIPATTTTATTTPTPTTSLLP--TEPPSGPEVS 387
Query: 337 SASISSMSEG 346
S + EG
Sbjct: 388 SQGREASCEG 397
>gi|116089325 splicing factor, arginine/serine-rich 12 isoform a
[Homo sapiens]
Length = 624
Score = 36.6 bits (83), Expect = 0.035
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 12/101 (11%)
Query: 219 EKRYRFQNQVDKMKEKVKNVE-ERSKEFVNRVEEKSHDLIQKWEEKSREFIGNFLELFGP 277
E+ + DK KEK ++ E ER K+ ++EK +K ++KSR ++
Sbjct: 436 EREKEHEKDRDKEKEKEQDKEKEREKDRSKEIDEK-----RKKDKKSRTPPRSY------ 484
Query: 278 DGAWKQMFQERSSRMLQALSPKQSPVSSPTRSRSPSRSPSP 318
+ + + R R ++ S +SP +S T R SRSPSP
Sbjct: 485 NASRRSRSSSRERRRRRSRSSSRSPRTSKTIKRKSSRSPSP 525
>gi|21040255 splicing factor, arginine/serine-rich 12 isoform b
[Homo sapiens]
Length = 508
Score = 36.6 bits (83), Expect = 0.035
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 12/101 (11%)
Query: 219 EKRYRFQNQVDKMKEKVKNVE-ERSKEFVNRVEEKSHDLIQKWEEKSREFIGNFLELFGP 277
E+ + DK KEK ++ E ER K+ ++EK +K ++KSR ++
Sbjct: 320 EREKEHEKDRDKEKEKEQDKEKEREKDRSKEIDEK-----RKKDKKSRTPPRSY------ 368
Query: 278 DGAWKQMFQERSSRMLQALSPKQSPVSSPTRSRSPSRSPSP 318
+ + + R R ++ S +SP +S T R SRSPSP
Sbjct: 369 NASRRSRSSSRERRRRRSRSSSRSPRTSKTIKRKSSRSPSP 409
>gi|110347418 structural maintenance of chromosomes 2 [Homo sapiens]
Length = 1197
Score = 33.9 bits (76), Expect = 0.22
Identities = 27/103 (26%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 160 SDDVYKHIKEAGMFVPTQRTEGISTSDIITRIVRDYD-VYARRNL-QRGYTAKELNVSFI 217
++D IKE + + E + ++++++DYD + A R+L + +A + +
Sbjct: 903 NNDSQLKIKELDHNISKHKREAEDGAAKVSKMLKDYDWINAERHLFGQPNSAYDFKTNNP 962
Query: 218 NEKRYRFQNQVDKMKEKV-KNVEERSKEFVNRVEEKSHDLIQK 259
E R Q ++ +MKEK+ +NV R+ + EE+ +DL++K
Sbjct: 963 KEAGQRLQ-KLQEMKEKLGRNVNMRAMNVLTEAEERYNDLMKK 1004
>gi|110347425 structural maintenance of chromosomes 2 [Homo sapiens]
Length = 1197
Score = 33.9 bits (76), Expect = 0.22
Identities = 27/103 (26%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 160 SDDVYKHIKEAGMFVPTQRTEGISTSDIITRIVRDYD-VYARRNL-QRGYTAKELNVSFI 217
++D IKE + + E + ++++++DYD + A R+L + +A + +
Sbjct: 903 NNDSQLKIKELDHNISKHKREAEDGAAKVSKMLKDYDWINAERHLFGQPNSAYDFKTNNP 962
Query: 218 NEKRYRFQNQVDKMKEKV-KNVEERSKEFVNRVEEKSHDLIQK 259
E R Q ++ +MKEK+ +NV R+ + EE+ +DL++K
Sbjct: 963 KEAGQRLQ-KLQEMKEKLGRNVNMRAMNVLTEAEERYNDLMKK 1004
>gi|110347420 structural maintenance of chromosomes 2 [Homo sapiens]
Length = 1197
Score = 33.9 bits (76), Expect = 0.22
Identities = 27/103 (26%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 160 SDDVYKHIKEAGMFVPTQRTEGISTSDIITRIVRDYD-VYARRNL-QRGYTAKELNVSFI 217
++D IKE + + E + ++++++DYD + A R+L + +A + +
Sbjct: 903 NNDSQLKIKELDHNISKHKREAEDGAAKVSKMLKDYDWINAERHLFGQPNSAYDFKTNNP 962
Query: 218 NEKRYRFQNQVDKMKEKV-KNVEERSKEFVNRVEEKSHDLIQK 259
E R Q ++ +MKEK+ +NV R+ + EE+ +DL++K
Sbjct: 963 KEAGQRLQ-KLQEMKEKLGRNVNMRAMNVLTEAEERYNDLMKK 1004
>gi|218563737 hypothetical protein LOC124944 isoform 1 [Homo
sapiens]
Length = 192
Score = 33.5 bits (75), Expect = 0.29
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 20/108 (18%)
Query: 259 KWEEKSREFIGNFLELFGPD-----------------GAWKQMFQERSSRMLQALSPKQS 301
KW E E + ++ FG D K+ E S L A SPK+
Sbjct: 41 KWTETEIEMLRAAVKRFGDDLNHISCVIKERTVAQIKATVKRKVYEDSGIPLPAESPKKG 100
Query: 302 P--VSSPTRSRSPSRSPSPTFSWLPLKTSPPSSPKAASASISSMSEGD 347
P V+S S P+ +P P+ S +P PP + A ++S++++ D
Sbjct: 101 PKKVASGVLSPPPA-APPPSSSSVPEAGGPPIKKQKADVTLSALNDSD 147
>gi|52856421 hypothetical protein LOC124944 isoform 2 [Homo sapiens]
Length = 172
Score = 33.5 bits (75), Expect = 0.29
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 20/108 (18%)
Query: 259 KWEEKSREFIGNFLELFGPD-----------------GAWKQMFQERSSRMLQALSPKQS 301
KW E E + ++ FG D K+ E S L A SPK+
Sbjct: 41 KWTETEIEMLRAAVKRFGDDLNHISCVIKERTVAQIKATVKRKVYEDSGIPLPAESPKKG 100
Query: 302 P--VSSPTRSRSPSRSPSPTFSWLPLKTSPPSSPKAASASISSMSEGD 347
P V+S S P+ +P P+ S +P PP + A ++S++++ D
Sbjct: 101 PKKVASGVLSPPPA-APPPSSSSVPEAGGPPIKKQKADVTLSALNDSD 147
>gi|188497618 connector enhancer of kinase suppressor of Ras 1 [Homo
sapiens]
Length = 713
Score = 33.5 bits (75), Expect = 0.29
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 217 INEKRYRFQNQVDKMKEKVKNVEERSKEFVNRVEEKSHDLIQKWEEKSREFIGNFLELFG 276
+NE+ +R + +K K++ ++ E V E + + ++W+E++RE L
Sbjct: 609 LNERVHRVRALQSTLKAKLQELQVL--EEVLGDPELTGEKFRQWKEQNRELYSEGL---- 662
Query: 277 PDGAWKQMFQERSSRMLQALSPKQSPVSSPT 307
GAW E SS +L + S +QSP S P+
Sbjct: 663 --GAWGVAQAEGSSHILTSDSTEQSPHSLPS 691
>gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo
sapiens]
Length = 750
Score = 33.1 bits (74), Expect = 0.38
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 9/57 (15%)
Query: 219 EKRYRFQNQVDKMKEKVKNVEE---------RSKEFVNRVEEKSHDLIQKWEEKSRE 266
EK +R + ++ + +EK++ EE R +E + R EEK H+ + WEE+ R+
Sbjct: 510 EKVWRQEEKIREQEEKIREQEEKMWRQEEKIREQEEMWREEEKMHEQEKIWEEEKRQ 566
Score = 28.9 bits (63), Expect = 7.2
Identities = 13/48 (27%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 219 EKRYRFQNQVDKMKEKVKNVEERSKEFVNRVEEKSHDLIQKWEEKSRE 266
EK ++ + ++ + +EK++ EE+ +E ++ E+ ++ Q+ EEK E
Sbjct: 605 EKMWKQEEKIREQEEKIQEQEEKIREQEEKIREQ-EEMTQEQEEKMGE 651
>gi|109255234 centrosomal protein 290kDa [Homo sapiens]
Length = 2479
Score = 33.1 bits (74), Expect = 0.38
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 12/96 (12%)
Query: 179 TEGISTSDIITRIVRDYDVYARRNLQRGYTAKE-LNVSFINEKR---------YRFQNQV 228
TE IS D I+ R D+ + +N+ + E L+ I ++R +FQN++
Sbjct: 580 TENISQGDRISE--RKLDLLSLKNMSEAQSKNEFLSRELIEKERDLERSRTVIAKFQNKL 637
Query: 229 DKMKEKVKNVEERSKEFVNRVEEKSHDLIQKWEEKS 264
++ E+ K +EE KE + ++E D K E S
Sbjct: 638 KELVEENKQLEEGMKEILQAIKEMQKDPDVKGGETS 673
>gi|193083191 synaptopodin 2 isoform c [Homo sapiens]
Length = 1109
Score = 33.1 bits (74), Expect = 0.38
Identities = 21/68 (30%), Positives = 35/68 (51%)
Query: 275 FGPDGAWKQMFQERSSRMLQALSPKQSPVSSPTRSRSPSRSPSPTFSWLPLKTSPPSSPK 334
F P A + Q+ S ++ AL+ KQ+ P + SP+ + + +P TSPPS
Sbjct: 979 FQPPDAKDGLPQKSSVKVNSALAMKQALPPRPVNAASPTNVQASSVYSVPAYTSPPSFFA 1038
Query: 335 AASASISS 342
AS+ +S+
Sbjct: 1039 EASSPVSA 1046
Score = 30.8 bits (68), Expect = 1.9
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 11/93 (11%)
Query: 268 IGNFLELFGPDGAWKQMFQERSSRMLQALSPKQSPVSSPTRSRSPSRSPSPTFSWL---- 323
+G EL G G Q+F +R SRM + + + + R++SP +PS SW
Sbjct: 859 VGPSNELPGMSGRGAQLFAKRQSRMEKYVVDSDTVQAHAARAQSP--TPSLPASWKYSSN 916
Query: 324 -----PLKTSPPSSPKAASASISSMSEGDEDEK 351
P+ +P SP A++ S + K
Sbjct: 917 VRAPPPVAYNPIHSPSYPLAALKSQPSAAQPSK 949
>gi|193083185 synaptopodin 2 isoform b [Homo sapiens]
Length = 1093
Score = 33.1 bits (74), Expect = 0.38
Identities = 21/68 (30%), Positives = 35/68 (51%)
Query: 275 FGPDGAWKQMFQERSSRMLQALSPKQSPVSSPTRSRSPSRSPSPTFSWLPLKTSPPSSPK 334
F P A + Q+ S ++ AL+ KQ+ P + SP+ + + +P TSPPS
Sbjct: 979 FQPPDAKDGLPQKSSVKVNSALAMKQALPPRPVNAASPTNVQASSVYSVPAYTSPPSFFA 1038
Query: 335 AASASISS 342
AS+ +S+
Sbjct: 1039 EASSPVSA 1046
Score = 30.8 bits (68), Expect = 1.9
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 11/93 (11%)
Query: 268 IGNFLELFGPDGAWKQMFQERSSRMLQALSPKQSPVSSPTRSRSPSRSPSPTFSWL---- 323
+G EL G G Q+F +R SRM + + + + R++SP +PS SW
Sbjct: 859 VGPSNELPGMSGRGAQLFAKRQSRMEKYVVDSDTVQAHAARAQSP--TPSLPASWKYSSN 916
Query: 324 -----PLKTSPPSSPKAASASISSMSEGDEDEK 351
P+ +P SP A++ S + K
Sbjct: 917 VRAPPPVAYNPIHSPSYPLAALKSQPSAAQPSK 949
>gi|193083183 synaptopodin 2 isoform a [Homo sapiens]
Length = 1261
Score = 33.1 bits (74), Expect = 0.38
Identities = 21/68 (30%), Positives = 35/68 (51%)
Query: 275 FGPDGAWKQMFQERSSRMLQALSPKQSPVSSPTRSRSPSRSPSPTFSWLPLKTSPPSSPK 334
F P A + Q+ S ++ AL+ KQ+ P + SP+ + + +P TSPPS
Sbjct: 979 FQPPDAKDGLPQKSSVKVNSALAMKQALPPRPVNAASPTNVQASSVYSVPAYTSPPSFFA 1038
Query: 335 AASASISS 342
AS+ +S+
Sbjct: 1039 EASSPVSA 1046
Score = 30.8 bits (68), Expect = 1.9
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 11/93 (11%)
Query: 268 IGNFLELFGPDGAWKQMFQERSSRMLQALSPKQSPVSSPTRSRSPSRSPSPTFSWL---- 323
+G EL G G Q+F +R SRM + + + + R++SP +PS SW
Sbjct: 859 VGPSNELPGMSGRGAQLFAKRQSRMEKYVVDSDTVQAHAARAQSP--TPSLPASWKYSSN 916
Query: 324 -----PLKTSPPSSPKAASASISSMSEGDEDEK 351
P+ +P SP A++ S + K
Sbjct: 917 VRAPPPVAYNPIHSPSYPLAALKSQPSAAQPSK 949
>gi|10880975 hypothetical protein LOC57821 [Homo sapiens]
Length = 508
Score = 33.1 bits (74), Expect = 0.38
Identities = 15/51 (29%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 217 INEKRYRFQNQVDKMKEKVKNVEERSKEFVNRVEEKSHDLIQK-WEEKSRE 266
++ ++ Q Q+++ +EK+K EER K + +++ +D++ K W +K RE
Sbjct: 335 LSPRQKELQKQLEEKREKLKREEERRKIEEEKEKKRENDIVFKAWLQKKRE 385
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 32.7 bits (73), Expect = 0.50
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 297 SPKQSPVSSPTRSRSPSRSPSPTFSWLPLKTSPPSSPKAASASISSMS 344
SP +SP + + S SPSP +W L + P + + A++SS+S
Sbjct: 3268 SPTKSPTENMLATERVSLSPSPPEAWTNLYSGTPGGTRQSLATMSSVS 3315
>gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]
Length = 1970
Score = 32.7 bits (73), Expect = 0.50
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
Query: 297 SPKQSPVSSPTRSRSPSRSP-SPTFSWLPLK------TSPPSSPKAASASISS--MSEGD 347
SPK SP S SP SP SPT+S K TSP SP + + S++S +S D
Sbjct: 1906 SPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDD 1965
Query: 348 EDEK 351
DE+
Sbjct: 1966 SDEE 1969
Score = 30.4 bits (67), Expect = 2.5
Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 285 FQERSSRMLQALSPKQSPVSSPTRSRSPSRSP-SPTFSWLPLKTSPPSSPKAASASISSM 343
++ RS SP SP S SPS SP SP +S TSP SP + S S +S
Sbjct: 1600 YEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYS----PTSPSYSPTSPSYSPTSP 1655
Query: 344 S 344
S
Sbjct: 1656 S 1656
Score = 30.0 bits (66), Expect = 3.2
Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 297 SPKQSPVSSPTRSRSPSRSP-SPTFSWLPLKTSPPSSPKAASASISSMS 344
SP SP S SPS SP SP++S TSP SP + S S +S S
Sbjct: 1640 SPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPS 1684
Score = 30.0 bits (66), Expect = 3.2
Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 297 SPKQSPVSSPTRSRSPSRSP-SPTFSWLPLKTSPPSSPKAASASISSMS 344
SP SP S SPS SP SP++S TSP SP + S S +S S
Sbjct: 1668 SPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPS 1712
Score = 30.0 bits (66), Expect = 3.2
Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 297 SPKQSPVSSPTRSRSPSRSP-SPTFSWLPLKTSPPSSPKAASASISSMS 344
SP SP S SPS SP SP++S TSP SP + S S +S S
Sbjct: 1696 SPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPS 1740
Score = 28.9 bits (63), Expect = 7.2
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 297 SPKQSPVSSPTRSRSPSRSP-SPTFSWLPLKTSPPSSPKAASASISS 342
SPK SP S SP SP SPT+S T+P SP + + S +S
Sbjct: 1857 SPKYSPTSPKYSPTSPKYSPTSPTYS----PTTPKYSPTSPTYSPTS 1899
>gi|155030230 sorbin and SH3 domain containing 3 isoform 1 [Homo
sapiens]
Length = 671
Score = 32.7 bits (73), Expect = 0.50
Identities = 37/128 (28%), Positives = 54/128 (42%), Gaps = 12/128 (9%)
Query: 226 NQVDKMKEKVKNV--EERSKEFVNRVE---EKSHDLIQKWEEKSREFIGNFLELFGPDGA 280
NQV + +EKV NV EE +F+ +E L+ EK + I LE + A
Sbjct: 224 NQVLRRREKVDNVWTEESWNQFLQELETGQRPKKPLVDDPGEKPSQPIEVLLER---ELA 280
Query: 281 WKQMFQERSSRMLQALSPKQSPVSSPTRSRSPSRSP--SPTFSWLPLKTSPPSSPKAASA 338
++ R ++ P SP SSP R+P + P P +W P A S
Sbjct: 281 ELSAELDKDLRAIETRLP--SPKSSPAPRRAPEQRPPAGPASAWSSSYPHAPYLGSARSL 338
Query: 339 SISSMSEG 346
S M++G
Sbjct: 339 SPHKMADG 346
>gi|38683860 insulin receptor substrate 2 [Homo sapiens]
Length = 1338
Score = 32.7 bits (73), Expect = 0.50
Identities = 20/51 (39%), Positives = 25/51 (49%)
Query: 289 SSRMLQALSPKQSPVSSPTRSRSPSRSPSPTFSWLPLKTSPPSSPKAASAS 339
SS +L A SP S S + S SR SP ++ L S P SPK + S
Sbjct: 945 SSSLLSASSPASSLGSGTPGTSSDSRQRSPLSDYMNLDFSSPKSPKPGAPS 995
>gi|218563739 hypothetical protein LOC124944 isoform 3 [Homo
sapiens]
Length = 138
Score = 32.3 bits (72), Expect = 0.65
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 282 KQMFQERSSRMLQALSPKQSP--VSSPTRSRSPSRSPSPTFSWLPLKTSPPSSPKAASAS 339
K+ E S L A SPK+ P V+S S P+ +P P+ S +P PP + A +
Sbjct: 47 KRKVYEDSGIPLPAESPKKGPKKVASGVLSPPPA-APPPSSSSVPEAGGPPIKKQKADVT 105
Query: 340 ISSMSEGD 347
+S++++ D
Sbjct: 106 LSALNDSD 113
>gi|150170729 microtubule associated serine/threonine kinase 3 [Homo
sapiens]
Length = 1309
Score = 32.3 bits (72), Expect = 0.65
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 10/65 (15%)
Query: 289 SSRMLQALSPKQSPVSSPTRSRSPS-----RSPSPTFSWLPLKT--SPPSSPKAASASIS 341
SS + +LS +S SPT S SPS RSP+P +P T SPPS+ ++S+ S
Sbjct: 1093 SSGLHHSLSSSESLPGSPTHSLSPSPTTPCRSPAPD---VPADTTASPPSASPSSSSPAS 1149
Query: 342 SMSEG 346
+ G
Sbjct: 1150 PAAAG 1154
>gi|122937426 RGP1 retrograde golgi transport homolog [Homo sapiens]
Length = 431
Score = 32.3 bits (72), Expect = 0.65
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 281 WKQMFQERSSRM--LQALSPKQSPVSSPTRSRSPSRSPSPTFSW-LPLKTSPPSSPKAAS 337
W+ F+ +SR L L P + P PT P + P TFSW LP+K P S A+
Sbjct: 362 WRLHFEFVTSREPGLVLLPPVEQP--EPTTWTGPEQVPVDTFSWDLPIKVLPTSPTLASY 419
Query: 338 AS 339
A+
Sbjct: 420 AA 421
>gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens]
Length = 474
Score = 32.0 bits (71), Expect = 0.85
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Query: 295 ALSPKQSPVSSPTRSRSPS--------RSPSPTFSWLPLKTSPPSSPKAASASISSMSEG 346
+LS + S SSP RSP+ R+ SP S P S +S ++S+S S S
Sbjct: 338 SLSGRSSAASSPAAGRSPADHRGYASLRAASPAPSSAPSHASSSASSHSSSSSSSGSSSS 397
Query: 347 DED 349
D++
Sbjct: 398 DDE 400
>gi|188528616 testis specific, 10 [Homo sapiens]
Length = 698
Score = 32.0 bits (71), Expect = 0.85
Identities = 25/108 (23%), Positives = 52/108 (48%), Gaps = 15/108 (13%)
Query: 174 VPTQRTEGISTSDIITRIVRDYDVYARRN--LQRGYTAKELNVSFINEKRYRFQNQVDKM 231
V R + T+D + +I R+ D+ A N LQ + + +++K N+++ +
Sbjct: 326 VSRMRRQLDETNDELAQIARERDILAHDNDNLQEQFAKAKQENQALSKKLNDTHNELNDI 385
Query: 232 KEKVK--NVEERSKEFVNRVEE-----------KSHDLIQKWEEKSRE 266
K+KV+ N+E + + + EE K+++ + WE K+R+
Sbjct: 386 KQKVQDTNLEVNKLKNILKSEESENRQMMEQLRKANEDAENWENKARQ 433
>gi|13376858 testis specific, 10 [Homo sapiens]
Length = 698
Score = 32.0 bits (71), Expect = 0.85
Identities = 25/108 (23%), Positives = 52/108 (48%), Gaps = 15/108 (13%)
Query: 174 VPTQRTEGISTSDIITRIVRDYDVYARRN--LQRGYTAKELNVSFINEKRYRFQNQVDKM 231
V R + T+D + +I R+ D+ A N LQ + + +++K N+++ +
Sbjct: 326 VSRMRRQLDETNDELAQIARERDILAHDNDNLQEQFAKAKQENQALSKKLNDTHNELNDI 385
Query: 232 KEKVK--NVEERSKEFVNRVEE-----------KSHDLIQKWEEKSRE 266
K+KV+ N+E + + + EE K+++ + WE K+R+
Sbjct: 386 KQKVQDTNLEVNKLKNILKSEESENRQMMEQLRKANEDAENWENKARQ 433
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.131 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,071,812
Number of Sequences: 37866
Number of extensions: 688703
Number of successful extensions: 6051
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 150
Number of HSP's that attempted gapping in prelim test: 5466
Number of HSP's gapped (non-prelim): 738
length of query: 351
length of database: 18,247,518
effective HSP length: 103
effective length of query: 248
effective length of database: 14,347,320
effective search space: 3558135360
effective search space used: 3558135360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.