Guide to the Human Genome
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Name: SMC2 Sequence: fasta or formatted (1197aa) NCBI GI: 110347425
Description:

structural maintenance of chromosomes 2

Referenced in:

Spindle, M phase, and Meiosis

Other entries for this name:
alt mRNA [1197aa] structural maintenance of chromosomes 2
alt mRNA [1197aa] structural maintenance of chromosomes 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9        106           3
 C cysteine            0.8          9           1
 D aspartate           4.5         54           1
 E glutamate          11.1        133           3
 F phenylalanine       2.6         31           1
 G glycine             4.3         51           2
 H histidine           1.7         20           1
 I isoleucine          5.0         60           2
 K lysine             12.2        146           3
 L leucine            10.3        123           2
 M methionine          2.4         29           2
 N asparagine          5.8         70           2
 P proline             1.8         22           2
 Q glutamine           5.6         67           2
 R arginine            4.2         50           2
 S serine              5.5         66           2
 T threonine           5.1         61           2
 V valine              5.7         68           3
 W tryptophan          0.4          5           1
 Y tyrosine            2.2         26           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   structural maintenance of chromosomes 2 
SMC2                  1.000   structural maintenance of chromosomes 2 
SMC2                  1.000   structural maintenance of chromosomes 2 
SMC3                  0.127   structural maintenance of chromosomes 3 
SMC1A                 0.113   structural maintenance of chromosomes 1A 
SMC4                  0.091   SMC4 structural maintenance of chromosomes 4-like 1 ...
SMC4                  0.091   SMC4 structural maintenance of chromosomes 4-like 1 ...
SMC1B                 0.077   SMC1 structural maintenance of chromosomes 1-like 2 ...
KTN1                  0.038   kinectin 1 isoform a 
KTN1                  0.038   kinectin 1 isoform a 
MYH7                  0.038   myosin, heavy chain 7, cardiac muscle, beta 
MYH11                 0.036   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.036   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.036   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.036   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
MYH4                  0.036   myosin, heavy polypeptide 4, skeletal muscle 
ERC1                  0.035   RAB6-interacting protein 2 isoform epsilon 
MYH10                 0.035   myosin, heavy polypeptide 10, non-muscle 
KTN1                  0.035   kinectin 1 isoform b 
MYH2                  0.035   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.035   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH3                  0.035   myosin, heavy chain 3, skeletal muscle, embryonic [H...
MYH6                  0.035   myosin heavy chain 6 
MYH13                 0.034   myosin, heavy polypeptide 13, skeletal muscle [Homo...
CENPE                 0.034   centromere protein E 
MYH8                  0.034   myosin, heavy chain 8, skeletal muscle, perinatal [...
KTN1                  0.034   kinectin 1 isoform c 
EEA1                  0.034   early endosome antigen 1, 162kD 
GOLGB1                0.034   golgi autoantigen, golgin subfamily b, macrogolgin ...
GOLGA4                0.034   golgi autoantigen, golgin subfamily a, 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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