Guide to the Human Genome
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Name: PCYT1B Sequence: fasta or formatted (351aa) NCBI GI: 253795514
Description:

choline phosphate cytidylyltransferase 1 beta isoform 2

Referenced in:

Lipid Metabolism

Other entries for this name:
alt prot [369aa] choline phosphate cytidylyltransferase 1 beta isoform 1
alt prot [330aa] choline phosphate cytidylyltransferase 1 beta isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         25           2
 C cysteine            1.4          5           1
 D aspartate           6.3         22           2
 E glutamate           8.3         29           2
 F phenylalanine       4.8         17           1
 G glycine             4.0         14           1
 H histidine           2.8         10           1
 I isoleucine          4.3         15           2
 K lysine              6.8         24           1
 L leucine             6.3         22           2
 M methionine          2.6          9           1
 N asparagine          3.1         11           1
 P proline             6.3         22           2
 Q glutamine           4.3         15           1
 R arginine            7.4         26           2
 S serine              9.1         32           2
 T threonine           5.1         18           1
 V valine              5.7         20           1
 W tryptophan          1.4          5           1
 Y tyrosine            2.8         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   choline phosphate cytidylyltransferase 1 beta isofo... 
PCYT1B                0.938   choline phosphate cytidylyltransferase 1 beta isofor...
PCYT1B                0.806   choline phosphate cytidylyltransferase 1 beta isofo...
PCYT1A                0.680   choline phosphate cytidylyltransferase 1 alpha [Homo...
PCYT2                 0.114   phosphate cytidylyltransferase 2, ethanolamine 
OLFML2A               0.017   olfactomedin-like 2A 
SFRS12                0.017   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.017   splicing factor, arginine/serine-rich 12 isoform b [...
SMC2                  0.013   structural maintenance of chromosomes 2 
SMC2                  0.013   structural maintenance of chromosomes 2 
SMC2                  0.013   structural maintenance of chromosomes 2 
C17orf49              0.012   hypothetical protein LOC124944 isoform 1 
C17orf49              0.012   hypothetical protein LOC124944 isoform 2 
CNKSR1                0.012   connector enhancer of kinase suppressor of Ras 1 [H...
LOC727832             0.012   golgi autoantigen, golgin subfamily a-like 
CEP290                0.012   centrosomal protein 290kDa 
SYNPO2                0.012   synaptopodin 2 isoform c 
SYNPO2                0.012   synaptopodin 2 isoform b 
SYNPO2                0.012   synaptopodin 2 isoform a 
C1orf114              0.012   hypothetical protein LOC57821 
MUC16                 0.012   mucin 16 
POLR2A                0.012   DNA-directed RNA polymerase II A 
SORBS3                0.012   sorbin and SH3 domain containing 3 isoform 1 
IRS2                  0.012   insulin receptor substrate 2 
C17orf49              0.010   hypothetical protein LOC124944 isoform 3 
MAST3                 0.010   microtubule associated serine/threonine kinase 3 [H...
RGP1                  0.010   RGP1 retrograde golgi transport homolog 
SOX4                  0.010   SRY (sex determining region Y)-box 4 
TSGA10                0.010   testis specific, 10 
TSGA10                0.010   testis specific, 10 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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