Guide to the Human Genome
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Name: PCYT1A Sequence: fasta or formatted (367aa) NCBI GI: 31543385
Description:

choline phosphate cytidylyltransferase 1 alpha

Referenced in:

Lipid Metabolism

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         27           3
 C cysteine            1.6          6           1
 D aspartate           6.3         23           2
 E glutamate           9.3         34           2
 F phenylalanine       4.6         17           1
 G glycine             5.2         19           1
 H histidine           2.7         10           1
 I isoleucine          4.4         16           2
 K lysine              7.9         29           3
 L leucine             4.6         17           1
 M methionine          2.2          8           1
 N asparagine          3.3         12           1
 P proline             6.3         23           2
 Q glutamine           3.3         12           1
 R arginine            7.4         27           2
 S serine              8.2         30           3
 T threonine           4.1         15           1
 V valine              7.4         27           2
 W tryptophan          0.8          3           1
 Y tyrosine            3.3         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   choline phosphate cytidylyltransferase 1 alpha [Homo... 
PCYT1B                0.650   choline phosphate cytidylyltransferase 1 beta isofo...
PCYT1B                0.650   choline phosphate cytidylyltransferase 1 beta isofor...
PCYT1B                0.607   choline phosphate cytidylyltransferase 1 beta isofo...
PCYT2                 0.108   phosphate cytidylyltransferase 2, ethanolamine 
SR140                 0.015   U2-associated SR140 protein 
MLLT4                 0.015   myeloid/lymphoid or mixed-lineage leukemia (trithora...
MACF1                 0.014   microfilament and actin filament cross-linker protei...
LOC400352             0.012   PREDICTED: similar to Putative golgin subfamily A m...
LOC100132816          0.012   PREDICTED: similar to Putative golgin subfamily A m...
ZC3H13                0.012   zinc finger CCCH-type containing 13 
NFATC3                0.011   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC3                0.011   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC3                0.011   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC3                0.011   nuclear factor of activated T-cells, cytoplasmic, cal...
GOLGA4                0.011   golgi autoantigen, golgin subfamily a, 4 
BAZ1A                 0.011   bromodomain adjacent to zinc finger domain, 1A isofo...
BAZ1A                 0.011   bromodomain adjacent to zinc finger domain, 1A isofo...
C18orf21              0.011   chromosome 18 open reading frame 21 
LOC283767             0.011   golgi autoantigen, golgin subfamily a-like 
NCOR1                 0.011   nuclear receptor co-repressor 1 
RALBP1                0.011   ralA binding protein 1 
DIAPH3                0.010   diaphanous homolog 3 isoform b 
DIAPH3                0.010   diaphanous homolog 3 isoform a 
EEA1                  0.010   early endosome antigen 1, 162kD 
LOC727832             0.010   golgi autoantigen, golgin subfamily a-like 
LOC728897             0.010   PREDICTED: similar to coiled-coil domain containing...
FUSSEL18              0.010   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.010   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.010   PREDICTED: functional smad suppressing element 18 [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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